Wall clock time and date at job start Fri Apr 10 2020 18:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 120.00295 * 2 1 4 4 H 1.48495 * 109.46874 * 239.99790 * 3 2 1 5 5 H 1.48499 * 109.46931 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47111 * 119.99868 * 3 2 1 7 7 C 1.38945 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99880 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00012 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00158 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00117 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47426 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00211 * 179.97438 * 13 12 10 15 15 O 1.21586 * 120.00048 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99940 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99969 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47237 * 179.72043 * 17 16 14 19 19 C 1.52996 * 109.46929 * 179.97438 * 18 17 16 20 20 N 1.46907 * 109.47007 * 180.02562 * 19 18 17 21 21 C 1.46845 * 110.99902 * 294.21019 * 20 19 18 22 22 C 1.53034 * 109.52134 * 174.15869 * 21 20 19 23 23 C 1.53114 * 109.27961 * 59.18255 * 22 21 20 24 24 C 1.53117 * 109.15939 * 302.34259 * 23 22 21 25 25 C 1.46847 * 110.99954 * 169.99824 * 20 19 18 26 26 H 0.97007 * 119.99673 * 0.02562 * 1 2 3 27 27 H 0.96995 * 119.99877 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47083 * 59.99535 * 12 10 9 29 29 H 1.09001 * 109.46875 * 299.99798 * 12 10 9 30 30 H 0.97004 * 119.99747 * 0.02562 * 13 12 10 31 31 H 0.97005 * 120.00161 * 359.72198 * 16 14 13 32 32 H 1.09001 * 109.46512 * 299.72412 * 17 16 14 33 33 H 1.08998 * 109.47174 * 59.71534 * 17 16 14 34 34 H 1.09000 * 109.46986 * 299.99958 * 18 17 16 35 35 H 1.09002 * 109.46857 * 60.00093 * 18 17 16 36 36 H 1.09000 * 109.47441 * 299.99910 * 19 18 17 37 37 H 1.08994 * 109.47235 * 60.00181 * 19 18 17 38 38 H 1.08995 * 109.46328 * 294.17581 * 21 20 19 39 39 H 1.08999 * 109.46052 * 54.14611 * 21 20 19 40 40 H 1.08993 * 109.50484 * 299.23732 * 22 21 20 41 41 H 1.09001 * 109.49882 * 179.12233 * 22 21 20 42 42 H 1.08998 * 109.52643 * 182.43658 * 23 22 21 43 43 H 1.09005 * 109.52651 * 62.24873 * 23 22 21 44 44 H 1.08996 * 109.50405 * 297.71348 * 24 23 22 45 45 H 1.09005 * 109.50670 * 177.59452 * 24 23 22 46 46 H 1.08995 * 109.46281 * 305.85431 * 25 20 19 47 47 H 1.09000 * 109.46112 * 65.82614 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5579 0.0026 11 8 3.2100 -3.5580 0.0022 12 6 1.2435 -4.8630 0.0032 13 7 2.1955 -5.9766 0.0037 14 6 1.7462 -7.2472 0.0048 15 8 0.5508 -7.4693 0.0049 16 7 2.6219 -8.2716 0.0058 17 6 2.1335 -9.6529 0.0064 18 6 3.3235 -10.6146 0.0005 19 6 2.8134 -12.0570 0.0017 20 7 3.9559 -12.9804 -0.0034 21 6 4.7135 -12.8733 -1.2567 22 6 5.9729 -13.7382 -1.1685 23 6 5.5700 -15.1938 -0.9168 24 6 4.7413 -15.2707 0.3684 25 6 3.5175 -14.3614 0.2358 26 1 -0.4850 0.8401 -0.0004 27 1 0.3533 -2.3906 0.0016 28 1 0.6172 -4.9213 -0.8869 29 1 0.6166 -4.9201 0.8930 30 1 3.1492 -5.7993 0.0040 31 1 3.5757 -8.0944 0.0016 32 1 1.5317 -9.8249 0.8987 33 1 1.5242 -9.8232 -0.8811 34 1 3.9253 -10.4424 -0.8919 35 1 3.9327 -10.4442 0.8881 36 1 2.2118 -12.2289 0.8943 37 1 2.2039 -12.2276 -0.8856 38 1 4.0946 -13.2165 -2.0857 39 1 4.9975 -11.8340 -1.4217 40 1 6.5990 -13.3868 -0.3484 41 1 6.5270 -13.6707 -2.1048 42 1 6.4652 -15.8064 -0.8102 43 1 4.9763 -15.5577 -1.7554 44 1 5.3479 -14.9435 1.2127 45 1 4.4153 -16.2982 0.5303 46 1 2.9329 -14.4028 1.1547 47 1 2.9042 -14.6976 -0.6002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358311892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:38 Heat of formation + Delta-G solvation = -106.294866 kcal Electronic energy + Delta-G solvation = -24833.533850 eV Core-core repulsion = 21049.330289 eV Total energy + Delta-G solvation = -3784.203561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.19889 -40.10297 -39.88779 -36.87482 -36.19627 -35.25363 -34.75072 -33.36119 -31.96487 -31.52418 -29.16190 -26.88745 -26.00715 -24.27143 -23.75222 -22.19245 -21.75849 -21.35062 -20.59263 -20.09745 -19.45226 -17.67745 -17.38225 -17.09822 -16.84379 -16.46727 -16.44984 -15.90474 -15.83932 -15.48264 -15.35009 -15.17623 -15.06942 -14.82351 -14.36527 -14.00943 -13.92698 -13.73484 -13.52574 -13.31375 -13.06528 -12.88460 -12.62095 -12.46040 -12.45387 -12.12727 -12.09923 -11.87573 -11.56972 -11.55042 -11.45243 -11.24278 -11.11903 -10.54462 -10.42437 -10.09109 -9.80041 -9.27366 -8.49642 -6.00058 1.39276 1.43418 1.53603 1.62664 1.91152 2.12603 2.29814 2.87815 3.08740 3.17539 3.37044 3.86722 3.89790 3.99771 4.08061 4.14780 4.18768 4.23716 4.36254 4.44937 4.46974 4.48716 4.54855 4.60512 4.69024 4.71954 4.75713 4.85101 4.95171 5.05857 5.09058 5.18836 5.21790 5.25195 5.31442 5.32243 5.39644 5.49410 5.50825 5.92426 5.97579 6.14399 6.17735 6.49357 7.04413 7.04534 7.43924 7.54407 7.95689 8.66948 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.040623 B = 0.001644 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.097770 B =17032.705155 C =17554.450729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.724 5.724 14 C 0.703 3.297 15 O -0.634 6.634 16 N -0.732 5.732 17 C 0.143 3.857 18 C -0.113 4.113 19 C 0.061 3.939 20 N -0.546 5.546 21 C 0.049 3.951 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.115 4.115 25 C 0.053 3.947 26 H 0.280 0.720 27 H 0.399 0.601 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.410 0.590 31 H 0.411 0.589 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.029 0.971 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.074 -28.887 -1.130 30.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.382 5.382 14 C 0.403 3.597 15 O -0.516 6.516 16 N -0.389 5.389 17 C 0.018 3.982 18 C -0.151 4.151 19 C -0.068 4.068 20 N -0.271 5.271 21 C -0.079 4.079 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.153 4.153 25 C -0.075 4.075 26 H 0.089 0.911 27 H 0.233 0.767 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.248 0.752 31 H 0.247 0.753 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 7.941 -28.799 -0.746 29.883 hybrid contribution -0.130 0.922 -0.678 1.151 sum 7.811 -27.878 -1.424 28.986 Atomic orbital electron populations 1.69682 1.07010 1.29678 1.49189 1.26130 0.96534 1.02673 0.95743 0.84915 0.77693 0.76215 0.79073 1.19511 1.19652 1.19504 1.19720 0.93008 0.83567 1.50558 0.89519 1.41826 1.09591 1.04574 1.63443 1.20415 0.88121 0.85896 0.83518 1.90465 1.15150 1.87558 1.58029 1.20576 0.91020 0.83096 1.04001 1.44688 1.11018 1.03266 1.79234 1.15971 0.85158 0.80847 0.77773 1.90879 1.15781 1.84765 1.60169 1.44950 1.09335 1.04930 1.79644 1.21154 0.96923 0.78403 1.01698 1.21650 0.96697 0.92808 1.03961 1.21940 0.91938 0.91360 1.01534 1.61918 1.23599 1.06331 1.35228 1.22203 0.95175 1.00926 0.89577 1.21584 0.96719 0.94917 1.02225 1.21593 1.00156 0.96606 0.97631 1.21579 0.96317 0.99096 0.98303 1.22136 0.97055 0.87586 1.00704 0.91081 0.76698 0.89107 0.89100 0.75177 0.75314 0.92208 0.92511 0.90515 0.90009 0.90017 0.94579 0.95323 0.90236 0.91621 0.90813 0.91108 0.92379 0.91641 0.90537 0.90387 0.95146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.70 13.05 21.66 0.28 -48.42 16 2 C -0.01 -0.52 5.50 84.92 0.47 -0.06 16 3 Si 1.00 41.71 29.55 68.60 2.03 43.73 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.34 -18.71 9.68 84.04 0.81 -17.90 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.17 5.29 -306.98 -1.62 -29.79 16 10 C 0.43 20.09 7.85 87.66 0.69 20.78 16 11 O -0.62 -32.17 15.24 -3.08 -0.05 -32.22 16 12 C 0.14 5.28 6.15 85.63 0.53 5.80 16 13 N -0.72 -24.10 5.53 -482.31 -2.67 -26.77 16 14 C 0.70 22.55 8.57 179.06 1.53 24.08 16 15 O -0.63 -24.91 16.34 -3.99 -0.07 -24.97 16 16 N -0.73 -16.60 5.56 -478.53 -2.66 -19.26 16 17 C 0.14 2.72 5.67 86.38 0.49 3.21 16 18 C -0.11 -1.51 5.26 30.59 0.16 -1.35 16 19 C 0.06 0.79 4.96 86.30 0.43 1.22 16 20 N -0.55 -7.33 4.66 -896.38 -4.17 -11.51 16 21 C 0.05 0.61 5.29 86.33 0.46 1.06 16 22 C -0.12 -1.26 6.09 30.64 0.19 -1.07 16 23 C -0.12 -1.19 6.00 30.67 0.18 -1.00 16 24 C -0.12 -1.16 6.09 30.65 0.19 -0.97 16 25 C 0.05 0.62 5.46 86.33 0.47 1.09 16 26 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 27 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 28 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 29 H 0.09 3.25 8.14 -2.39 -0.02 3.24 16 30 H 0.41 13.16 7.45 -92.71 -0.69 12.47 16 31 H 0.41 7.17 8.49 -92.70 -0.79 6.39 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 0.95 6.43 -2.39 -0.02 0.94 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.03 7.99 -2.39 -0.02 1.01 16 37 H 0.04 0.49 8.12 -2.39 -0.02 0.47 16 38 H 0.03 0.37 8.14 -2.39 -0.02 0.36 16 39 H 0.08 0.96 6.21 -2.39 -0.01 0.94 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 44 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 46 H 0.08 0.86 8.01 -2.39 -0.02 0.84 16 47 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -67.28 381.04 -3.55 -70.84 By element: Atomic # 1 Polarization: 44.68 SS G_CDS: -1.22 Total: 43.46 kcal Atomic # 6 Polarization: 28.31 SS G_CDS: 6.59 Total: 34.91 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -10.84 Total: -135.75 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: -0.11 Total: -57.19 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -67.28 -3.55 -70.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358311892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.459 kcal (2) G-P(sol) polarization free energy of solvation -67.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds