Wall clock time and date at job start Fri Apr 10 2020 18:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46949 * 2 1 4 4 C 1.53001 * 109.46949 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46691 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46861 * 55.00591 * 5 4 3 7 7 N 1.46494 * 109.47581 * 295.00095 * 5 4 3 8 8 C 1.34770 * 120.00228 * 300.00379 * 7 5 4 9 9 N 1.34784 * 120.00089 * 180.02562 * 8 7 5 10 10 O 1.21587 * 119.99905 * 359.97438 * 8 7 5 11 11 C 1.50700 * 109.46937 * 175.00102 * 5 4 3 12 12 O 1.21279 * 120.00229 * 100.00190 * 11 5 4 13 13 N 1.34785 * 120.00071 * 280.00427 * 11 5 4 14 14 C 1.46963 * 120.59137 * 359.71799 * 13 11 5 15 15 C 1.53814 * 108.39676 * 124.75928 * 14 13 11 16 16 N 1.46966 * 108.57807 * 49.63258 * 15 14 13 17 17 C 1.36945 * 120.59034 * 124.62534 * 16 15 14 18 18 H 1.08001 * 119.99800 * 208.18073 * 17 16 15 19 19 C 1.38809 * 119.99881 * 28.18657 * 17 16 15 20 20 N 1.31623 * 120.00513 * 17.55479 * 19 17 16 21 21 Si 1.86799 * 119.99950 * 197.55670 * 19 17 16 22 22 H 1.48504 * 109.47144 * 59.99610 * 21 19 17 23 23 H 1.48495 * 109.47383 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47108 * 300.00036 * 21 19 17 25 25 C 1.46954 * 118.81549 * 304.64893 * 16 15 14 26 26 C 1.46966 * 120.59113 * 179.97438 * 13 11 5 27 27 H 1.08997 * 109.47132 * 60.00083 * 1 2 3 28 28 H 1.08999 * 109.46879 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46923 * 299.99733 * 1 2 3 30 30 H 1.09001 * 109.46923 * 240.00267 * 2 1 3 31 31 H 1.08997 * 109.47132 * 119.99917 * 2 1 3 32 32 H 1.09003 * 109.46769 * 59.99933 * 3 2 1 33 33 H 1.09000 * 109.46781 * 300.00288 * 3 2 1 34 34 H 1.08997 * 109.47132 * 299.99917 * 4 3 2 35 35 H 1.09001 * 109.46923 * 60.00267 * 4 3 2 36 36 H 0.97009 * 119.99536 * 120.00059 * 7 5 4 37 37 H 0.97000 * 119.99590 * 359.97438 * 9 8 7 38 38 H 0.97000 * 119.99752 * 180.02562 * 9 8 7 39 39 H 1.08998 * 109.60722 * 244.53955 * 14 13 11 40 40 H 1.08996 * 109.60954 * 5.05762 * 14 13 11 41 41 H 1.09009 * 109.74336 * 289.84888 * 15 14 13 42 42 H 1.09000 * 109.53628 * 169.30123 * 15 14 13 43 43 H 0.96994 * 120.00602 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.61490 * 295.48117 * 25 16 15 45 45 H 1.09005 * 109.61466 * 174.97004 * 25 16 15 46 46 H 1.09000 * 109.61139 * 354.95084 * 26 13 11 47 47 H 1.09002 * 109.60782 * 115.46277 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6449 3.4245 0.8414 7 7 3.6928 3.5394 -1.2523 8 6 4.1178 3.0434 -2.4311 9 7 3.7621 3.6457 -3.5832 10 8 4.8228 2.0531 -2.4553 11 6 5.5817 2.8870 0.1244 12 8 6.2717 3.0395 -0.8612 13 7 6.1582 2.7193 1.3312 14 6 5.3346 2.5396 2.5350 15 6 5.7622 1.2331 3.2251 16 7 7.2255 1.2328 3.3614 17 6 7.8112 1.0633 4.5876 18 1 8.7815 1.4937 4.7867 19 6 7.1578 0.3382 5.5746 20 7 6.1666 -0.4661 5.2532 21 14 7.6850 0.5038 7.3589 22 1 7.5325 1.9164 7.7911 23 1 6.8352 -0.3679 8.2092 24 1 9.1062 0.0953 7.4951 25 6 8.0490 1.4181 2.1584 26 6 7.6215 2.7184 1.4674 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9289 0.8908 35 1 3.9337 0.9286 -0.8892 36 1 3.1306 4.3297 -1.2329 37 1 3.1999 4.4359 -3.5639 38 1 4.0677 3.2884 -4.4317 39 1 5.4871 3.3806 3.2114 40 1 4.2834 2.4792 2.2534 41 1 5.4507 0.3795 2.6229 42 1 5.3029 1.1749 4.2119 43 1 5.7098 -0.9725 5.9429 44 1 7.9004 0.5778 1.4803 45 1 9.0999 1.4821 2.4406 46 1 8.0809 2.7763 0.4806 47 1 7.9334 3.5719 2.0694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362610262.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:26 Heat of formation + Delta-G solvation = -69.173654 kcal Electronic energy + Delta-G solvation = -27958.116155 eV Core-core repulsion = 24175.522291 eV Total energy + Delta-G solvation = -3782.593864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.74674 -40.17592 -38.30193 -37.20313 -35.54212 -35.17426 -34.40720 -33.23615 -31.93415 -31.19701 -28.98702 -27.50880 -25.40319 -24.46675 -23.69745 -22.85381 -21.88072 -21.42977 -20.02953 -19.64844 -18.58006 -18.11173 -17.56823 -17.04075 -16.71922 -16.42277 -16.20801 -15.66431 -15.50251 -15.30587 -15.22374 -15.09343 -15.02231 -14.78193 -14.31327 -14.15232 -13.62269 -13.49189 -13.31163 -13.16350 -12.73637 -12.60493 -12.48700 -12.25201 -12.17685 -12.06195 -11.95805 -11.87795 -11.74586 -11.64613 -11.44608 -11.15712 -10.77983 -10.56931 -10.43026 -9.83922 -9.73821 -8.63192 -7.86545 -5.34988 1.51352 1.52412 1.59858 1.65643 1.84365 2.23887 2.48569 2.54756 3.27549 3.49762 3.60260 3.70371 3.87772 3.95724 4.16289 4.20847 4.26293 4.29900 4.39134 4.44062 4.54427 4.59545 4.64853 4.76131 4.82106 4.84035 4.88186 5.02488 5.04073 5.06522 5.22195 5.25627 5.33834 5.40795 5.52213 5.52257 5.59077 5.63459 5.70123 6.01136 6.14406 6.37057 6.56546 7.12822 7.25075 7.28914 7.79770 7.89687 8.34370 9.18332 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.004168 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.840718 B = 6715.638411 C = 8126.091316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C -0.098 4.098 4 C -0.130 4.130 5 C 0.162 3.838 6 H 0.147 0.853 7 N -0.717 5.717 8 C 0.701 3.299 9 N -0.852 5.852 10 O -0.620 6.620 11 C 0.491 3.509 12 O -0.562 6.562 13 N -0.604 5.604 14 C 0.093 3.907 15 C 0.165 3.835 16 N -0.607 5.607 17 C -0.270 4.270 18 H 0.067 0.933 19 C -0.042 4.042 20 N -0.931 5.931 21 Si 0.969 3.031 22 H -0.274 1.274 23 H -0.293 1.293 24 H -0.281 1.281 25 C 0.133 3.867 26 C 0.109 3.891 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.419 0.581 37 H 0.412 0.588 38 H 0.416 0.584 39 H 0.076 0.924 40 H 0.108 0.892 41 H -0.004 1.004 42 H 0.078 0.922 43 H 0.253 0.747 44 H -0.001 1.001 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.141 11.614 -11.326 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C -0.136 4.136 4 C -0.168 4.168 5 C 0.052 3.948 6 H 0.164 0.836 7 N -0.375 5.375 8 C 0.399 3.601 9 N -0.422 5.422 10 O -0.498 6.498 11 C 0.278 3.722 12 O -0.440 6.440 13 N -0.337 5.337 14 C -0.030 4.030 15 C 0.038 3.962 16 N -0.330 5.330 17 C -0.399 4.399 18 H 0.085 0.915 19 C -0.238 4.238 20 N -0.576 5.576 21 Si 0.797 3.203 22 H -0.200 1.200 23 H -0.220 1.220 24 H -0.207 1.207 25 C 0.006 3.994 26 C -0.016 4.016 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.257 0.743 37 H 0.243 0.757 38 H 0.248 0.752 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.014 0.986 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.017 0.983 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.281 10.767 -11.598 20.659 hybrid contribution 0.450 -0.139 0.547 0.722 sum -12.831 10.628 -11.051 19.992 Atomic orbital electron populations 1.21717 0.94246 1.01871 1.02388 1.21532 0.97088 0.97044 1.01081 1.21473 0.91895 0.97022 1.03198 1.21930 0.98102 0.94184 1.02634 1.20742 0.89466 0.96586 0.88004 0.83589 1.44476 1.56275 1.33713 1.03018 1.16187 0.79256 0.82806 0.81870 1.42737 1.58375 1.34556 1.06555 1.90961 1.42537 1.29635 1.86710 1.21632 0.92410 0.76059 0.82084 1.90673 1.65616 1.50460 1.37243 1.48131 1.07115 1.71016 1.07479 1.22635 0.95093 0.99465 0.85818 1.21102 0.83842 0.92141 0.99086 1.44236 1.01689 1.84375 1.02719 1.19487 1.04170 1.26951 0.89336 0.91484 1.25768 0.99576 0.95822 1.02637 1.70162 1.26634 1.27838 1.33011 0.85328 0.77353 0.77626 0.79989 1.19951 1.21950 1.20705 1.21312 0.95681 0.94047 0.88323 1.21893 0.80728 0.98607 1.00326 0.92126 0.92862 0.91771 0.93722 0.92928 0.89686 0.91102 0.91920 0.92507 0.74317 0.75743 0.75202 0.90617 0.87410 0.98594 0.90419 0.93834 0.98291 0.91138 0.90690 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 71.98 0.71 -1.68 16 2 C -0.13 -2.80 5.93 30.60 0.18 -2.62 16 3 C -0.10 -1.93 5.10 30.60 0.16 -1.78 16 4 C -0.13 -3.58 4.22 30.59 0.13 -3.45 16 5 C 0.16 4.07 2.15 44.25 0.10 4.17 16 6 H 0.15 2.51 6.75 -2.39 -0.02 2.49 16 7 N -0.72 -14.76 4.66 -461.42 -2.15 -16.91 16 8 C 0.70 18.96 7.59 179.05 1.36 20.32 16 9 N -0.85 -13.88 8.88 -184.74 -1.64 -15.52 16 10 O -0.62 -24.69 13.03 18.47 0.24 -24.45 16 11 C 0.49 17.54 6.69 87.66 0.59 18.13 16 12 O -0.56 -24.58 13.08 19.44 0.25 -24.32 16 13 N -0.60 -21.91 2.94 -817.22 -2.40 -24.31 16 14 C 0.09 3.15 5.94 86.57 0.51 3.66 16 15 C 0.16 7.49 5.53 86.56 0.48 7.97 16 16 N -0.61 -30.28 2.97 -697.42 -2.07 -32.35 16 17 C -0.27 -14.50 9.58 84.03 0.80 -13.69 16 18 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16 19 C -0.04 -2.26 4.90 84.86 0.42 -1.85 16 20 N -0.93 -53.01 11.20 21.65 0.24 -52.77 16 21 Si 0.97 43.27 29.59 68.60 2.03 45.30 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 C 0.13 5.94 6.67 86.40 0.58 6.51 16 26 C 0.11 4.21 6.59 86.40 0.57 4.78 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.24 7.75 -2.39 -0.02 1.22 16 34 H 0.06 1.97 6.90 -2.39 -0.02 1.95 16 35 H 0.06 2.04 6.04 -2.39 -0.01 2.02 16 36 H 0.42 4.64 8.84 -92.70 -0.82 3.82 16 37 H 0.41 3.18 8.84 -92.71 -0.82 2.36 16 38 H 0.42 6.46 8.93 -92.71 -0.83 5.63 16 39 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.11 2.79 4.87 -2.39 -0.01 2.78 16 41 H 0.00 -0.20 8.02 -2.38 -0.02 -0.22 16 42 H 0.08 3.88 5.99 -2.39 -0.01 3.87 16 43 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 44 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.07 2.99 7.93 -2.38 -0.02 2.98 16 46 H 0.07 2.98 6.99 -2.39 -0.02 2.96 16 47 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -79.94 365.81 -0.38 -80.32 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: -1.46 Total: 24.55 kcal Atomic # 6 Polarization: 33.88 SS G_CDS: 6.58 Total: 40.46 kcal Atomic # 7 Polarization: -133.84 SS G_CDS: -8.02 Total: -141.86 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: 0.50 Total: -48.77 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -79.94 -0.38 -80.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362610262.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.142 kcal (2) G-P(sol) polarization free energy of solvation -79.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds