Wall clock time and date at job start Fri Apr 10 2020 18:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.53557 * 2 1 4 4 C 1.53117 * 109.49926 * 239.90224 * 2 1 3 5 5 C 1.53126 * 109.16153 * 182.40111 * 4 2 1 6 6 C 1.53044 * 109.27419 * 57.65494 * 5 4 2 7 7 N 1.46846 * 109.52329 * 300.82222 * 6 5 4 8 8 C 1.46850 * 111.19560 * 61.74375 * 7 6 5 9 9 H 1.08997 * 109.46857 * 58.26671 * 8 7 6 10 10 C 1.53006 * 109.45638 * 178.23968 * 8 7 6 11 11 N 1.46494 * 109.47522 * 304.99657 * 10 8 7 12 12 C 1.34778 * 120.00180 * 180.02562 * 11 10 8 13 13 O 1.21589 * 119.99662 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99867 * 180.02562 * 12 11 10 15 15 C 1.46509 * 119.99923 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.47002 * 179.97438 * 15 14 12 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47459 * 59.99812 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47211 * 300.00250 * 23 21 19 27 27 H 1.09007 * 109.47106 * 299.90029 * 1 2 3 28 28 H 1.08995 * 109.47633 * 59.89714 * 1 2 3 29 29 H 1.08995 * 109.47371 * 179.90147 * 1 2 3 30 30 H 1.09004 * 109.46719 * 180.10150 * 3 2 1 31 31 H 1.09002 * 109.46998 * 300.09573 * 3 2 1 32 32 H 1.08999 * 109.47015 * 60.10407 * 3 2 1 33 33 H 1.09003 * 109.52347 * 62.50026 * 4 2 1 34 34 H 1.08996 * 109.57904 * 302.34211 * 4 2 1 35 35 H 1.08993 * 109.50142 * 297.71832 * 5 4 2 36 36 H 1.09000 * 109.53701 * 177.61499 * 5 4 2 37 37 H 1.08997 * 109.46058 * 180.80585 * 6 5 4 38 38 H 1.09004 * 109.44983 * 60.82866 * 6 5 4 39 39 H 1.00900 * 110.99951 * 297.64192 * 7 6 5 40 40 H 1.09003 * 109.46790 * 184.99643 * 10 8 7 41 41 H 1.09001 * 109.46992 * 65.00457 * 10 8 7 42 42 H 0.97003 * 119.99886 * 0.02562 * 11 10 8 43 43 H 0.97003 * 120.00202 * 359.97438 * 14 12 11 44 44 H 1.09003 * 109.46564 * 59.99951 * 15 14 12 45 45 H 1.08993 * 109.46901 * 300.00286 * 15 14 12 46 46 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 47 47 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4420 0.0000 4 6 2.0411 -0.7238 -1.2487 5 6 3.5711 -0.7719 -1.2109 6 6 4.0229 -1.4730 0.0723 7 7 3.5093 -0.7421 1.2378 8 6 2.0409 -0.7235 1.2479 9 1 1.6647 -1.7465 1.2542 10 6 1.5492 0.0080 2.4986 11 7 2.1338 -0.6133 3.6894 12 6 1.8397 -0.1325 4.9137 13 8 1.0895 0.8173 5.0297 14 7 2.3780 -0.7038 6.0092 15 6 2.0588 -0.1808 7.3400 16 6 2.7828 -0.9903 8.3848 17 8 3.4958 -1.9129 8.0507 18 7 2.6389 -0.6882 9.6904 19 6 3.2932 -1.4281 10.6413 20 1 3.9274 -2.2502 10.3438 21 6 3.1404 -1.1204 11.9876 22 7 2.3683 -0.1205 12.3495 23 14 4.0324 -2.1280 13.2831 24 1 5.4975 -2.0375 13.0585 25 1 3.7044 -1.6014 14.6323 26 1 3.6039 -3.5468 13.1884 27 1 -0.3634 0.5123 0.8909 28 1 -0.3634 0.5154 -0.8890 29 1 -0.3634 -1.0276 -0.0018 30 1 3.1317 1.4407 -0.0018 31 1 1.6774 1.9567 -0.8891 32 1 1.6804 1.9556 0.8909 33 1 1.7155 -0.1870 -2.1398 34 1 1.6451 -1.7391 -1.2702 35 1 3.9676 0.2431 -1.2299 36 1 3.9400 -1.3230 -2.0760 37 1 5.1120 -1.4962 0.1092 38 1 3.6372 -2.4925 0.0840 39 1 3.8831 0.1945 1.2707 40 1 0.4623 -0.0548 2.5524 41 1 1.8506 1.0544 2.4495 42 1 2.7326 -1.3708 3.5968 43 1 2.9768 -1.4614 5.9166 44 1 0.9840 -0.2486 7.5087 45 1 2.3719 0.8611 7.4056 46 1 2.0691 0.0499 9.9576 47 1 2.2619 0.0946 13.2894 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418175362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:50 Heat of formation + Delta-G solvation = -106.254995 kcal Electronic energy + Delta-G solvation = -26116.310126 eV Core-core repulsion = 22332.108294 eV Total energy + Delta-G solvation = -3784.201832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43831 -40.75150 -39.88974 -36.26312 -35.81428 -35.20510 -34.75961 -33.35851 -32.53112 -29.52253 -28.37244 -27.92190 -26.74158 -26.04228 -23.39286 -22.22003 -21.85138 -21.32726 -20.12903 -19.86423 -19.18650 -17.62712 -17.37825 -16.98396 -16.53312 -16.35006 -16.26907 -16.06397 -15.80552 -15.58739 -15.36528 -15.10684 -14.95424 -14.31081 -14.16095 -13.91401 -13.73358 -13.56731 -13.51906 -13.04063 -12.92006 -12.87426 -12.63488 -12.54005 -12.45212 -12.36582 -12.16410 -12.12390 -11.87281 -11.54381 -11.37084 -11.24919 -11.05755 -10.53102 -10.35000 -10.08135 -9.69947 -9.23224 -8.48993 -5.99240 1.39654 1.43551 1.54316 1.69387 1.92352 2.19105 2.30554 3.06884 3.18098 3.23914 3.42672 3.66780 3.77729 3.83246 4.10112 4.24044 4.26502 4.26941 4.35864 4.43504 4.46638 4.49510 4.60971 4.74241 4.76052 4.82768 4.87276 4.93836 4.99538 5.08819 5.11748 5.15261 5.25870 5.30708 5.36078 5.37761 5.41110 5.49885 5.60830 5.93855 6.04836 6.10500 6.45093 6.50445 7.05282 7.12233 7.45460 7.61208 7.96863 8.67759 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.033273 B = 0.002144 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.327002 B =13054.107933 C =13612.905271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.148 4.148 4 C -0.104 4.104 5 C -0.155 4.155 6 C 0.058 3.942 7 N -0.687 5.687 8 C 0.097 3.903 9 H 0.088 0.912 10 C 0.145 3.855 11 N -0.721 5.721 12 C 0.702 3.298 13 O -0.637 6.637 14 N -0.725 5.725 15 C 0.142 3.858 16 C 0.434 3.566 17 O -0.623 6.623 18 N -0.560 5.560 19 C -0.337 4.337 20 H 0.086 0.914 21 C -0.012 4.012 22 N -0.917 5.917 23 Si 0.998 3.002 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.270 1.270 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.343 0.657 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.412 0.588 43 H 0.409 0.591 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.399 0.601 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.875 0.418 -28.000 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 C -0.206 4.206 4 C -0.141 4.141 5 C -0.195 4.195 6 C -0.071 4.071 7 N -0.316 5.316 8 C -0.014 4.014 9 H 0.106 0.894 10 C 0.021 3.979 11 N -0.377 5.377 12 C 0.401 3.599 13 O -0.519 6.519 14 N -0.383 5.383 15 C 0.014 3.986 16 C 0.221 3.779 17 O -0.511 6.511 18 N -0.196 5.196 19 C -0.466 4.466 20 H 0.104 0.896 21 C -0.212 4.212 22 N -0.557 5.557 23 Si 0.821 3.179 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.195 1.195 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.162 0.838 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.248 0.752 43 H 0.247 0.753 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.233 0.767 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.070 0.201 -27.475 27.496 hybrid contribution 0.283 0.122 0.220 0.379 sum -0.787 0.323 -27.254 27.268 Atomic orbital electron populations 1.21904 0.93882 1.02239 1.02169 1.21110 0.96407 0.95922 0.95522 1.22008 1.01151 0.95178 1.02226 1.21586 0.95476 1.00416 0.96632 1.22261 0.96046 1.01559 0.99585 1.22037 1.00193 0.97735 0.87127 1.60637 1.06144 1.22363 1.42490 1.21716 0.88457 0.99486 0.91754 0.89419 1.21416 0.97484 0.96741 0.82305 1.44819 1.52331 1.37414 1.03112 1.15995 0.80488 0.82161 0.81209 1.90867 1.42787 1.31624 1.86625 1.44680 1.52283 1.37422 1.03871 1.20563 0.99955 0.97361 0.80745 1.20425 0.86159 0.87277 0.84004 1.90467 1.44856 1.34553 1.81260 1.41836 1.42634 1.30603 1.04490 1.19704 1.26513 1.13657 0.86762 0.89566 1.26144 0.97589 0.97833 0.99680 1.69680 1.38004 1.28847 1.19132 0.84919 0.78403 0.78089 0.76511 1.19469 1.19649 1.19482 0.92859 0.91849 0.92173 0.92246 0.91757 0.92871 0.91325 0.91696 0.91726 0.90686 0.90200 0.90948 0.83769 0.91753 0.92196 0.75170 0.75328 0.89175 0.89189 0.76703 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.15 71.98 0.59 -1.13 16 2 C -0.09 -1.01 0.54 -52.13 -0.03 -1.03 16 3 C -0.15 -1.78 7.51 71.98 0.54 -1.23 16 4 C -0.10 -0.99 4.79 30.68 0.15 -0.85 16 5 C -0.16 -1.39 5.73 30.65 0.18 -1.22 16 6 C 0.06 0.63 6.55 86.33 0.57 1.20 16 7 N -0.69 -9.45 5.88 -491.67 -2.89 -12.34 16 8 C 0.10 1.37 1.86 44.94 0.08 1.46 16 9 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 10 C 0.14 2.94 4.61 86.38 0.40 3.34 16 11 N -0.72 -17.62 5.39 -478.53 -2.58 -20.20 16 12 C 0.70 23.28 8.57 179.06 1.53 24.81 16 13 O -0.64 -25.36 16.34 -4.00 -0.07 -25.43 16 14 N -0.72 -25.02 5.53 -482.29 -2.67 -27.69 16 15 C 0.14 5.43 6.15 85.63 0.53 5.96 16 16 C 0.43 20.47 7.85 87.66 0.69 21.15 16 17 O -0.62 -32.70 15.24 -3.07 -0.05 -32.75 16 18 N -0.56 -28.58 5.29 -306.98 -1.62 -30.20 16 19 C -0.34 -18.76 9.68 84.04 0.81 -17.95 16 20 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 21 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 22 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 23 Si 1.00 42.08 29.55 68.60 2.03 44.11 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H 0.05 0.75 6.57 -2.38 -0.02 0.74 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.67 5.12 -2.38 -0.01 0.66 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.77 6.31 -2.39 -0.02 0.76 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.61 6.58 -2.39 -0.02 0.59 16 36 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.34 4.85 7.08 -89.69 -0.64 4.21 16 40 H 0.06 1.41 6.72 -2.39 -0.02 1.39 16 41 H 0.06 1.32 6.16 -2.39 -0.01 1.31 16 42 H 0.41 8.85 8.15 -92.71 -0.76 8.09 16 43 H 0.41 13.87 7.45 -92.71 -0.69 13.18 16 44 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 46 H 0.40 19.58 7.90 -92.71 -0.73 18.85 16 47 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -66.09 368.15 -2.85 -68.94 By element: Atomic # 1 Polarization: 51.91 SS G_CDS: -1.79 Total: 50.13 kcal Atomic # 6 Polarization: 27.84 SS G_CDS: 6.50 Total: 34.34 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -9.48 Total: -139.34 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: -0.11 Total: -58.18 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -66.09 -2.85 -68.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418175362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.315 kcal (2) G-P(sol) polarization free energy of solvation -66.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds