Wall clock time and date at job start Fri Apr 10 2020 18:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99879 * 2 1 4 4 C 1.34772 * 119.99791 * 179.97438 * 2 1 3 5 5 O 1.21583 * 120.00778 * 343.78844 * 4 2 1 6 6 N 1.34781 * 119.99661 * 163.78865 * 4 2 1 7 7 C 1.47081 * 120.87929 * 349.34941 * 6 4 2 8 8 C 1.53238 * 108.52318 * 231.20645 * 7 6 4 9 9 N 1.46896 * 109.34246 * 306.17263 * 8 7 6 10 10 C 1.46894 * 111.00374 * 187.24923 * 9 8 7 11 11 C 1.50702 * 109.46972 * 71.06160 * 10 9 8 12 12 O 1.21295 * 119.99648 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00189 * 180.02562 * 11 10 9 14 14 C 1.37098 * 120.00203 * 179.97438 * 13 11 10 15 15 H 1.08000 * 119.99973 * 0.02562 * 14 13 11 16 16 C 1.38948 * 120.00177 * 179.97438 * 14 13 11 17 17 N 1.31413 * 120.00081 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99945 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47358 * 59.99816 * 18 16 14 20 20 H 1.48504 * 109.47218 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46910 * 299.99740 * 18 16 14 22 22 C 1.46904 * 111.26727 * 63.10144 * 9 8 7 23 23 C 1.53009 * 109.49125 * 56.85603 * 22 9 8 24 24 C 1.53000 * 109.49407 * 176.90762 * 22 9 8 25 25 C 1.47074 * 120.88394 * 169.37750 * 6 4 2 26 26 H 1.09002 * 109.47125 * 239.99815 * 1 2 3 27 27 H 1.08998 * 109.47297 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46767 * 120.00309 * 1 2 3 29 29 H 1.09003 * 109.47278 * 276.10333 * 3 2 1 30 30 H 1.09000 * 109.47239 * 36.10114 * 3 2 1 31 31 H 1.08993 * 109.47026 * 156.09883 * 3 2 1 32 32 H 1.09007 * 109.62324 * 111.49838 * 7 6 4 33 33 H 1.08996 * 109.78786 * 351.01711 * 7 6 4 34 34 H 1.08998 * 109.49296 * 186.21564 * 8 7 6 35 35 H 1.09001 * 109.48810 * 66.13289 * 8 7 6 36 36 H 1.08999 * 109.47597 * 191.06079 * 10 9 8 37 37 H 1.09004 * 109.47375 * 311.06474 * 10 9 8 38 38 H 0.96996 * 120.00151 * 359.97438 * 13 11 10 39 39 H 0.96999 * 120.00081 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.46734 * 60.00028 * 23 22 9 41 41 H 1.08999 * 109.47095 * 299.99862 * 23 22 9 42 42 H 1.09000 * 109.47043 * 179.97438 * 23 22 9 43 43 H 1.09006 * 109.47352 * 294.51163 * 24 22 9 44 44 H 1.09001 * 109.47123 * 54.51203 * 24 22 9 45 45 H 1.09001 * 109.47107 * 174.51108 * 24 22 9 46 46 H 1.09009 * 109.62940 * 9.08036 * 25 6 4 47 47 H 1.08999 * 109.63095 * 248.50109 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5673 -2.1991 0.2949 6 7 3.4465 -1.1905 -0.3254 7 6 4.1010 -0.0081 -0.9056 8 6 4.8390 -0.4357 -2.1787 9 7 5.7393 -1.5537 -1.8668 10 6 6.5905 -1.8812 -3.0184 11 6 7.6084 -0.7880 -3.2177 12 8 7.6230 0.1700 -2.4738 13 7 8.5019 -0.8742 -4.2230 14 6 9.4276 0.1207 -4.4047 15 1 9.4411 0.9733 -3.7419 16 6 10.3490 0.0315 -5.4408 17 7 10.3329 -1.0061 -6.2470 18 14 11.6107 1.3867 -5.6878 19 1 12.4513 1.5085 -4.4697 20 1 12.4709 1.0560 -6.8523 21 1 10.9127 2.6733 -5.9382 22 6 4.9883 -2.7327 -1.4151 23 6 3.9692 -3.1296 -2.4852 24 6 5.9558 -3.8936 -1.1760 25 6 4.2565 -2.3992 -0.1108 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 2.2845 1.6380 -1.0219 30 1 1.6601 1.9985 0.6055 31 1 3.1928 1.1136 0.4163 32 1 4.8131 0.4040 -0.1905 33 1 3.3522 0.7447 -1.1517 34 1 5.4200 0.4033 -2.5615 35 1 4.1150 -0.7505 -2.9303 36 1 7.1029 -2.8256 -2.8347 37 1 5.9735 -1.9706 -3.9126 38 1 8.4900 -1.6401 -4.8181 39 1 10.9760 -1.0682 -6.9706 40 1 4.4900 -3.3645 -3.4135 41 1 3.2795 -2.3027 -2.6546 42 1 3.4124 -4.0047 -2.1499 43 1 6.4053 -4.1930 -2.1229 44 1 6.7384 -3.5781 -0.4860 45 1 5.4130 -4.7368 -0.7488 46 1 3.6081 -3.2299 0.1680 47 1 4.9836 -2.2170 0.6806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408132277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:43 Heat of formation + Delta-G solvation = 2.414324 kcal Electronic energy + Delta-G solvation = -27863.515625 eV Core-core repulsion = 24084.026048 eV Total energy + Delta-G solvation = -3779.489577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98727 -39.20088 -37.65250 -36.00163 -34.71843 -33.94050 -32.66745 -31.23130 -29.31750 -28.86141 -27.34917 -26.82538 -26.42061 -24.88679 -23.54498 -22.47060 -20.08740 -19.32189 -18.42685 -17.80847 -17.13976 -16.69055 -16.33162 -16.18286 -15.17515 -15.02027 -14.59149 -14.56313 -14.33417 -14.20691 -14.04419 -13.67159 -13.52154 -13.33922 -13.20221 -12.81601 -12.56435 -12.40156 -12.19905 -12.15230 -11.89780 -11.65815 -11.47006 -11.27793 -11.10373 -11.03939 -10.95370 -10.67211 -10.53258 -10.44563 -10.21196 -9.94028 -9.46809 -8.98985 -8.58885 -8.29085 -7.95928 -7.79468 -6.41217 -3.82055 2.49773 3.03725 3.19492 3.25351 3.29267 3.60934 3.91160 3.94823 4.22408 4.66814 4.73250 4.89386 4.94663 5.00020 5.07485 5.12077 5.23979 5.25464 5.34477 5.36845 5.42838 5.45195 5.54184 5.60187 5.64334 5.74148 5.76983 5.83745 5.86463 5.96896 6.00209 6.06236 6.16624 6.20596 6.25804 6.30524 6.38835 6.52833 6.81708 7.28047 7.40552 7.55034 7.78174 8.06851 8.47186 8.62726 9.18680 9.55754 10.07655 10.76555 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.023013 B = 0.003254 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.421721 B = 8601.753209 C = 9394.989122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.644 5.644 3 C 0.070 3.930 4 C 0.711 3.289 5 O -0.591 6.591 6 N -0.623 5.623 7 C 0.079 3.921 8 C 0.040 3.960 9 N -0.500 5.500 10 C 0.040 3.960 11 C 0.445 3.555 12 O -0.578 6.578 13 N -0.566 5.566 14 C -0.298 4.298 15 H 0.102 0.898 16 C 0.022 3.978 17 N -0.903 5.903 18 Si 0.930 3.070 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.092 3.908 23 C -0.174 4.174 24 C -0.143 4.143 25 C 0.148 3.852 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.032 0.968 36 H 0.094 0.906 37 H 0.047 0.953 38 H 0.391 0.609 39 H 0.272 0.728 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.754 -0.595 8.844 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.383 5.383 3 C -0.072 4.072 4 C 0.414 3.586 5 O -0.469 6.469 6 N -0.360 5.360 7 C -0.042 4.042 8 C -0.089 4.089 9 N -0.224 5.224 10 C -0.092 4.092 11 C 0.231 3.769 12 O -0.462 6.462 13 N -0.203 5.203 14 C -0.428 4.428 15 H 0.120 0.880 16 C -0.179 4.179 17 N -0.544 5.544 18 Si 0.757 3.243 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.200 1.200 22 C 0.001 3.999 23 C -0.233 4.233 24 C -0.201 4.201 25 C 0.025 3.975 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.050 0.950 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.224 0.776 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.633 -0.398 9.737 18.422 hybrid contribution 0.281 0.011 -1.423 1.450 sum -15.353 -0.387 8.314 17.464 Atomic orbital electron populations 1.21434 0.77909 1.01871 1.02066 1.46828 1.06842 1.04941 1.79721 1.22412 0.98358 0.85450 1.00978 1.15847 0.81162 0.83463 0.78136 1.90875 1.67898 1.32114 1.56053 1.47339 1.07966 1.15110 1.65553 1.23072 0.97369 0.88295 0.95492 1.22615 0.94579 0.95941 0.95732 1.61755 1.20950 1.05027 1.34672 1.21973 0.95490 0.99546 0.92142 1.19770 0.84677 0.88691 0.83779 1.90487 1.74241 1.34518 1.46969 1.41865 1.28894 1.22263 1.27236 1.19632 1.08571 1.01555 1.13042 0.88004 1.25247 0.98774 0.97958 0.95955 1.69604 1.37574 1.29217 1.18033 0.85936 0.80027 0.80583 0.77768 1.19908 1.21026 1.19963 1.21455 0.92758 0.91042 0.94652 1.22402 0.99765 1.01818 0.99307 1.21918 0.99159 0.96322 1.02682 1.21604 0.93033 0.86834 0.96067 0.92199 0.90817 0.92710 0.91880 0.91619 0.89455 0.90424 0.86907 0.87749 0.95016 0.88752 0.93502 0.77572 0.91856 0.92510 0.92399 0.92169 0.91751 0.91173 0.92002 0.88934 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.97 10.23 59.85 0.61 1.58 16 2 N -0.64 -7.03 3.26 -210.47 -0.69 -7.71 16 3 C 0.07 0.55 8.46 59.85 0.51 1.06 16 4 C 0.71 10.08 7.99 -86.92 -0.69 9.38 16 5 O -0.59 -10.27 15.89 5.29 0.08 -10.19 16 6 N -0.62 -8.30 2.44 -178.19 -0.43 -8.73 16 7 C 0.08 0.99 4.61 -3.60 -0.02 0.97 16 8 C 0.04 0.60 4.89 -3.70 -0.02 0.58 16 9 N -0.50 -7.97 4.07 -220.11 -0.89 -8.87 16 10 C 0.04 0.69 4.59 -4.98 -0.02 0.67 16 11 C 0.45 10.16 7.45 -10.99 -0.08 10.08 16 12 O -0.58 -14.88 14.37 5.54 0.08 -14.80 16 13 N -0.57 -14.04 5.29 -10.96 -0.06 -14.10 16 14 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 15 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 16 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 17 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 18 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 22 C 0.09 1.23 0.69 -131.47 -0.09 1.14 16 23 C -0.17 -2.27 7.69 37.16 0.29 -1.99 16 24 C -0.14 -1.71 7.86 37.16 0.29 -1.42 16 25 C 0.15 1.98 5.29 -3.61 -0.02 1.96 16 26 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 27 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.44 6.69 -51.93 -0.35 0.09 16 30 H 0.07 0.38 8.05 -51.93 -0.42 -0.03 16 31 H 0.09 0.74 5.25 -51.93 -0.27 0.47 16 32 H 0.08 1.01 7.70 -51.93 -0.40 0.61 16 33 H 0.11 1.15 3.26 -69.95 -0.23 0.92 16 34 H 0.10 1.86 6.27 -51.93 -0.33 1.53 16 35 H 0.03 0.47 6.10 -51.93 -0.32 0.16 16 36 H 0.09 1.52 5.50 -51.93 -0.29 1.23 16 37 H 0.05 0.78 7.22 -51.93 -0.38 0.40 16 38 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.06 0.73 6.96 -51.93 -0.36 0.37 16 41 H 0.06 0.82 5.93 -51.93 -0.31 0.51 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.76 6.34 -51.93 -0.33 0.44 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.27 7.05 -51.92 -0.37 0.90 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -32.92 356.55 -7.43 -40.36 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -7.11 Total: 10.33 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 0.51 Total: 16.19 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -1.35 Total: -63.05 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: 0.16 Total: -24.99 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.92 -7.43 -40.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408132277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.772 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds