Wall clock time and date at job start Fri Apr 10 2020 18:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 109.46839 * 2 1 4 4 C 1.34779 * 120.00022 * 179.97438 * 3 2 1 5 5 O 1.21586 * 119.99687 * 5.06729 * 4 3 2 6 6 N 1.34771 * 119.99869 * 185.06080 * 4 3 2 7 7 C 1.46967 * 120.59216 * 174.93643 * 6 4 3 8 8 C 1.53368 * 108.63434 * 235.20791 * 7 6 4 9 9 N 1.46965 * 108.63504 * 310.57154 * 8 7 6 10 10 C 1.34771 * 120.59742 * 235.20365 * 9 8 7 11 11 O 1.21284 * 119.99872 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.00206 * 180.02562 * 10 9 8 13 13 H 1.09001 * 109.46678 * 40.00119 * 12 10 9 14 14 N 1.46900 * 109.47168 * 159.99948 * 12 10 9 15 15 C 1.52998 * 109.47361 * 280.00471 * 12 10 9 16 16 C 1.53000 * 109.47349 * 174.99687 * 15 12 10 17 17 C 1.50697 * 109.47120 * 179.97438 * 16 15 12 18 18 H 1.07998 * 119.99863 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99728 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00342 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99830 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47111 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47271 * 120.00096 * 21 19 17 24 24 H 1.48501 * 109.47356 * 240.00037 * 21 19 17 25 25 C 1.46968 * 118.81019 * 55.48324 * 9 8 7 26 26 C 1.46967 * 120.59369 * 354.91637 * 6 4 3 27 27 H 1.08998 * 109.46628 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47886 * 300.00446 * 1 2 3 29 29 H 1.09007 * 109.46735 * 60.00827 * 1 2 3 30 30 H 1.08988 * 109.47502 * 239.99583 * 2 1 3 31 31 H 1.08997 * 109.46757 * 119.99346 * 2 1 3 32 32 H 0.97002 * 119.99680 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.60689 * 115.46079 * 7 6 4 34 34 H 1.08997 * 109.60835 * 354.95468 * 7 6 4 35 35 H 1.09002 * 109.60997 * 190.83230 * 8 7 6 36 36 H 1.08993 * 109.61300 * 70.32058 * 8 7 6 37 37 H 1.00901 * 110.99910 * 296.05034 * 14 12 10 38 38 H 1.00899 * 110.99545 * 60.00382 * 14 12 10 39 39 H 1.09005 * 109.47120 * 54.99486 * 15 12 10 40 40 H 1.09000 * 109.46655 * 295.00191 * 15 12 10 41 41 H 1.09005 * 109.46716 * 60.00107 * 16 15 12 42 42 H 1.08996 * 109.47104 * 300.00351 * 16 15 12 43 43 H 0.96997 * 120.00162 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.60805 * 64.26384 * 25 9 8 45 45 H 1.08994 * 109.61049 * 184.77465 * 25 9 8 46 46 H 1.08997 * 109.61073 * 244.53482 * 26 6 4 47 47 H 1.08994 * 109.61361 * 5.05448 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6277 0.0005 5 8 4.1328 0.7075 -0.0920 6 7 3.7933 2.8939 0.1035 7 6 5.2325 3.1693 0.2168 8 6 5.4733 4.0064 1.4792 9 7 4.5337 5.1364 1.4797 10 6 4.9836 6.4026 1.5827 11 8 6.1736 6.6176 1.6757 12 6 4.0082 7.5514 1.5824 13 1 3.1307 7.2830 2.1708 14 7 4.6474 8.7367 2.1692 15 6 3.5837 7.8597 0.1452 16 6 2.5011 8.9407 0.1539 17 6 2.0835 9.2448 -1.2618 18 1 2.5439 8.7192 -2.0853 19 6 1.1129 10.1932 -1.5056 20 7 0.5519 10.8329 -0.5027 21 14 0.5947 10.5696 -3.2604 22 1 1.3708 9.7198 -4.1987 23 1 -0.8543 10.2868 -3.4201 24 1 0.8553 12.0011 -3.5572 25 6 3.0941 4.8606 1.3720 26 6 2.8536 4.0239 0.1040 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5138 -0.8898 31 1 1.8933 -0.5137 0.8900 32 1 1.3879 2.1185 -0.0004 33 1 5.5689 3.7236 -0.6594 34 1 5.7800 2.2298 0.2909 35 1 6.4967 4.3816 1.4797 36 1 5.3062 3.3913 2.3634 37 1 4.8789 8.5800 3.1388 38 1 5.4641 9.0057 1.6413 39 1 3.1905 6.9554 -0.3194 40 1 4.4459 8.2132 -0.4203 41 1 2.8943 9.8450 0.6185 42 1 1.6390 8.5871 0.7194 43 1 -0.1307 11.5004 -0.6742 44 1 2.7616 4.3049 2.2488 45 1 2.5460 5.8001 1.3017 46 1 3.0207 4.6390 -0.7802 47 1 1.8303 3.6487 0.1036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424062406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:06 Heat of formation + Delta-G solvation = -58.444077 kcal Electronic energy + Delta-G solvation = -27025.467479 eV Core-core repulsion = 23243.338884 eV Total energy + Delta-G solvation = -3782.128595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.86981 -39.82729 -37.33467 -35.60134 -35.38080 -34.15052 -32.88125 -31.85711 -30.44944 -30.16063 -28.04949 -26.37107 -24.44376 -23.74685 -23.28283 -22.14982 -20.61983 -20.20718 -19.24999 -18.11004 -16.94698 -16.74809 -16.44682 -16.06268 -15.97025 -15.51374 -15.23524 -14.93135 -14.81102 -14.49489 -14.40562 -14.10323 -13.66411 -13.52270 -13.10964 -12.85910 -12.63187 -12.38301 -12.21627 -12.08458 -11.82844 -11.78420 -11.72319 -11.55346 -11.52781 -10.96114 -10.72989 -10.57401 -10.32656 -10.14391 -9.87340 -9.52399 -9.43781 -9.22613 -9.04897 -8.46025 -8.40205 -8.25930 -5.99712 -4.02146 2.29663 2.64021 2.96772 2.99221 3.29361 3.37843 3.40992 3.56550 4.41693 4.46996 4.55086 4.62148 4.75844 4.78133 4.84616 4.91552 4.98166 5.01405 5.10547 5.25719 5.35211 5.36973 5.46870 5.47253 5.54504 5.56085 5.59692 5.69211 5.72429 5.75793 6.15406 6.22399 6.29424 6.35692 6.57527 6.64685 6.99081 7.23517 7.43490 7.65958 7.68955 7.73432 7.89072 8.06507 8.17091 8.34492 8.41812 9.06098 9.61656 11.11047 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.003770 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.087158 B = 7425.308069 C = 9297.841267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.133 3.867 3 N -0.749 5.749 4 C 0.709 3.291 5 O -0.592 6.592 6 N -0.628 5.628 7 C 0.117 3.883 8 C 0.095 3.905 9 N -0.612 5.612 10 C 0.486 3.514 11 O -0.551 6.551 12 C 0.077 3.923 13 H 0.098 0.902 14 N -0.807 5.807 15 C -0.096 4.096 16 C 0.032 3.968 17 C -0.522 4.522 18 H 0.052 0.948 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.887 3.113 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.089 3.911 26 C 0.096 3.904 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.397 0.603 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.334 0.666 38 H 0.348 0.652 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.035 0.965 42 H 0.013 0.987 43 H 0.259 0.741 44 H 0.073 0.927 45 H 0.112 0.888 46 H 0.085 0.915 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.188 -18.870 4.923 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.009 3.991 3 N -0.407 5.407 4 C 0.410 3.590 5 O -0.471 6.471 6 N -0.366 5.366 7 C -0.007 4.007 8 C -0.028 4.028 9 N -0.347 5.347 10 C 0.274 3.726 11 O -0.428 6.428 12 C -0.039 4.039 13 H 0.116 0.884 14 N -0.334 5.334 15 C -0.134 4.134 16 C -0.005 4.005 17 C -0.561 4.561 18 H 0.070 0.930 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.715 3.285 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.035 4.035 26 C -0.028 4.028 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.086 0.914 37 H 0.146 0.854 38 H 0.162 0.838 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.031 0.969 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.130 0.870 46 H 0.104 0.896 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.582 -18.917 4.794 19.579 hybrid contribution 0.022 -0.059 -0.832 0.834 sum 1.603 -18.976 3.962 19.452 Atomic orbital electron populations 1.22022 0.94345 1.03271 1.02742 1.21151 0.93926 0.81806 1.02256 1.45386 1.05482 1.09264 1.80607 1.15810 0.82700 0.82808 0.77637 1.90907 1.55047 1.43100 1.58024 1.47219 1.07601 1.04219 1.77540 1.21875 0.80017 1.00923 0.97843 1.21986 0.95665 0.87599 0.97598 1.48167 1.06993 1.06017 1.73490 1.22827 0.90996 0.84589 0.74195 1.90642 1.17479 1.84324 1.50387 1.21887 0.95063 0.86014 1.00905 0.88415 1.59013 1.35194 1.32872 1.06359 1.21704 1.01089 1.01033 0.89596 1.19017 0.91522 0.93438 0.96558 1.21290 1.20736 1.21226 0.92821 0.92952 1.24978 0.96468 0.96100 0.96674 1.69979 1.27080 1.25709 1.30302 0.86619 0.78275 0.78227 0.85342 1.19868 1.21106 1.21037 1.22334 0.81667 1.01879 0.97590 1.22178 0.93044 0.88260 0.99367 0.90685 0.91871 0.91822 0.91622 0.91782 0.76602 0.90994 0.87840 0.87913 0.91352 0.85413 0.83767 0.92847 0.92763 0.94644 0.96898 0.93118 0.90866 0.86986 0.89635 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.03 37.16 0.37 -0.47 16 2 C 0.13 1.04 6.40 -4.04 -0.03 1.01 16 3 N -0.75 -6.75 5.47 -65.23 -0.36 -7.11 16 4 C 0.71 8.68 8.29 -86.92 -0.72 7.96 16 5 O -0.59 -9.39 15.78 5.29 0.08 -9.31 16 6 N -0.63 -6.86 2.95 -177.94 -0.52 -7.38 16 7 C 0.12 1.30 6.58 -3.60 -0.02 1.28 16 8 C 0.10 1.07 6.59 -3.60 -0.02 1.05 16 9 N -0.61 -7.48 2.94 -172.21 -0.51 -7.99 16 10 C 0.49 7.32 6.94 -10.99 -0.08 7.24 16 11 O -0.55 -9.78 15.66 5.55 0.09 -9.69 16 12 C 0.08 1.21 2.29 -68.86 -0.16 1.05 16 13 H 0.10 1.42 6.75 -51.93 -0.35 1.07 16 14 N -0.81 -13.00 8.44 -5.65 -0.05 -13.05 16 15 C -0.10 -1.79 4.46 -26.73 -0.12 -1.91 16 16 C 0.03 0.76 4.86 -27.88 -0.14 0.63 16 17 C -0.52 -14.05 9.11 -34.44 -0.31 -14.37 16 18 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 21 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.09 0.89 5.93 -3.36 -0.02 0.87 16 26 C 0.10 0.89 6.61 -3.36 -0.02 0.87 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.58 8.14 -51.94 -0.42 0.15 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.40 2.73 5.92 -40.82 -0.24 2.48 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.18 7.02 -51.93 -0.36 0.82 16 35 H 0.10 1.25 6.99 -51.93 -0.36 0.89 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.33 4.69 9.06 -39.29 -0.36 4.33 16 38 H 0.35 5.74 8.58 -39.29 -0.34 5.41 16 39 H 0.05 0.91 6.89 -51.93 -0.36 0.55 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.94 7.75 -51.93 -0.40 0.54 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.11 1.17 4.87 -51.93 -0.25 0.92 16 46 H 0.09 0.89 8.02 -51.93 -0.42 0.48 16 47 H 0.09 0.60 5.55 -51.93 -0.29 0.31 16 LS Contribution 373.81 15.07 5.63 5.63 Total: -1.00 -34.19 373.81 -8.78 -42.97 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.50 Total: 8.39 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.36 Total: 6.74 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.70 Total: -60.73 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.17 Total: -18.99 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.19 -8.78 -42.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424062406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.475 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds