Wall clock time and date at job start Fri Apr 10 2020 18:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.53557 * 2 1 4 4 C 1.53117 * 109.49926 * 239.90224 * 2 1 3 5 5 C 1.53126 * 109.16153 * 182.40111 * 4 2 1 6 6 C 1.53044 * 109.27419 * 57.65494 * 5 4 2 7 7 N 1.46846 * 109.52329 * 300.82222 * 6 5 4 8 8 C 1.46850 * 111.19560 * 61.74375 * 7 6 5 9 9 H 1.08997 * 109.46857 * 58.26671 * 8 7 6 10 10 C 1.53006 * 109.45638 * 178.23968 * 8 7 6 11 11 N 1.46494 * 109.47522 * 304.99657 * 10 8 7 12 12 C 1.34778 * 120.00180 * 180.02562 * 11 10 8 13 13 O 1.21589 * 119.99662 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99867 * 180.02562 * 12 11 10 15 15 C 1.46509 * 119.99923 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.47002 * 179.97438 * 15 14 12 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47459 * 59.99812 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47211 * 300.00250 * 23 21 19 27 27 H 1.09007 * 109.47106 * 299.90029 * 1 2 3 28 28 H 1.08995 * 109.47633 * 59.89714 * 1 2 3 29 29 H 1.08995 * 109.47371 * 179.90147 * 1 2 3 30 30 H 1.09004 * 109.46719 * 180.10150 * 3 2 1 31 31 H 1.09002 * 109.46998 * 300.09573 * 3 2 1 32 32 H 1.08999 * 109.47015 * 60.10407 * 3 2 1 33 33 H 1.09003 * 109.52347 * 62.50026 * 4 2 1 34 34 H 1.08996 * 109.57904 * 302.34211 * 4 2 1 35 35 H 1.08993 * 109.50142 * 297.71832 * 5 4 2 36 36 H 1.09000 * 109.53701 * 177.61499 * 5 4 2 37 37 H 1.08997 * 109.46058 * 180.80585 * 6 5 4 38 38 H 1.09004 * 109.44983 * 60.82866 * 6 5 4 39 39 H 1.00900 * 110.99951 * 297.64192 * 7 6 5 40 40 H 1.09003 * 109.46790 * 184.99643 * 10 8 7 41 41 H 1.09001 * 109.46992 * 65.00457 * 10 8 7 42 42 H 0.97003 * 119.99886 * 0.02562 * 11 10 8 43 43 H 0.97003 * 120.00202 * 359.97438 * 14 12 11 44 44 H 1.09003 * 109.46564 * 59.99951 * 15 14 12 45 45 H 1.08993 * 109.46901 * 300.00286 * 15 14 12 46 46 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 47 47 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4420 0.0000 4 6 2.0411 -0.7238 -1.2487 5 6 3.5711 -0.7719 -1.2109 6 6 4.0229 -1.4730 0.0723 7 7 3.5093 -0.7421 1.2378 8 6 2.0409 -0.7235 1.2479 9 1 1.6647 -1.7465 1.2542 10 6 1.5492 0.0080 2.4986 11 7 2.1338 -0.6133 3.6894 12 6 1.8397 -0.1325 4.9137 13 8 1.0895 0.8173 5.0297 14 7 2.3780 -0.7038 6.0092 15 6 2.0588 -0.1808 7.3400 16 6 2.7828 -0.9903 8.3848 17 8 3.4958 -1.9129 8.0507 18 7 2.6389 -0.6882 9.6904 19 6 3.2932 -1.4281 10.6413 20 1 3.9274 -2.2502 10.3438 21 6 3.1404 -1.1204 11.9876 22 7 2.3683 -0.1205 12.3495 23 14 4.0324 -2.1280 13.2831 24 1 5.4975 -2.0375 13.0585 25 1 3.7044 -1.6014 14.6323 26 1 3.6039 -3.5468 13.1884 27 1 -0.3634 0.5123 0.8909 28 1 -0.3634 0.5154 -0.8890 29 1 -0.3634 -1.0276 -0.0018 30 1 3.1317 1.4407 -0.0018 31 1 1.6774 1.9567 -0.8891 32 1 1.6804 1.9556 0.8909 33 1 1.7155 -0.1870 -2.1398 34 1 1.6451 -1.7391 -1.2702 35 1 3.9676 0.2431 -1.2299 36 1 3.9400 -1.3230 -2.0760 37 1 5.1120 -1.4962 0.1092 38 1 3.6372 -2.4925 0.0840 39 1 3.8831 0.1945 1.2707 40 1 0.4623 -0.0548 2.5524 41 1 1.8506 1.0544 2.4495 42 1 2.7326 -1.3708 3.5968 43 1 2.9768 -1.4614 5.9166 44 1 0.9840 -0.2486 7.5087 45 1 2.3719 0.8611 7.4056 46 1 2.0691 0.0499 9.9576 47 1 2.2619 0.0946 13.2894 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418175362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:51 Heat of formation + Delta-G solvation = -81.666821 kcal Electronic energy + Delta-G solvation = -26115.243903 eV Core-core repulsion = 22332.108294 eV Total energy + Delta-G solvation = -3783.135609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63382 -39.48002 -38.10262 -34.88789 -34.28730 -34.20771 -33.54300 -31.81219 -31.30622 -28.26042 -27.76760 -26.92932 -25.87479 -24.32952 -22.69439 -21.62352 -20.57307 -19.51473 -19.13239 -18.21643 -17.85598 -16.53470 -15.91884 -15.70793 -15.43429 -15.32509 -15.21093 -14.87326 -14.49510 -14.35966 -14.08036 -13.97658 -13.50005 -13.39118 -13.31186 -13.12530 -12.45566 -12.39893 -12.10941 -12.07126 -12.01948 -11.88400 -11.73415 -11.59244 -11.58058 -11.27457 -11.06725 -10.74671 -10.50456 -10.47582 -10.27458 -9.92380 -9.58102 -8.99962 -8.66618 -8.56397 -8.44395 -8.05106 -6.46932 -3.88843 2.95026 3.17009 3.24225 3.28531 3.53253 3.81077 3.86179 4.12945 4.22977 4.28925 4.34241 4.58670 4.69894 4.83830 4.86562 4.94337 4.98361 5.01422 5.13822 5.21751 5.29720 5.31668 5.37454 5.48119 5.51930 5.56045 5.61779 5.63733 5.72141 5.77986 5.81599 5.94834 5.99622 6.01918 6.08411 6.14851 6.60196 6.74169 6.87261 7.05049 7.29160 7.50016 7.97178 8.40026 8.50591 8.93805 9.09261 9.44764 9.93013 10.70014 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.033273 B = 0.002144 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.327002 B =13054.107933 C =13612.905271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.107 4.107 5 C -0.161 4.161 6 C 0.057 3.943 7 N -0.678 5.678 8 C 0.086 3.914 9 H 0.088 0.912 10 C 0.145 3.855 11 N -0.739 5.739 12 C 0.703 3.297 13 O -0.604 6.604 14 N -0.725 5.725 15 C 0.129 3.871 16 C 0.430 3.570 17 O -0.597 6.597 18 N -0.551 5.551 19 C -0.304 4.304 20 H 0.105 0.895 21 C 0.025 3.975 22 N -0.896 5.896 23 Si 0.934 3.066 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.344 0.656 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.403 0.597 43 H 0.407 0.593 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.396 0.604 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.214 0.800 -26.960 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 C -0.208 4.208 4 C -0.144 4.144 5 C -0.200 4.200 6 C -0.072 4.072 7 N -0.308 5.308 8 C -0.025 4.025 9 H 0.106 0.894 10 C 0.020 3.980 11 N -0.395 5.395 12 C 0.403 3.597 13 O -0.484 6.484 14 N -0.382 5.382 15 C 0.001 3.999 16 C 0.215 3.785 17 O -0.484 6.484 18 N -0.186 5.186 19 C -0.434 4.434 20 H 0.122 0.878 21 C -0.178 4.178 22 N -0.536 5.536 23 Si 0.760 3.240 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.198 1.198 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.163 0.837 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.238 0.762 43 H 0.244 0.756 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.230 0.770 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.412 0.591 -26.388 26.432 hybrid contribution 0.399 -0.008 -0.019 0.399 sum -1.013 0.583 -26.407 26.433 Atomic orbital electron populations 1.21908 0.93867 1.02104 1.02347 1.21160 0.96476 0.96033 0.95805 1.22031 1.00958 0.95244 1.02529 1.21610 0.95300 1.00456 0.97066 1.22316 0.96342 1.01571 0.99763 1.22019 1.00004 0.97940 0.87258 1.60643 1.06431 1.22252 1.41469 1.21854 0.88149 0.99839 0.92662 0.89428 1.21278 0.97799 0.96725 0.82165 1.44871 1.53022 1.37725 1.03895 1.15884 0.80849 0.82516 0.80496 1.90889 1.41302 1.30137 1.86084 1.44754 1.51984 1.37259 1.04238 1.20757 1.00145 0.97837 0.81190 1.19797 0.87038 0.87763 0.83856 1.90491 1.43790 1.33317 1.80767 1.41786 1.42318 1.30434 1.04028 1.19677 1.25216 1.12971 0.85506 0.87769 1.25318 0.97210 0.96971 0.98280 1.69612 1.37522 1.28085 1.18377 0.85875 0.79615 0.79583 0.78890 1.19807 1.20900 1.19817 0.91761 0.92583 0.92453 0.92573 0.92399 0.91646 0.91887 0.91805 0.91702 0.91566 0.90580 0.90861 0.83697 0.91195 0.91616 0.76174 0.75598 0.90137 0.90128 0.77023 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.15 37.16 0.30 -0.64 16 2 C -0.09 -0.60 0.54 -154.43 -0.08 -0.68 16 3 C -0.15 -0.99 7.51 37.16 0.28 -0.71 16 4 C -0.11 -0.62 4.79 -26.61 -0.13 -0.75 16 5 C -0.16 -0.89 5.73 -26.64 -0.15 -1.04 16 6 C 0.06 0.36 6.55 -3.83 -0.03 0.34 16 7 N -0.68 -5.12 5.88 -106.76 -0.63 -5.75 16 8 C 0.09 0.66 1.86 -67.72 -0.13 0.53 16 9 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 10 C 0.15 1.52 4.61 -4.04 -0.02 1.50 16 11 N -0.74 -9.31 5.39 -65.23 -0.35 -9.66 16 12 C 0.70 11.86 8.57 -86.92 -0.74 11.12 16 13 O -0.60 -12.14 16.34 5.29 0.09 -12.06 16 14 N -0.72 -12.71 5.53 -66.41 -0.37 -13.08 16 15 C 0.13 2.49 6.15 -5.19 -0.03 2.46 16 16 C 0.43 10.08 7.85 -10.99 -0.09 9.99 16 17 O -0.60 -15.55 15.24 5.55 0.08 -15.46 16 18 N -0.55 -13.90 5.29 -10.96 -0.06 -13.95 16 19 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 22 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 23 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.35 5.12 -51.93 -0.27 0.09 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.49 6.31 -51.93 -0.33 0.16 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.37 6.58 -51.93 -0.34 0.03 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.34 2.64 7.08 -39.29 -0.28 2.36 16 40 H 0.07 0.78 6.72 -51.93 -0.35 0.43 16 41 H 0.07 0.74 6.16 -51.93 -0.32 0.42 16 42 H 0.40 4.56 8.15 -40.82 -0.33 4.23 16 43 H 0.41 7.00 7.45 -40.82 -0.30 6.69 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.40 9.62 7.90 -40.82 -0.32 9.29 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -31.38 368.15 -8.38 -39.76 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -7.34 Total: 18.21 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: -1.06 Total: 14.17 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -0.68 Total: -65.91 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: 0.17 Total: -27.52 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.38 -8.38 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418175362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.909 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds