Wall clock time and date at job start Fri Apr 10 2020 18:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 109.46839 * 2 1 4 4 C 1.34779 * 120.00022 * 179.97438 * 3 2 1 5 5 O 1.21586 * 119.99687 * 5.06729 * 4 3 2 6 6 N 1.34771 * 119.99869 * 185.06080 * 4 3 2 7 7 C 1.46967 * 120.59216 * 174.93643 * 6 4 3 8 8 C 1.53368 * 108.63434 * 235.20791 * 7 6 4 9 9 N 1.46965 * 108.63504 * 310.57154 * 8 7 6 10 10 C 1.34771 * 120.59742 * 235.20365 * 9 8 7 11 11 O 1.21284 * 119.99872 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.00206 * 180.02562 * 10 9 8 13 13 H 1.09001 * 109.46678 * 40.00119 * 12 10 9 14 14 N 1.46900 * 109.47168 * 159.99948 * 12 10 9 15 15 C 1.52998 * 109.47361 * 280.00471 * 12 10 9 16 16 C 1.53000 * 109.47349 * 174.99687 * 15 12 10 17 17 C 1.50697 * 109.47120 * 179.97438 * 16 15 12 18 18 H 1.07998 * 119.99863 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99728 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00342 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99830 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47111 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47271 * 120.00096 * 21 19 17 24 24 H 1.48501 * 109.47356 * 240.00037 * 21 19 17 25 25 C 1.46968 * 118.81019 * 55.48324 * 9 8 7 26 26 C 1.46967 * 120.59369 * 354.91637 * 6 4 3 27 27 H 1.08998 * 109.46628 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47886 * 300.00446 * 1 2 3 29 29 H 1.09007 * 109.46735 * 60.00827 * 1 2 3 30 30 H 1.08988 * 109.47502 * 239.99583 * 2 1 3 31 31 H 1.08997 * 109.46757 * 119.99346 * 2 1 3 32 32 H 0.97002 * 119.99680 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.60689 * 115.46079 * 7 6 4 34 34 H 1.08997 * 109.60835 * 354.95468 * 7 6 4 35 35 H 1.09002 * 109.60997 * 190.83230 * 8 7 6 36 36 H 1.08993 * 109.61300 * 70.32058 * 8 7 6 37 37 H 1.00901 * 110.99910 * 296.05034 * 14 12 10 38 38 H 1.00899 * 110.99545 * 60.00382 * 14 12 10 39 39 H 1.09005 * 109.47120 * 54.99486 * 15 12 10 40 40 H 1.09000 * 109.46655 * 295.00191 * 15 12 10 41 41 H 1.09005 * 109.46716 * 60.00107 * 16 15 12 42 42 H 1.08996 * 109.47104 * 300.00351 * 16 15 12 43 43 H 0.96997 * 120.00162 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.60805 * 64.26384 * 25 9 8 45 45 H 1.08994 * 109.61049 * 184.77465 * 25 9 8 46 46 H 1.08997 * 109.61073 * 244.53482 * 26 6 4 47 47 H 1.08994 * 109.61361 * 5.05448 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6277 0.0005 5 8 4.1328 0.7075 -0.0920 6 7 3.7933 2.8939 0.1035 7 6 5.2325 3.1693 0.2168 8 6 5.4733 4.0064 1.4792 9 7 4.5337 5.1364 1.4797 10 6 4.9836 6.4026 1.5827 11 8 6.1736 6.6176 1.6757 12 6 4.0082 7.5514 1.5824 13 1 3.1307 7.2830 2.1708 14 7 4.6474 8.7367 2.1692 15 6 3.5837 7.8597 0.1452 16 6 2.5011 8.9407 0.1539 17 6 2.0835 9.2448 -1.2618 18 1 2.5439 8.7192 -2.0853 19 6 1.1129 10.1932 -1.5056 20 7 0.5519 10.8329 -0.5027 21 14 0.5947 10.5696 -3.2604 22 1 1.3708 9.7198 -4.1987 23 1 -0.8543 10.2868 -3.4201 24 1 0.8553 12.0011 -3.5572 25 6 3.0941 4.8606 1.3720 26 6 2.8536 4.0239 0.1040 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5138 -0.8898 31 1 1.8933 -0.5137 0.8900 32 1 1.3879 2.1185 -0.0004 33 1 5.5689 3.7236 -0.6594 34 1 5.7800 2.2298 0.2909 35 1 6.4967 4.3816 1.4797 36 1 5.3062 3.3913 2.3634 37 1 4.8789 8.5800 3.1388 38 1 5.4641 9.0057 1.6413 39 1 3.1905 6.9554 -0.3194 40 1 4.4459 8.2132 -0.4203 41 1 2.8943 9.8450 0.6185 42 1 1.6390 8.5871 0.7194 43 1 -0.1307 11.5004 -0.6742 44 1 2.7616 4.3049 2.2488 45 1 2.5460 5.8001 1.3017 46 1 3.0207 4.6390 -0.7802 47 1 1.8303 3.6487 0.1036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424062406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:06 Heat of formation + Delta-G solvation = -84.036195 kcal Electronic energy + Delta-G solvation = -27026.577236 eV Core-core repulsion = 23243.338884 eV Total energy + Delta-G solvation = -3783.238352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.85654 -40.90872 -38.33755 -36.89281 -36.37664 -35.16299 -34.79571 -32.71447 -31.89808 -31.13095 -29.08894 -27.89184 -25.73664 -24.81264 -24.13873 -23.14950 -22.10880 -21.28897 -20.20468 -19.21410 -18.34154 -18.00050 -17.62018 -17.19760 -16.92157 -16.79002 -16.42334 -16.26629 -15.71805 -15.57480 -15.40322 -15.18240 -14.90461 -14.63438 -14.23708 -14.12320 -13.79379 -13.64037 -13.34433 -13.21790 -12.83473 -12.81134 -12.65525 -12.53126 -12.45903 -12.42723 -12.34733 -12.17278 -11.70987 -11.61066 -11.32932 -11.18580 -10.95396 -10.49349 -10.45511 -10.07228 -9.61991 -9.36496 -8.10393 -6.19576 1.42214 1.43262 1.44750 1.46547 1.56673 1.97843 2.04709 2.47151 2.81892 3.23485 3.38784 3.65405 3.70597 3.85016 4.00492 4.05405 4.12189 4.18280 4.22920 4.27593 4.33658 4.40539 4.54302 4.58735 4.61536 4.69504 4.80578 4.90355 4.94189 4.97636 5.09690 5.25061 5.28040 5.33095 5.37591 5.50602 5.62313 5.82492 5.89360 6.03240 6.08171 6.26838 6.34592 6.51330 6.85837 6.99489 7.00981 7.45631 7.48665 9.00719 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.003770 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.087158 B = 7425.308069 C = 9297.841267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.130 3.870 3 N -0.736 5.736 4 C 0.704 3.296 5 O -0.633 6.633 6 N -0.626 5.626 7 C 0.122 3.878 8 C 0.102 3.898 9 N -0.605 5.605 10 C 0.490 3.510 11 O -0.581 6.581 12 C 0.085 3.915 13 H 0.114 0.886 14 N -0.819 5.819 15 C -0.081 4.081 16 C 0.041 3.959 17 C -0.538 4.538 18 H 0.055 0.945 19 C 0.006 3.994 20 N -0.928 5.928 21 Si 0.953 3.047 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.285 1.285 25 C 0.087 3.913 26 C 0.096 3.904 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.409 0.591 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.346 0.654 38 H 0.344 0.656 39 H 0.072 0.928 40 H 0.038 0.962 41 H 0.003 0.997 42 H 0.001 0.999 43 H 0.261 0.739 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.076 0.924 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 -20.010 4.571 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.006 3.994 3 N -0.395 5.395 4 C 0.405 3.595 5 O -0.515 6.515 6 N -0.363 5.363 7 C -0.002 4.002 8 C -0.022 4.022 9 N -0.338 5.338 10 C 0.277 3.723 11 O -0.461 6.461 12 C -0.031 4.031 13 H 0.132 0.868 14 N -0.348 5.348 15 C -0.119 4.119 16 C 0.004 3.996 17 C -0.576 4.576 18 H 0.073 0.927 19 C -0.192 4.192 20 N -0.569 5.569 21 Si 0.779 3.221 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.212 1.212 25 C -0.036 4.036 26 C -0.027 4.027 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.248 0.752 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.021 0.979 42 H 0.019 0.981 43 H 0.070 0.930 44 H 0.115 0.885 45 H 0.128 0.872 46 H 0.095 0.905 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.188 -20.074 4.445 20.561 hybrid contribution 0.423 0.266 -0.703 0.862 sum 0.611 -19.807 3.742 20.167 Atomic orbital electron populations 1.21971 0.91879 1.04277 1.03297 1.21252 0.95824 0.80973 1.01349 1.45353 1.04518 1.10267 1.79375 1.16015 0.83375 0.82595 0.77497 1.90879 1.56315 1.44374 1.59903 1.47222 1.07662 1.04322 1.77098 1.21768 0.80446 1.00507 0.97505 1.21977 0.94948 0.87118 0.98151 1.48188 1.08323 1.05332 1.71988 1.22510 0.90181 0.85256 0.74309 1.90635 1.18503 1.84892 1.52039 1.21705 0.95861 0.86363 0.99130 0.86827 1.59008 1.35151 1.33383 1.07221 1.21424 0.98731 0.99959 0.91765 1.18816 0.92369 0.93679 0.94752 1.21729 1.20548 1.21117 0.94215 0.92685 1.25806 0.96664 0.96062 1.00696 1.70098 1.27812 1.26443 1.32509 0.85580 0.78182 0.77816 0.80519 1.18924 1.20265 1.21151 1.22529 0.79998 1.02207 0.98914 1.22285 0.94253 0.87600 0.98603 0.89518 0.91034 0.91434 0.92882 0.92453 0.75188 0.91533 0.88277 0.88908 0.90068 0.84079 0.84200 0.90957 0.94342 0.97887 0.98093 0.93024 0.88541 0.87216 0.90528 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 10.03 71.98 0.72 -0.47 16 2 C 0.13 1.84 6.40 86.38 0.55 2.39 16 3 N -0.74 -11.75 5.47 -478.54 -2.62 -14.37 16 4 C 0.70 16.25 8.29 179.06 1.49 17.74 16 5 O -0.63 -19.82 15.78 -3.99 -0.06 -19.89 16 6 N -0.63 -12.59 2.95 -835.15 -2.46 -15.05 16 7 C 0.12 2.59 6.58 86.41 0.57 3.16 16 8 C 0.10 2.15 6.59 86.41 0.57 2.72 16 9 N -0.61 -13.71 2.94 -817.14 -2.40 -16.12 16 10 C 0.49 14.20 6.94 87.66 0.61 14.81 16 11 O -0.58 -20.33 15.66 -3.04 -0.05 -20.38 16 12 C 0.08 2.59 2.29 44.17 0.10 2.69 16 13 H 0.11 3.10 6.75 -2.39 -0.02 3.09 16 14 N -0.82 -26.26 8.44 -171.80 -1.45 -27.71 16 15 C -0.08 -2.96 4.46 30.59 0.14 -2.82 16 16 C 0.04 1.98 4.86 29.85 0.15 2.12 16 17 C -0.54 -28.80 9.11 25.60 0.23 -28.57 16 18 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 19 C 0.01 0.31 5.46 84.65 0.46 0.77 16 20 N -0.93 -54.27 13.29 21.45 0.28 -53.99 16 21 Si 0.95 42.70 29.54 68.60 2.03 44.73 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 25 C 0.09 1.48 5.93 86.57 0.51 1.99 16 26 C 0.10 1.54 6.61 86.57 0.57 2.11 16 27 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.41 4.36 5.92 -92.71 -0.55 3.81 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 2.24 7.02 -2.39 -0.02 2.22 16 35 H 0.09 2.20 6.99 -2.39 -0.02 2.19 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.35 9.53 9.06 -89.69 -0.81 8.72 16 38 H 0.34 11.48 8.58 -89.69 -0.77 10.71 16 39 H 0.07 2.36 6.89 -2.38 -0.02 2.34 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.00 0.15 7.75 -2.38 -0.02 0.13 16 42 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 44 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.11 2.00 4.87 -2.39 -0.01 1.99 16 46 H 0.08 1.42 8.02 -2.39 -0.02 1.40 16 47 H 0.12 1.17 5.55 -2.39 -0.01 1.16 16 Total: -1.00 -73.82 373.81 -1.19 -75.01 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: -1.13 Total: 29.13 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 6.67 Total: 18.64 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -8.65 Total: -127.23 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -0.11 Total: -40.27 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -73.82 -1.19 -75.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424062406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.028 kcal (2) G-P(sol) polarization free energy of solvation -73.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds