Wall clock time and date at job start Fri Apr 10 2020 18:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46949 * 2 1 4 4 C 1.53001 * 109.46949 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46691 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46861 * 55.00591 * 5 4 3 7 7 N 1.46494 * 109.47581 * 295.00095 * 5 4 3 8 8 C 1.34770 * 120.00228 * 300.00379 * 7 5 4 9 9 N 1.34784 * 120.00089 * 180.02562 * 8 7 5 10 10 O 1.21587 * 119.99905 * 359.97438 * 8 7 5 11 11 C 1.50700 * 109.46937 * 175.00102 * 5 4 3 12 12 O 1.21279 * 120.00229 * 100.00190 * 11 5 4 13 13 N 1.34785 * 120.00071 * 280.00427 * 11 5 4 14 14 C 1.46963 * 120.59137 * 359.71799 * 13 11 5 15 15 C 1.53814 * 108.39676 * 124.75928 * 14 13 11 16 16 N 1.46966 * 108.57807 * 49.63258 * 15 14 13 17 17 C 1.36945 * 120.59034 * 124.62534 * 16 15 14 18 18 H 1.08001 * 119.99800 * 208.18073 * 17 16 15 19 19 C 1.38809 * 119.99881 * 28.18657 * 17 16 15 20 20 N 1.31623 * 120.00513 * 17.55479 * 19 17 16 21 21 Si 1.86799 * 119.99950 * 197.55670 * 19 17 16 22 22 H 1.48504 * 109.47144 * 59.99610 * 21 19 17 23 23 H 1.48495 * 109.47383 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47108 * 300.00036 * 21 19 17 25 25 C 1.46954 * 118.81549 * 304.64893 * 16 15 14 26 26 C 1.46966 * 120.59113 * 179.97438 * 13 11 5 27 27 H 1.08997 * 109.47132 * 60.00083 * 1 2 3 28 28 H 1.08999 * 109.46879 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46923 * 299.99733 * 1 2 3 30 30 H 1.09001 * 109.46923 * 240.00267 * 2 1 3 31 31 H 1.08997 * 109.47132 * 119.99917 * 2 1 3 32 32 H 1.09003 * 109.46769 * 59.99933 * 3 2 1 33 33 H 1.09000 * 109.46781 * 300.00288 * 3 2 1 34 34 H 1.08997 * 109.47132 * 299.99917 * 4 3 2 35 35 H 1.09001 * 109.46923 * 60.00267 * 4 3 2 36 36 H 0.97009 * 119.99536 * 120.00059 * 7 5 4 37 37 H 0.97000 * 119.99590 * 359.97438 * 9 8 7 38 38 H 0.97000 * 119.99752 * 180.02562 * 9 8 7 39 39 H 1.08998 * 109.60722 * 244.53955 * 14 13 11 40 40 H 1.08996 * 109.60954 * 5.05762 * 14 13 11 41 41 H 1.09009 * 109.74336 * 289.84888 * 15 14 13 42 42 H 1.09000 * 109.53628 * 169.30123 * 15 14 13 43 43 H 0.96994 * 120.00602 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.61490 * 295.48117 * 25 16 15 45 45 H 1.09005 * 109.61466 * 174.97004 * 25 16 15 46 46 H 1.09000 * 109.61139 * 354.95084 * 26 13 11 47 47 H 1.09002 * 109.60782 * 115.46277 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6449 3.4245 0.8414 7 7 3.6928 3.5394 -1.2523 8 6 4.1178 3.0434 -2.4311 9 7 3.7621 3.6457 -3.5832 10 8 4.8228 2.0531 -2.4553 11 6 5.5817 2.8870 0.1244 12 8 6.2717 3.0395 -0.8612 13 7 6.1582 2.7193 1.3312 14 6 5.3346 2.5396 2.5350 15 6 5.7622 1.2331 3.2251 16 7 7.2255 1.2328 3.3614 17 6 7.8112 1.0633 4.5876 18 1 8.7815 1.4937 4.7867 19 6 7.1578 0.3382 5.5746 20 7 6.1666 -0.4661 5.2532 21 14 7.6850 0.5038 7.3589 22 1 7.5325 1.9164 7.7911 23 1 6.8352 -0.3679 8.2092 24 1 9.1062 0.0953 7.4951 25 6 8.0490 1.4181 2.1584 26 6 7.6215 2.7184 1.4674 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9289 0.8908 35 1 3.9337 0.9286 -0.8892 36 1 3.1306 4.3297 -1.2329 37 1 3.1999 4.4359 -3.5639 38 1 4.0677 3.2884 -4.4317 39 1 5.4871 3.3806 3.2114 40 1 4.2834 2.4792 2.2534 41 1 5.4507 0.3795 2.6229 42 1 5.3029 1.1749 4.2119 43 1 5.7098 -0.9725 5.9429 44 1 7.9004 0.5778 1.4803 45 1 9.0999 1.4821 2.4406 46 1 8.0809 2.7763 0.4806 47 1 7.9334 3.5719 2.0694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362610262.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:27 Heat of formation + Delta-G solvation = -43.159391 kcal Electronic energy + Delta-G solvation = -27956.988092 eV Core-core repulsion = 24175.522291 eV Total energy + Delta-G solvation = -3781.465801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.49362 -38.84356 -36.66844 -36.10539 -34.10600 -33.77492 -33.43322 -31.45444 -30.42096 -29.94759 -27.44187 -26.16660 -23.65493 -22.92273 -22.55676 -21.59533 -20.73543 -20.06290 -18.62156 -18.47660 -17.23834 -16.79883 -15.96314 -15.85622 -15.35304 -14.94293 -14.69741 -14.47435 -14.14412 -14.02411 -13.79625 -13.64709 -13.48684 -13.27391 -12.99204 -12.93883 -12.56350 -12.23043 -11.69919 -11.52631 -11.31272 -11.18642 -11.04474 -10.84829 -10.79479 -10.71999 -10.53563 -10.47724 -10.20069 -10.05048 -9.86375 -9.78997 -9.54020 -9.47345 -8.65005 -8.53427 -8.12147 -6.67823 -5.83872 -3.27674 2.82943 3.15509 3.35906 3.41724 3.41977 3.43976 3.70081 4.45743 4.51137 4.72865 4.93647 4.94945 5.06299 5.17786 5.29566 5.35838 5.37665 5.45925 5.73509 5.77415 5.81608 5.88809 5.91108 5.96059 6.00753 6.07931 6.13714 6.23638 6.25890 6.31995 6.38425 6.47849 6.50140 6.56608 6.74865 6.86136 6.98742 7.01208 7.26750 7.48317 7.73718 8.02352 8.05912 8.37824 8.70932 8.89902 9.14187 9.76822 10.34414 11.23743 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.004168 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.840718 B = 6715.638411 C = 8126.091316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.109 4.109 4 C -0.138 4.138 5 C 0.156 3.844 6 H 0.106 0.894 7 N -0.733 5.733 8 C 0.709 3.291 9 N -0.874 5.874 10 O -0.560 6.560 11 C 0.497 3.503 12 O -0.526 6.526 13 N -0.599 5.599 14 C 0.077 3.923 15 C 0.159 3.841 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.067 0.933 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.904 3.096 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.132 3.868 26 C 0.099 3.901 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.395 0.605 37 H 0.391 0.609 38 H 0.411 0.589 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.099 0.901 43 H 0.255 0.745 44 H 0.024 0.976 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.196 9.133 -11.678 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.147 4.147 4 C -0.176 4.176 5 C 0.046 3.954 6 H 0.124 0.876 7 N -0.389 5.389 8 C 0.408 3.592 9 N -0.443 5.443 10 O -0.434 6.434 11 C 0.283 3.717 12 O -0.401 6.401 13 N -0.333 5.333 14 C -0.047 4.047 15 C 0.032 3.968 16 N -0.313 5.313 17 C -0.385 4.385 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.005 3.995 26 C -0.025 4.025 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.229 0.771 37 H 0.217 0.783 38 H 0.243 0.757 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.043 0.957 42 H 0.117 0.883 43 H 0.065 0.935 44 H 0.042 0.958 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.281 8.201 -11.918 18.346 hybrid contribution -0.208 0.697 0.747 1.043 sum -11.489 8.898 -11.171 18.329 Atomic orbital electron populations 1.21757 0.96153 1.01403 1.01403 1.21523 0.95433 0.96958 1.02496 1.21521 0.94709 0.96952 1.01485 1.22057 0.95741 0.94417 1.05400 1.20732 0.92756 0.96115 0.85780 0.87628 1.44710 1.56568 1.33244 1.04389 1.15845 0.79649 0.83248 0.80485 1.42984 1.59072 1.34449 1.07784 1.90983 1.39778 1.26889 1.85730 1.20750 0.90425 0.77451 0.83093 1.90689 1.64232 1.48968 1.36222 1.48030 1.07471 1.71018 1.06825 1.22807 0.93423 1.02157 0.86348 1.21246 0.84891 0.90405 1.00219 1.43964 1.00622 1.84192 1.02551 1.19174 1.03873 1.27093 0.88334 0.91561 1.25045 0.99319 0.96069 0.99033 1.70008 1.25499 1.26970 1.32133 0.86355 0.78021 0.77504 0.84798 1.21002 1.21610 1.20864 1.21291 0.95427 0.93481 0.89333 1.22125 0.79651 0.99884 1.00888 0.93179 0.92942 0.92786 0.92141 0.91484 0.92132 0.92359 0.89912 0.88852 0.77145 0.78262 0.75725 0.91911 0.91148 0.95747 0.88310 0.93472 0.95821 0.91688 0.90184 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.03 16 2 C -0.13 -1.41 5.93 -26.73 -0.16 -1.57 16 3 C -0.11 -1.20 5.10 -26.73 -0.14 -1.33 16 4 C -0.14 -1.95 4.22 -26.73 -0.11 -2.06 16 5 C 0.16 2.13 2.15 -69.09 -0.15 1.98 16 6 H 0.11 1.16 6.75 -51.93 -0.35 0.81 16 7 N -0.73 -8.52 4.66 -59.82 -0.28 -8.80 16 8 C 0.71 10.05 7.59 -86.92 -0.66 9.39 16 9 N -0.87 -8.03 8.88 27.63 0.25 -7.78 16 10 O -0.56 -10.97 13.03 -18.20 -0.24 -11.21 16 11 C 0.50 9.10 6.69 -10.98 -0.07 9.03 16 12 O -0.53 -11.46 13.08 -17.93 -0.23 -11.69 16 13 N -0.60 -11.11 2.94 -172.24 -0.51 -11.62 16 14 C 0.08 1.36 5.94 -3.37 -0.02 1.34 16 15 C 0.16 3.57 5.53 -3.36 -0.02 3.55 16 16 N -0.59 -14.50 2.97 -171.79 -0.51 -15.01 16 17 C -0.26 -6.82 9.58 -15.06 -0.14 -6.96 16 18 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 19 C 0.00 0.11 4.90 -17.43 -0.09 0.02 16 20 N -0.90 -25.23 11.20 55.49 0.62 -24.61 16 21 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 25 C 0.13 2.87 6.67 -3.62 -0.02 2.84 16 26 C 0.10 1.91 6.59 -3.62 -0.02 1.89 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 34 H 0.08 1.29 6.90 -51.93 -0.36 0.93 16 35 H 0.09 1.62 6.04 -51.93 -0.31 1.31 16 36 H 0.40 3.02 8.84 -40.82 -0.36 2.66 16 37 H 0.39 2.14 8.84 -40.82 -0.36 1.77 16 38 H 0.41 3.51 8.93 -40.82 -0.36 3.14 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.01 4.87 -51.93 -0.25 0.76 16 41 H 0.02 0.59 8.02 -51.92 -0.42 0.17 16 42 H 0.10 2.43 5.99 -51.93 -0.31 2.12 16 43 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 1.35 7.93 -51.93 -0.41 0.94 16 46 H 0.08 1.57 6.99 -51.93 -0.36 1.21 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -35.16 365.81 -9.27 -44.44 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.62 Total: 7.66 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: -1.24 Total: 17.09 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -0.43 Total: -67.83 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.47 Total: -22.90 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.16 -9.27 -44.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362610262.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.279 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds