Wall clock time and date at job start Fri Apr 10 2020 18:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99879 * 2 1 4 4 C 1.34772 * 119.99791 * 179.97438 * 2 1 3 5 5 O 1.21583 * 120.00778 * 343.78844 * 4 2 1 6 6 N 1.34781 * 119.99661 * 163.78865 * 4 2 1 7 7 C 1.47081 * 120.87929 * 349.34941 * 6 4 2 8 8 C 1.53238 * 108.52318 * 231.20645 * 7 6 4 9 9 N 1.46896 * 109.34246 * 306.17263 * 8 7 6 10 10 C 1.46894 * 111.00374 * 187.24923 * 9 8 7 11 11 C 1.50702 * 109.46972 * 71.06160 * 10 9 8 12 12 O 1.21295 * 119.99648 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00189 * 180.02562 * 11 10 9 14 14 C 1.37098 * 120.00203 * 179.97438 * 13 11 10 15 15 H 1.08000 * 119.99973 * 0.02562 * 14 13 11 16 16 C 1.38948 * 120.00177 * 179.97438 * 14 13 11 17 17 N 1.31413 * 120.00081 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99945 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47358 * 59.99816 * 18 16 14 20 20 H 1.48504 * 109.47218 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46910 * 299.99740 * 18 16 14 22 22 C 1.46904 * 111.26727 * 63.10144 * 9 8 7 23 23 C 1.53009 * 109.49125 * 56.85603 * 22 9 8 24 24 C 1.53000 * 109.49407 * 176.90762 * 22 9 8 25 25 C 1.47074 * 120.88394 * 169.37750 * 6 4 2 26 26 H 1.09002 * 109.47125 * 239.99815 * 1 2 3 27 27 H 1.08998 * 109.47297 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46767 * 120.00309 * 1 2 3 29 29 H 1.09003 * 109.47278 * 276.10333 * 3 2 1 30 30 H 1.09000 * 109.47239 * 36.10114 * 3 2 1 31 31 H 1.08993 * 109.47026 * 156.09883 * 3 2 1 32 32 H 1.09007 * 109.62324 * 111.49838 * 7 6 4 33 33 H 1.08996 * 109.78786 * 351.01711 * 7 6 4 34 34 H 1.08998 * 109.49296 * 186.21564 * 8 7 6 35 35 H 1.09001 * 109.48810 * 66.13289 * 8 7 6 36 36 H 1.08999 * 109.47597 * 191.06079 * 10 9 8 37 37 H 1.09004 * 109.47375 * 311.06474 * 10 9 8 38 38 H 0.96996 * 120.00151 * 359.97438 * 13 11 10 39 39 H 0.96999 * 120.00081 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.46734 * 60.00028 * 23 22 9 41 41 H 1.08999 * 109.47095 * 299.99862 * 23 22 9 42 42 H 1.09000 * 109.47043 * 179.97438 * 23 22 9 43 43 H 1.09006 * 109.47352 * 294.51163 * 24 22 9 44 44 H 1.09001 * 109.47123 * 54.51203 * 24 22 9 45 45 H 1.09001 * 109.47107 * 174.51108 * 24 22 9 46 46 H 1.09009 * 109.62940 * 9.08036 * 25 6 4 47 47 H 1.08999 * 109.63095 * 248.50109 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5673 -2.1991 0.2949 6 7 3.4465 -1.1905 -0.3254 7 6 4.1010 -0.0081 -0.9056 8 6 4.8390 -0.4357 -2.1787 9 7 5.7393 -1.5537 -1.8668 10 6 6.5905 -1.8812 -3.0184 11 6 7.6084 -0.7880 -3.2177 12 8 7.6230 0.1700 -2.4738 13 7 8.5019 -0.8742 -4.2230 14 6 9.4276 0.1207 -4.4047 15 1 9.4411 0.9733 -3.7419 16 6 10.3490 0.0315 -5.4408 17 7 10.3329 -1.0061 -6.2470 18 14 11.6107 1.3867 -5.6878 19 1 12.4513 1.5085 -4.4697 20 1 12.4709 1.0560 -6.8523 21 1 10.9127 2.6733 -5.9382 22 6 4.9883 -2.7327 -1.4151 23 6 3.9692 -3.1296 -2.4852 24 6 5.9558 -3.8936 -1.1760 25 6 4.2565 -2.3992 -0.1108 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 2.2845 1.6380 -1.0219 30 1 1.6601 1.9985 0.6055 31 1 3.1928 1.1136 0.4163 32 1 4.8131 0.4040 -0.1905 33 1 3.3522 0.7447 -1.1517 34 1 5.4200 0.4033 -2.5615 35 1 4.1150 -0.7505 -2.9303 36 1 7.1029 -2.8256 -2.8347 37 1 5.9735 -1.9706 -3.9126 38 1 8.4900 -1.6401 -4.8181 39 1 10.9760 -1.0682 -6.9706 40 1 4.4900 -3.3645 -3.4135 41 1 3.2795 -2.3027 -2.6546 42 1 3.4124 -4.0047 -2.1499 43 1 6.4053 -4.1930 -2.1229 44 1 6.7384 -3.5781 -0.4860 45 1 5.4130 -4.7368 -0.7488 46 1 3.6081 -3.2299 0.1680 47 1 4.9836 -2.2170 0.6806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408132277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:42 Heat of formation + Delta-G solvation = -21.468899 kcal Electronic energy + Delta-G solvation = -27864.551279 eV Core-core repulsion = 24084.026048 eV Total energy + Delta-G solvation = -3780.525231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.06222 -40.53123 -39.28370 -37.00699 -36.01606 -35.64628 -33.88213 -33.22115 -30.57674 -29.70183 -28.37047 -27.83427 -27.73983 -26.33980 -24.94413 -23.55137 -21.17850 -20.95691 -19.94896 -19.43467 -18.19219 -17.91829 -17.53406 -17.25119 -16.71806 -16.42301 -16.12407 -15.73650 -15.64472 -15.46133 -15.29020 -14.86228 -14.84786 -14.56051 -14.21068 -13.86503 -13.75280 -13.50142 -13.47341 -13.35874 -12.95573 -12.94488 -12.88008 -12.70280 -12.40126 -12.31899 -12.14840 -12.11233 -12.09975 -11.84434 -11.66431 -11.40754 -10.98649 -10.29708 -9.99099 -9.94410 -9.41215 -9.07702 -8.42775 -5.91002 1.41806 1.43472 1.53953 1.56486 1.97576 2.10659 2.30042 2.63707 2.79052 3.24230 3.41306 3.67128 3.85290 3.94377 4.01473 4.10715 4.20471 4.27132 4.39523 4.40893 4.45219 4.51549 4.55236 4.56518 4.65017 4.69741 4.72931 4.76676 4.85109 4.89021 4.91782 4.93729 4.95674 5.03209 5.18680 5.30304 5.37852 5.44266 5.59555 5.79783 5.95640 6.11329 6.22688 6.64878 6.78837 7.17139 7.42486 7.61627 8.17077 8.74558 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.023013 B = 0.003254 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.421721 B = 8601.753209 C = 9394.989122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.644 5.644 3 C 0.064 3.936 4 C 0.704 3.296 5 O -0.629 6.629 6 N -0.622 5.622 7 C 0.088 3.912 8 C 0.042 3.958 9 N -0.513 5.513 10 C 0.053 3.947 11 C 0.446 3.554 12 O -0.609 6.609 13 N -0.577 5.577 14 C -0.329 4.329 15 H 0.081 0.919 16 C -0.014 4.014 17 N -0.923 5.923 18 Si 0.991 3.009 19 H -0.272 1.272 20 H -0.273 1.273 21 H -0.271 1.271 22 C 0.095 3.905 23 C -0.166 4.166 24 C -0.141 4.141 25 C 0.149 3.851 26 H 0.049 0.951 27 H 0.109 0.891 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.394 0.606 39 H 0.276 0.724 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.443 -0.163 8.914 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.381 5.381 3 C -0.077 4.077 4 C 0.407 3.593 5 O -0.510 6.510 6 N -0.359 5.359 7 C -0.033 4.033 8 C -0.087 4.087 9 N -0.238 5.238 10 C -0.077 4.077 11 C 0.233 3.767 12 O -0.495 6.495 13 N -0.215 5.215 14 C -0.458 4.458 15 H 0.099 0.901 16 C -0.214 4.214 17 N -0.565 5.565 18 Si 0.815 3.185 19 H -0.197 1.197 20 H -0.198 1.198 21 H -0.196 1.196 22 C 0.004 3.996 23 C -0.225 4.225 24 C -0.199 4.199 25 C 0.025 3.975 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.227 0.773 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.340 0.050 9.806 19.057 hybrid contribution 0.421 -0.103 -1.384 1.451 sum -15.919 -0.053 8.421 18.010 Atomic orbital electron populations 1.21594 0.76658 1.04004 1.01280 1.46996 1.07770 1.04887 1.78487 1.22568 0.98198 0.84610 1.02372 1.16080 0.81194 0.83984 0.78048 1.90842 1.68631 1.33766 1.57798 1.47331 1.07910 1.15213 1.65400 1.23130 0.97707 0.88444 0.94011 1.22550 0.94173 0.94768 0.97176 1.61733 1.21759 1.06348 1.33952 1.21807 0.94634 0.97819 0.93486 1.20692 0.84503 0.89214 0.82268 1.90463 1.75038 1.36180 1.47787 1.41935 1.29334 1.22077 1.28114 1.19622 1.10362 1.02101 1.13761 0.90102 1.26009 1.00057 1.00058 0.95235 1.69672 1.38193 1.30349 1.18252 0.85015 0.77678 0.77930 0.77889 1.19744 1.19815 1.19604 1.21516 0.92933 0.90463 0.94645 1.22316 0.99354 1.01579 0.99214 1.21920 0.98839 0.96360 1.02772 1.21580 0.92923 0.87017 0.95972 0.93194 0.87204 0.93353 0.90426 0.88733 0.90210 0.90961 0.84305 0.90649 0.94664 0.86994 0.92203 0.77260 0.91449 0.92217 0.93642 0.91405 0.91512 0.91900 0.89894 0.89168 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.67 10.23 127.77 1.31 2.97 16 2 N -0.64 -12.85 3.26 -938.07 -3.06 -15.91 16 3 C 0.06 0.83 8.46 127.77 1.08 1.91 16 4 C 0.70 19.32 7.99 179.05 1.43 20.75 16 5 O -0.63 -21.68 15.89 -3.98 -0.06 -21.74 16 6 N -0.62 -16.03 2.44 -835.94 -2.04 -18.07 16 7 C 0.09 2.13 4.61 86.35 0.40 2.52 16 8 C 0.04 1.25 4.89 86.38 0.42 1.68 16 9 N -0.51 -16.07 4.07 -850.29 -3.46 -19.53 16 10 C 0.05 1.83 4.59 85.56 0.39 2.22 16 11 C 0.45 20.59 7.45 87.66 0.65 21.24 16 12 O -0.61 -32.02 14.37 -3.08 -0.04 -32.06 16 13 N -0.58 -29.09 5.29 -306.98 -1.62 -30.71 16 14 C -0.33 -18.33 9.68 84.04 0.81 -17.51 16 15 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 16 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 17 N -0.92 -49.62 13.05 21.66 0.28 -49.34 16 18 Si 0.99 42.42 29.55 68.60 2.03 44.45 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 C 0.09 2.42 0.69 3.61 0.00 2.43 16 23 C -0.17 -4.10 7.69 71.99 0.55 -3.54 16 24 C -0.14 -3.14 7.86 71.98 0.57 -2.58 16 25 C 0.15 3.85 5.29 86.35 0.46 4.31 16 26 H 0.05 0.88 8.12 -2.39 -0.02 0.86 16 27 H 0.11 0.89 7.87 -2.39 -0.02 0.87 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.84 6.69 -2.39 -0.02 0.82 16 30 H 0.09 0.76 8.05 -2.39 -0.02 0.74 16 31 H 0.08 1.20 5.25 -2.39 -0.01 1.19 16 32 H 0.07 1.84 7.70 -2.38 -0.02 1.82 16 33 H 0.14 2.58 3.26 -19.32 -0.06 2.52 16 34 H 0.08 2.72 6.27 -2.39 -0.01 2.71 16 35 H 0.04 1.02 6.10 -2.39 -0.01 1.01 16 36 H 0.11 3.46 5.50 -2.39 -0.01 3.45 16 37 H 0.06 1.92 7.22 -2.39 -0.02 1.90 16 38 H 0.39 19.08 7.90 -92.71 -0.73 18.35 16 39 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 40 H 0.06 1.43 6.96 -2.39 -0.02 1.41 16 41 H 0.04 1.23 5.93 -2.39 -0.01 1.22 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.45 6.34 -2.38 -0.02 1.44 16 44 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.09 2.41 7.05 -2.38 -0.02 2.39 16 47 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -71.72 356.55 0.78 -70.94 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.21 Total: 35.87 kcal Atomic # 6 Polarization: 27.57 SS G_CDS: 8.54 Total: 36.12 kcal Atomic # 7 Polarization: -123.67 SS G_CDS: -9.89 Total: -133.57 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -0.11 Total: -53.80 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -71.72 0.78 -70.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408132277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.467 kcal (2) G-P(sol) polarization free energy of solvation -71.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds