Wall clock time and date at job start Fri Apr 10 2020 18:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47110 * 2 1 4 4 C 1.52993 * 109.47274 * 239.99240 * 2 1 3 5 5 N 1.46501 * 109.46943 * 119.99180 * 2 1 3 6 6 C 1.34781 * 119.99852 * 60.00003 * 5 2 1 7 7 O 1.21590 * 119.99620 * 5.02610 * 6 5 2 8 8 N 1.34773 * 120.00381 * 185.01952 * 6 5 2 9 9 C 1.47077 * 120.88208 * 175.00648 * 8 6 5 10 10 C 1.53243 * 108.52062 * 231.20622 * 9 8 6 11 11 N 1.46901 * 109.33849 * 306.17015 * 10 9 8 12 12 C 1.46905 * 110.99791 * 187.25082 * 11 10 9 13 13 C 1.50697 * 109.46790 * 170.00140 * 12 11 10 14 14 O 1.21284 * 120.00278 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99508 * 180.02562 * 13 12 11 16 16 C 1.37105 * 119.99445 * 179.97438 * 15 13 12 17 17 H 1.07995 * 120.00472 * 359.72967 * 16 15 13 18 18 C 1.38952 * 119.99324 * 179.72818 * 16 15 13 19 19 N 1.31403 * 120.00536 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99673 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47316 * 59.99786 * 20 18 16 22 22 H 1.48495 * 109.47266 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47154 * 299.99908 * 20 18 16 24 24 C 1.46901 * 111.26950 * 63.10773 * 11 10 9 25 25 C 1.47082 * 120.87792 * 355.03049 * 8 6 5 26 26 H 1.09004 * 109.47398 * 300.00771 * 1 2 3 27 27 H 1.09002 * 109.46546 * 60.00292 * 1 2 3 28 28 H 1.08997 * 109.47495 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47339 * 180.02562 * 3 2 1 30 30 H 1.09009 * 109.46792 * 299.99442 * 3 2 1 31 31 H 1.08996 * 109.47973 * 59.99388 * 3 2 1 32 32 H 1.08993 * 109.47609 * 300.00528 * 4 2 1 33 33 H 1.09009 * 109.47046 * 60.00302 * 4 2 1 34 34 H 1.09002 * 109.47261 * 179.97438 * 4 2 1 35 35 H 0.96995 * 120.00695 * 240.00474 * 5 2 1 36 36 H 1.09004 * 109.62831 * 111.50151 * 9 8 6 37 37 H 1.08999 * 109.63140 * 350.91755 * 9 8 6 38 38 H 1.08996 * 109.49117 * 186.21467 * 10 9 8 39 39 H 1.08998 * 109.49286 * 66.13038 * 10 9 8 40 40 H 1.08999 * 109.47062 * 50.00438 * 12 11 10 41 41 H 1.08998 * 109.47127 * 290.00317 * 12 11 10 42 42 H 0.96998 * 120.00648 * 359.72919 * 15 13 12 43 43 H 0.97002 * 120.00319 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.49551 * 56.84851 * 24 11 10 45 45 H 1.08995 * 109.49612 * 176.93119 * 24 11 10 46 46 H 1.09002 * 109.62495 * 248.50059 * 25 8 6 47 47 H 1.08994 * 109.63131 * 9.08184 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 2.0183 -0.6904 1.1963 6 6 1.6927 -1.9808 1.4097 7 8 1.0711 -2.5983 0.5667 8 7 2.0561 -2.5866 2.5574 9 6 1.6186 -3.9582 2.8584 10 6 0.9952 -3.9741 4.2583 11 7 1.9452 -3.3999 5.2204 12 6 1.4571 -3.5530 6.5975 13 6 2.5528 -3.1812 7.5630 14 8 3.6337 -2.8234 7.1452 15 7 2.3314 -3.2463 8.8909 16 6 3.3284 -2.9085 9.7693 17 1 4.2924 -2.5945 9.3973 18 6 3.0984 -2.9702 11.1383 19 7 1.9253 -3.3518 11.5910 20 14 4.4566 -2.5093 12.3352 21 1 4.8640 -1.1003 12.1030 22 1 3.9611 -2.6578 13.7272 23 1 5.6241 -3.4029 12.1270 24 6 2.2265 -1.9907 4.9153 25 6 2.9003 -1.8935 3.5424 26 1 -0.3634 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9565 0.8898 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2076 -2.1392 34 1 3.1301 -0.7210 -1.2493 35 1 2.5759 -0.2191 1.8348 36 1 2.4764 -4.6302 2.8320 37 1 0.8782 -4.2758 2.1243 38 1 0.7657 -5.0010 4.5425 39 1 0.0790 -3.3837 4.2551 40 1 1.1612 -4.5886 6.7650 41 1 0.5984 -2.9000 6.7533 42 1 1.4657 -3.5287 9.2251 43 1 1.7647 -3.3945 12.5467 44 1 1.2931 -1.4279 4.9029 45 1 2.8898 -1.5792 5.6760 46 1 3.8813 -2.3671 3.5816 47 1 3.0073 -0.8461 3.2604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360301660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:19 Heat of formation + Delta-G solvation = -47.360865 kcal Electronic energy + Delta-G solvation = -26829.500856 eV Core-core repulsion = 23047.852865 eV Total energy + Delta-G solvation = -3781.647991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.65632 -38.94814 -37.68602 -36.44408 -34.52033 -33.82134 -32.10590 -31.29098 -30.68753 -28.60295 -27.61315 -27.38736 -25.68224 -23.91376 -23.69255 -21.83656 -20.12926 -19.31082 -19.27799 -18.18927 -17.82448 -16.31380 -15.99061 -15.56907 -15.31494 -15.06197 -14.79256 -14.56128 -14.45026 -14.26430 -13.97365 -13.83976 -13.62216 -13.50667 -13.08552 -12.69310 -12.50582 -12.25581 -12.19935 -11.91923 -11.79506 -11.58691 -11.54606 -11.33348 -11.27774 -11.21571 -11.13752 -11.09985 -10.81381 -10.46585 -10.24303 -9.80155 -9.49585 -9.22155 -8.74103 -8.33507 -8.00950 -7.89993 -6.44494 -3.85547 2.57884 3.17587 3.17997 3.23902 3.27789 3.74651 3.86293 3.94193 4.20710 4.56891 4.71607 4.83358 4.88381 4.99968 5.09033 5.20595 5.21050 5.28027 5.33333 5.40032 5.41352 5.46396 5.56482 5.59143 5.62088 5.74948 5.78387 5.79651 5.81250 5.86934 5.91496 6.10692 6.14747 6.19849 6.23134 6.24579 6.52264 6.53782 6.88344 7.20539 7.31035 7.52119 7.92254 8.02966 8.58235 8.58557 9.14789 9.51178 10.02419 10.73076 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.027139 B = 0.002556 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.480163 B =10952.544786 C =11464.961870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 C -0.155 4.155 4 C -0.164 4.164 5 N -0.743 5.743 6 C 0.711 3.289 7 O -0.592 6.592 8 N -0.630 5.630 9 C 0.138 3.862 10 C 0.040 3.960 11 N -0.513 5.513 12 C 0.046 3.954 13 C 0.443 3.557 14 O -0.579 6.579 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.040 3.960 25 C 0.121 3.879 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.395 0.605 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.034 0.966 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.026 0.974 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 5.790 -19.513 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.099 3.901 3 C -0.213 4.213 4 C -0.222 4.222 5 N -0.401 5.401 6 C 0.413 3.587 7 O -0.471 6.471 8 N -0.367 5.367 9 C 0.015 3.985 10 C -0.089 4.089 11 N -0.238 5.238 12 C -0.085 4.085 13 C 0.229 3.771 14 O -0.463 6.463 15 N -0.199 5.199 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.089 4.089 25 C -0.003 4.003 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.231 0.769 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.052 0.948 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.133 0.867 46 H 0.099 0.901 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.943 5.314 -20.246 21.138 hybrid contribution -0.408 0.742 1.476 1.702 sum -3.352 6.056 -18.770 20.006 Atomic orbital electron populations 1.22221 0.94495 1.03889 1.01417 1.20139 0.94114 0.91197 0.84619 1.22088 1.01637 0.94594 1.02973 1.22272 1.00764 1.03202 0.95977 1.45510 1.57029 1.11078 1.26448 1.15810 0.79494 0.81414 0.81967 1.90817 1.46996 1.64853 1.44472 1.47442 1.54258 1.16333 1.18702 1.21544 1.00072 0.81629 0.95303 1.22547 0.93479 1.00566 0.92348 1.61496 1.43771 1.17432 1.01114 1.21855 0.96178 1.02038 0.88424 1.19713 0.89334 0.85031 0.83042 1.90469 1.26090 1.52248 1.77540 1.41875 1.15092 1.58885 1.04091 1.19642 0.94938 1.41984 0.86373 0.87933 1.25264 0.97530 0.97325 0.97784 1.69598 1.21986 1.47447 1.15235 0.85921 0.80432 0.79203 0.78683 1.19929 1.20989 1.19862 1.22627 0.99877 0.88819 0.97546 1.21746 0.94818 0.96118 0.87590 0.92906 0.92075 0.90435 0.91946 0.90833 0.91951 0.89759 0.92326 0.92995 0.76885 0.90919 0.88844 0.89514 0.94799 0.89165 0.93501 0.77478 0.91786 0.95590 0.86743 0.90092 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.40 37.16 0.31 -1.27 16 2 C 0.19 1.72 1.06 -131.82 -0.14 1.58 16 3 C -0.16 -1.03 8.59 37.16 0.32 -0.71 16 4 C -0.16 -1.60 8.40 37.15 0.31 -1.29 16 5 N -0.74 -7.80 5.02 -52.42 -0.26 -8.06 16 6 C 0.71 9.52 7.71 -86.92 -0.67 8.85 16 7 O -0.59 -9.38 12.05 5.29 0.06 -9.32 16 8 N -0.63 -8.17 3.01 -178.19 -0.54 -8.71 16 9 C 0.14 1.75 6.58 -3.60 -0.02 1.73 16 10 C 0.04 0.51 5.62 -3.70 -0.02 0.49 16 11 N -0.51 -8.16 4.37 -235.76 -1.03 -9.19 16 12 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 13 C 0.44 10.02 7.44 -10.99 -0.08 9.94 16 14 O -0.58 -14.75 13.91 5.55 0.08 -14.67 16 15 N -0.56 -13.86 5.29 -10.96 -0.06 -13.92 16 16 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 17 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 20 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 24 C 0.04 0.60 5.26 -3.70 -0.02 0.58 16 25 C 0.12 1.51 6.59 -3.60 -0.02 1.48 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.97 6.34 -51.93 -0.33 0.64 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 1.06 6.00 -51.93 -0.31 0.75 16 33 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.39 3.49 5.97 -40.82 -0.24 3.25 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.18 7.10 -51.93 -0.37 0.82 16 38 H 0.09 0.99 7.99 -51.93 -0.41 0.58 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 1.40 7.97 -51.93 -0.41 0.99 16 41 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.11 2.07 5.76 -51.93 -0.30 1.77 16 46 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.07 0.72 5.63 -51.93 -0.29 0.43 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -31.46 367.67 -8.39 -39.85 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -7.58 Total: 11.91 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -0.30 Total: 14.36 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -1.16 Total: -63.31 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.14 Total: -23.99 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.46 -8.39 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360301660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.511 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds