Wall clock time and date at job start Fri Apr 10 2020 18:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47110 * 2 1 4 4 C 1.52993 * 109.47274 * 239.99240 * 2 1 3 5 5 N 1.46501 * 109.46943 * 119.99180 * 2 1 3 6 6 C 1.34781 * 119.99852 * 60.00003 * 5 2 1 7 7 O 1.21590 * 119.99620 * 5.02610 * 6 5 2 8 8 N 1.34773 * 120.00381 * 185.01952 * 6 5 2 9 9 C 1.47077 * 120.88208 * 175.00648 * 8 6 5 10 10 C 1.53243 * 108.52062 * 231.20622 * 9 8 6 11 11 N 1.46901 * 109.33849 * 306.17015 * 10 9 8 12 12 C 1.46905 * 110.99791 * 187.25082 * 11 10 9 13 13 C 1.50697 * 109.46790 * 170.00140 * 12 11 10 14 14 O 1.21284 * 120.00278 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99508 * 180.02562 * 13 12 11 16 16 C 1.37105 * 119.99445 * 179.97438 * 15 13 12 17 17 H 1.07995 * 120.00472 * 359.72967 * 16 15 13 18 18 C 1.38952 * 119.99324 * 179.72818 * 16 15 13 19 19 N 1.31403 * 120.00536 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99673 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47316 * 59.99786 * 20 18 16 22 22 H 1.48495 * 109.47266 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47154 * 299.99908 * 20 18 16 24 24 C 1.46901 * 111.26950 * 63.10773 * 11 10 9 25 25 C 1.47082 * 120.87792 * 355.03049 * 8 6 5 26 26 H 1.09004 * 109.47398 * 300.00771 * 1 2 3 27 27 H 1.09002 * 109.46546 * 60.00292 * 1 2 3 28 28 H 1.08997 * 109.47495 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47339 * 180.02562 * 3 2 1 30 30 H 1.09009 * 109.46792 * 299.99442 * 3 2 1 31 31 H 1.08996 * 109.47973 * 59.99388 * 3 2 1 32 32 H 1.08993 * 109.47609 * 300.00528 * 4 2 1 33 33 H 1.09009 * 109.47046 * 60.00302 * 4 2 1 34 34 H 1.09002 * 109.47261 * 179.97438 * 4 2 1 35 35 H 0.96995 * 120.00695 * 240.00474 * 5 2 1 36 36 H 1.09004 * 109.62831 * 111.50151 * 9 8 6 37 37 H 1.08999 * 109.63140 * 350.91755 * 9 8 6 38 38 H 1.08996 * 109.49117 * 186.21467 * 10 9 8 39 39 H 1.08998 * 109.49286 * 66.13038 * 10 9 8 40 40 H 1.08999 * 109.47062 * 50.00438 * 12 11 10 41 41 H 1.08998 * 109.47127 * 290.00317 * 12 11 10 42 42 H 0.96998 * 120.00648 * 359.72919 * 15 13 12 43 43 H 0.97002 * 120.00319 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.49551 * 56.84851 * 24 11 10 45 45 H 1.08995 * 109.49612 * 176.93119 * 24 11 10 46 46 H 1.09002 * 109.62495 * 248.50059 * 25 8 6 47 47 H 1.08994 * 109.63131 * 9.08184 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 2.0183 -0.6904 1.1963 6 6 1.6927 -1.9808 1.4097 7 8 1.0711 -2.5983 0.5667 8 7 2.0561 -2.5866 2.5574 9 6 1.6186 -3.9582 2.8584 10 6 0.9952 -3.9741 4.2583 11 7 1.9452 -3.3999 5.2204 12 6 1.4571 -3.5530 6.5975 13 6 2.5528 -3.1812 7.5630 14 8 3.6337 -2.8234 7.1452 15 7 2.3314 -3.2463 8.8909 16 6 3.3284 -2.9085 9.7693 17 1 4.2924 -2.5945 9.3973 18 6 3.0984 -2.9702 11.1383 19 7 1.9253 -3.3518 11.5910 20 14 4.4566 -2.5093 12.3352 21 1 4.8640 -1.1003 12.1030 22 1 3.9611 -2.6578 13.7272 23 1 5.6241 -3.4029 12.1270 24 6 2.2265 -1.9907 4.9153 25 6 2.9003 -1.8935 3.5424 26 1 -0.3634 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9565 0.8898 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2076 -2.1392 34 1 3.1301 -0.7210 -1.2493 35 1 2.5759 -0.2191 1.8348 36 1 2.4764 -4.6302 2.8320 37 1 0.8782 -4.2758 2.1243 38 1 0.7657 -5.0010 4.5425 39 1 0.0790 -3.3837 4.2551 40 1 1.1612 -4.5886 6.7650 41 1 0.5984 -2.9000 6.7533 42 1 1.4657 -3.5287 9.2251 43 1 1.7647 -3.3945 12.5467 44 1 1.2931 -1.4279 4.9029 45 1 2.8898 -1.5792 5.6760 46 1 3.8813 -2.3671 3.5816 47 1 3.0073 -0.8461 3.2604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360301660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:18 Heat of formation + Delta-G solvation = -70.361879 kcal Electronic energy + Delta-G solvation = -26830.498255 eV Core-core repulsion = 23047.852865 eV Total energy + Delta-G solvation = -3782.645390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66936 -40.42150 -39.03324 -37.45091 -36.02741 -35.44080 -33.26370 -33.04848 -31.74919 -29.92966 -28.22744 -28.15546 -27.28863 -25.48736 -24.78257 -22.89299 -21.12455 -20.96670 -20.26494 -19.87627 -19.12378 -17.78177 -17.13655 -16.62526 -16.61866 -16.37117 -16.32586 -15.87358 -15.51758 -15.38268 -15.31453 -15.08607 -15.01768 -14.45864 -14.29062 -13.92352 -13.53507 -13.35719 -13.13831 -13.02741 -12.94741 -12.89954 -12.76903 -12.51363 -12.41608 -12.31398 -12.22965 -12.15588 -12.09465 -12.08294 -11.98882 -11.41976 -10.82961 -10.33334 -10.14038 -9.98005 -9.59540 -9.18663 -8.44214 -5.92524 1.41134 1.43236 1.53680 1.63303 2.07953 2.14604 2.29736 2.73360 2.84859 3.22917 3.38142 3.83722 3.90704 4.00723 4.03999 4.12416 4.16397 4.20455 4.27352 4.42283 4.46944 4.50936 4.59739 4.71169 4.74495 4.75435 4.80720 4.86427 4.88639 4.92193 4.97078 5.03073 5.06503 5.22161 5.29173 5.43153 5.43818 5.54423 5.71868 5.78720 5.99472 6.07273 6.16315 6.62906 6.97918 7.15348 7.58890 7.59446 8.14459 8.72981 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.027139 B = 0.002556 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.480163 B =10952.544786 C =11464.961870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.179 3.821 3 C -0.148 4.148 4 C -0.159 4.159 5 N -0.734 5.734 6 C 0.706 3.294 7 O -0.619 6.619 8 N -0.631 5.631 9 C 0.139 3.861 10 C 0.047 3.953 11 N -0.529 5.529 12 C 0.058 3.942 13 C 0.444 3.556 14 O -0.610 6.610 15 N -0.575 5.575 16 C -0.330 4.330 17 H 0.081 0.919 18 C -0.014 4.014 19 N -0.922 5.922 20 Si 0.991 3.009 21 H -0.271 1.271 22 H -0.273 1.273 23 H -0.272 1.272 24 C 0.044 3.956 25 C 0.130 3.870 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.403 0.597 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.037 0.963 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.032 0.968 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.773 6.768 -20.149 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.093 3.907 3 C -0.206 4.206 4 C -0.217 4.217 5 N -0.392 5.392 6 C 0.408 3.592 7 O -0.500 6.500 8 N -0.369 5.369 9 C 0.016 3.984 10 C -0.082 4.082 11 N -0.255 5.255 12 C -0.073 4.073 13 C 0.231 3.769 14 O -0.496 6.496 15 N -0.213 5.213 16 C -0.459 4.459 17 H 0.099 0.901 18 C -0.214 4.214 19 N -0.563 5.563 20 Si 0.815 3.185 21 H -0.196 1.196 22 H -0.198 1.198 23 H -0.197 1.197 24 C -0.085 4.085 25 C 0.006 3.994 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.241 0.759 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.055 0.945 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.229 0.771 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.153 6.306 -20.894 22.051 hybrid contribution -0.360 0.436 1.570 1.668 sum -3.513 6.741 -19.324 20.766 Atomic orbital electron populations 1.22169 0.94898 1.02111 1.02392 1.20354 0.93877 0.92647 0.83812 1.22050 1.02069 0.92435 1.04043 1.22207 1.00784 1.01599 0.97160 1.45530 1.56544 1.10130 1.26979 1.15988 0.79361 0.82142 0.81686 1.90811 1.48192 1.65705 1.45286 1.47474 1.54262 1.16450 1.18687 1.21529 1.00063 0.81687 0.95149 1.22566 0.92736 1.01391 0.91469 1.61479 1.45041 1.18014 1.00919 1.21728 0.94217 1.03508 0.87854 1.20671 0.90125 0.83022 0.83058 1.90451 1.27994 1.53056 1.78091 1.41947 1.14813 1.59782 1.04736 1.19621 0.95044 1.43690 0.87563 0.90076 1.26019 0.99712 0.96848 0.98790 1.69665 1.23189 1.47710 1.15772 0.85011 0.77760 0.78843 0.76881 1.19611 1.19777 1.19745 1.22504 0.99559 0.88518 0.97911 1.21662 0.93788 0.97668 0.86248 0.92824 0.90214 0.93483 0.91238 0.89284 0.91391 0.92896 0.90468 0.92816 0.75883 0.91006 0.88792 0.87668 0.94493 0.86993 0.91817 0.77127 0.91400 0.95000 0.89927 0.91060 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 8.40 71.98 0.60 -2.28 16 2 C 0.18 3.01 1.06 3.60 0.00 3.01 16 3 C -0.15 -1.55 8.59 71.98 0.62 -0.93 16 4 C -0.16 -2.91 8.40 71.98 0.60 -2.31 16 5 N -0.73 -14.34 5.02 -438.01 -2.20 -16.54 16 6 C 0.71 18.34 7.71 179.05 1.38 19.73 16 7 O -0.62 -19.59 12.05 -4.00 -0.05 -19.64 16 8 N -0.63 -15.76 3.01 -835.93 -2.52 -18.28 16 9 C 0.14 3.39 6.58 86.35 0.57 3.96 16 10 C 0.05 1.12 5.62 86.38 0.49 1.61 16 11 N -0.53 -16.25 4.37 -899.82 -3.93 -20.18 16 12 C 0.06 1.92 5.45 85.56 0.47 2.39 16 13 C 0.44 20.19 7.44 87.66 0.65 20.84 16 14 O -0.61 -31.71 13.91 -3.04 -0.04 -31.75 16 15 N -0.58 -28.69 5.29 -306.99 -1.62 -30.31 16 16 C -0.33 -18.24 9.68 84.04 0.81 -17.43 16 17 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 18 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 19 N -0.92 -49.25 13.05 21.66 0.28 -48.96 16 20 Si 0.99 42.22 29.55 68.60 2.03 44.25 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 C 0.04 1.30 5.26 86.38 0.45 1.75 16 25 C 0.13 3.11 6.59 86.35 0.57 3.68 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.16 6.34 -2.39 -0.02 1.15 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 1.33 6.00 -2.39 -0.01 1.31 16 33 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.40 6.31 5.97 -92.71 -0.55 5.76 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 2.31 7.10 -2.39 -0.02 2.29 16 38 H 0.11 2.15 7.99 -2.39 -0.02 2.13 16 39 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.11 3.25 7.97 -2.39 -0.02 3.23 16 41 H 0.06 1.93 8.12 -2.39 -0.02 1.91 16 42 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 43 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 44 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 3.03 5.76 -2.39 -0.01 3.01 16 46 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.10 1.82 5.63 -2.39 -0.01 1.80 16 Total: -1.00 -68.83 367.67 -0.66 -69.50 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -0.30 Total: 38.16 kcal Atomic # 6 Polarization: 26.07 SS G_CDS: 7.69 Total: 33.76 kcal Atomic # 7 Polarization: -124.29 SS G_CDS: -9.99 Total: -134.27 kcal Atomic # 8 Polarization: -51.30 SS G_CDS: -0.09 Total: -51.39 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -68.83 -0.66 -69.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360301660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.866 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds