Wall clock time and date at job start Fri Apr 10 2020 18:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00223 * 2 1 4 4 H 1.08997 * 110.05688 * 331.41665 * 3 2 1 5 5 C 1.54269 * 110.03303 * 92.83238 * 3 2 1 6 6 C 1.54880 * 104.19717 * 142.89672 * 5 3 2 7 7 C 1.54894 * 102.75094 * 322.05722 * 6 5 3 8 8 C 1.53872 * 110.03204 * 209.99862 * 3 2 1 9 9 H 1.09006 * 110.07107 * 121.40889 * 8 3 2 10 10 C 1.52997 * 110.03352 * 0.02562 * 8 3 2 11 11 N 1.46503 * 109.46747 * 176.37971 * 10 8 3 12 12 C 1.34779 * 119.99606 * 179.97438 * 11 10 8 13 13 O 1.21358 * 119.99765 * 0.02562 * 12 11 10 14 14 C 1.49450 * 119.99981 * 179.97438 * 12 11 10 15 15 O 1.21345 * 119.99730 * 0.02562 * 14 12 11 16 16 N 1.34779 * 119.99981 * 180.02562 * 14 12 11 17 17 C 1.46499 * 119.99872 * 179.97438 * 16 14 12 18 18 C 1.53000 * 109.46840 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47060 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00362 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99850 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47052 * 89.99717 * 24 22 20 26 26 H 1.48495 * 109.47307 * 209.99656 * 24 22 20 27 27 H 1.48500 * 109.47143 * 330.00164 * 24 22 20 28 28 H 1.09004 * 109.46854 * 59.99862 * 1 2 3 29 29 H 1.08994 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47057 * 300.00318 * 1 2 3 31 31 H 1.09005 * 110.48374 * 24.21295 * 5 3 2 32 32 H 1.09005 * 110.48260 * 261.57552 * 5 3 2 33 33 H 1.09002 * 110.75700 * 203.74216 * 6 5 3 34 34 H 1.08999 * 110.75879 * 80.36806 * 6 5 3 35 35 H 1.09003 * 110.48334 * 279.26972 * 7 6 5 36 36 H 1.08991 * 110.60341 * 156.67605 * 7 6 5 37 37 H 1.08992 * 109.47280 * 56.38191 * 10 8 3 38 38 H 1.09002 * 109.46777 * 296.37472 * 10 8 3 39 39 H 0.96991 * 120.00647 * 359.97438 * 11 10 8 40 40 H 0.97005 * 119.99680 * 0.02562 * 16 14 12 41 41 H 1.09001 * 109.46813 * 60.00258 * 17 16 14 42 42 H 1.08992 * 109.47397 * 300.00319 * 17 16 14 43 43 H 1.09002 * 109.47398 * 300.00326 * 18 17 16 44 44 H 1.09001 * 109.47194 * 60.00507 * 18 17 16 45 45 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 46 46 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 47 47 H 0.96994 * 119.99814 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3410 2.0126 -0.4899 5 6 2.2907 1.7590 1.4476 6 6 3.6253 2.5388 1.3495 7 6 4.4267 1.7155 0.3108 8 6 3.3684 1.2776 -0.7228 9 1 3.3588 1.9710 -1.5639 10 6 3.6709 -0.1388 -1.2157 11 7 4.9233 -0.1342 -1.9758 12 6 5.3917 -1.2796 -2.5098 13 8 4.7757 -2.3146 -2.3613 14 6 6.6690 -1.2749 -3.2857 15 8 7.2846 -0.2398 -3.4346 16 7 7.1371 -2.4202 -3.8201 17 6 8.3889 -2.4154 -4.5812 18 6 8.6918 -3.8321 -5.0734 19 6 9.9994 -3.8273 -5.8677 20 6 10.2976 -5.2224 -6.3530 21 1 9.6218 -6.0316 -6.1187 22 6 11.4326 -5.4658 -7.0970 23 7 11.6926 -6.6833 -7.5210 24 14 12.6005 -4.0658 -7.5041 25 1 13.6259 -3.9502 -6.4361 26 1 13.2670 -4.3388 -8.8027 27 1 11.8371 -2.7954 -7.5968 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.4006 0.8954 2.1035 32 1 1.4932 2.4110 1.8042 33 1 4.1375 2.5503 2.3116 34 1 3.4544 3.5533 0.9895 35 1 4.8816 0.8448 0.7831 36 1 5.1894 2.3336 -0.1626 37 1 2.8585 -0.4819 -1.8562 38 1 3.7673 -0.8081 -0.3608 39 1 5.4154 0.6931 -2.0949 40 1 6.6447 -3.2475 -3.7014 41 1 9.2017 -2.0719 -3.9414 42 1 8.2918 -1.7464 -5.4361 43 1 8.7891 -4.5009 -4.2181 44 1 7.8791 -4.1761 -5.7131 45 1 9.9026 -3.1584 -6.7229 46 1 10.8121 -3.4834 -5.2278 47 1 12.4912 -6.8545 -8.0441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358617294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:54 Heat of formation + Delta-G solvation = -164.784355 kcal Electronic energy + Delta-G solvation = -25302.777654 eV Core-core repulsion = 21483.745048 eV Total energy + Delta-G solvation = -3819.032607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.75551 -40.42627 -39.50779 -37.35731 -37.07166 -35.69790 -35.05569 -33.29180 -31.18096 -29.34011 -29.15177 -27.20665 -26.61822 -25.08150 -23.54827 -22.27956 -21.82552 -21.38356 -20.75130 -19.51987 -18.86045 -18.15959 -17.64609 -17.25346 -16.87796 -16.56716 -16.31502 -16.23462 -15.99618 -15.65483 -15.46626 -15.25843 -14.84313 -14.77372 -14.67538 -14.25301 -13.81534 -13.64291 -13.43388 -13.15073 -12.92281 -12.73514 -12.69429 -12.39589 -12.24590 -11.95717 -11.90309 -11.86796 -11.77741 -11.60232 -11.58202 -11.47991 -11.33236 -10.75090 -10.72161 -10.49861 -10.33027 -10.24115 -8.27960 -6.32495 0.31414 1.29649 1.38883 1.40518 1.52398 2.11323 2.37954 2.61372 2.84933 3.07652 3.38947 3.55495 3.63059 3.76450 4.02204 4.17796 4.25990 4.31149 4.33621 4.44371 4.48286 4.50406 4.55205 4.63174 4.73874 4.81429 4.82204 4.86769 4.89189 4.94559 5.01166 5.02068 5.12479 5.17752 5.18174 5.21351 5.24884 5.44872 5.46688 5.55748 5.65435 5.90420 6.28502 6.29712 6.34714 6.70775 6.75899 6.91531 7.32156 8.88592 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.033459 B = 0.001904 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.640957 B =14704.798242 C =15314.329454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.088 3.912 4 H 0.084 0.916 5 C -0.145 4.145 6 C -0.118 4.118 7 C -0.125 4.125 8 C -0.099 4.099 9 H 0.104 0.896 10 C 0.141 3.859 11 N -0.686 5.686 12 C 0.509 3.491 13 O -0.544 6.544 14 C 0.505 3.495 15 O -0.544 6.544 16 N -0.689 5.689 17 C 0.124 3.876 18 C -0.105 4.105 19 C -0.011 4.011 20 C -0.533 4.533 21 H 0.034 0.966 22 C 0.002 3.998 23 N -0.952 5.952 24 Si 0.951 3.049 25 H -0.267 1.267 26 H -0.286 1.286 27 H -0.243 1.243 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.419 0.581 40 H 0.418 0.582 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.026 0.974 46 H 0.024 0.976 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.874 24.057 19.004 38.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C 0.030 3.970 4 H 0.102 0.898 5 C -0.183 4.183 6 C -0.156 4.156 7 C -0.162 4.162 8 C -0.118 4.118 9 H 0.122 0.878 10 C 0.019 3.981 11 N -0.340 5.340 12 C 0.290 3.710 13 O -0.422 6.422 14 C 0.285 3.715 15 O -0.422 6.422 16 N -0.341 5.341 17 C 0.001 3.999 18 C -0.143 4.143 19 C -0.049 4.049 20 C -0.571 4.571 21 H 0.052 0.948 22 C -0.195 4.195 23 N -0.592 5.592 24 Si 0.774 3.226 25 H -0.192 1.192 26 H -0.212 1.212 27 H -0.167 1.167 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.257 0.743 40 H 0.255 0.745 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.669 23.787 18.912 37.912 hybrid contribution 0.463 -0.204 -0.426 0.661 sum -22.205 23.583 18.486 37.296 Atomic orbital electron populations 1.22916 0.79981 1.03373 1.00789 1.87956 1.20972 1.28283 1.95087 1.22904 0.93549 0.84684 0.95850 0.89775 1.22892 0.98705 1.00387 0.96301 1.22408 0.94833 0.99000 0.99337 1.22510 0.97292 1.00178 0.96234 1.22210 0.95068 0.95293 0.99259 0.87805 1.21277 0.83698 0.98059 0.95069 1.45805 1.25526 1.10431 1.52209 1.20045 0.85656 0.84720 0.80622 1.90775 1.59360 1.32376 1.59682 1.20237 0.86180 0.84331 0.80746 1.90735 1.59597 1.31902 1.60009 1.45909 1.25215 1.11062 1.51953 1.21555 0.84528 0.98347 0.95427 1.21527 0.98570 0.94302 0.99907 1.19460 0.94441 0.95113 0.95854 1.21480 1.07702 0.94844 1.33089 0.94787 1.26046 0.99862 0.98337 0.95262 1.70072 1.28034 1.22582 1.38557 0.85643 0.78929 0.80241 0.77754 1.19182 1.21194 1.16667 0.93133 0.89529 0.93008 0.91629 0.90107 0.90816 0.89897 0.92188 0.89975 0.91432 0.91862 0.74317 0.74517 0.90814 0.90853 0.91875 0.91870 0.95607 0.95724 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 113.37 1.23 1.47 16 2 O -0.40 -5.92 8.47 -148.98 -1.26 -7.18 16 3 C 0.09 0.90 3.36 31.32 0.11 1.01 16 4 H 0.08 0.59 7.81 -2.39 -0.02 0.57 16 5 C -0.15 -1.27 6.56 31.67 0.21 -1.06 16 6 C -0.12 -0.88 6.91 31.88 0.22 -0.66 16 7 C -0.12 -1.22 6.02 31.67 0.19 -1.03 16 8 C -0.10 -1.07 2.98 -10.07 -0.03 -1.10 16 9 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 10 C 0.14 2.44 3.99 86.38 0.34 2.79 16 11 N -0.69 -13.16 5.38 -464.40 -2.50 -15.66 16 12 C 0.51 13.10 7.89 87.27 0.69 13.79 16 13 O -0.54 -16.71 16.48 -3.27 -0.05 -16.77 16 14 C 0.50 14.11 7.89 87.27 0.69 14.80 16 15 O -0.54 -16.84 16.48 -3.23 -0.05 -16.89 16 16 N -0.69 -19.33 5.55 -464.42 -2.58 -21.91 16 17 C 0.12 3.81 5.67 86.38 0.49 4.30 16 18 C -0.11 -3.83 5.27 30.59 0.16 -3.67 16 19 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 20 C -0.53 -30.46 9.66 25.60 0.25 -30.21 16 21 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 22 C 0.00 0.09 5.47 84.65 0.46 0.55 16 23 N -0.95 -59.89 13.96 21.45 0.30 -59.60 16 24 Si 0.95 44.02 27.47 68.60 1.88 45.91 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 27 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 28 H 0.05 0.38 8.10 -2.38 -0.02 0.36 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.77 8.08 -2.38 -0.02 0.75 16 32 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.06 0.77 7.78 -2.39 -0.02 0.75 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 1.34 7.71 -2.39 -0.02 1.32 16 38 H 0.06 1.32 7.90 -2.39 -0.02 1.30 16 39 H 0.42 6.67 7.78 -92.71 -0.72 5.95 16 40 H 0.42 11.01 7.95 -92.70 -0.74 10.27 16 41 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.03 1.13 7.20 -2.39 -0.02 1.12 16 46 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 47 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -71.66 384.82 0.32 -71.34 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -0.55 Total: 20.13 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 5.13 Total: 0.62 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -4.78 Total: -97.16 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -1.37 Total: -40.84 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.91 kcal Total: -71.66 0.32 -71.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358617294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.444 kcal (2) G-P(sol) polarization free energy of solvation -71.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds