Wall clock time and date at job start Fri Apr 10 2020 18:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 117.00201 * 2 1 4 4 O 1.20824 * 119.99787 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99627 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47641 * 324.99958 * 5 3 2 7 7 C 1.34772 * 120.00318 * 59.99930 * 6 5 3 8 8 O 1.21288 * 119.99815 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00286 * 180.02562 * 7 6 5 10 10 H 1.08993 * 109.47512 * 320.00233 * 9 7 6 11 11 N 1.46898 * 109.47309 * 199.99926 * 9 7 6 12 12 C 1.53006 * 109.46866 * 80.00111 * 9 7 6 13 13 C 1.52999 * 109.46811 * 184.99981 * 12 9 7 14 14 C 1.50696 * 109.47144 * 179.97438 * 13 12 9 15 15 H 1.07998 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00308 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99744 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99943 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47401 * 60.00013 * 18 16 14 20 20 H 1.48501 * 109.46976 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46780 * 299.99551 * 18 16 14 22 22 C 1.53002 * 109.47148 * 85.00107 * 5 3 2 23 23 C 1.53000 * 109.47374 * 179.97438 * 22 5 3 24 24 C 1.52996 * 109.47163 * 300.00306 * 23 22 5 25 25 C 1.53005 * 109.47696 * 59.99380 * 24 23 22 26 26 C 1.53000 * 109.46874 * 204.99580 * 5 3 2 27 27 H 1.09002 * 109.47126 * 300.00362 * 1 2 3 28 28 H 1.09008 * 109.47304 * 59.99853 * 1 2 3 29 29 H 1.08996 * 109.47707 * 180.02562 * 1 2 3 30 30 H 0.96999 * 119.99874 * 240.00451 * 6 5 3 31 31 H 1.00908 * 111.00028 * 300.00108 * 11 9 7 32 32 H 1.00899 * 110.99915 * 63.95376 * 11 9 7 33 33 H 1.08992 * 109.47046 * 304.99824 * 12 9 7 34 34 H 1.08997 * 109.47395 * 65.00364 * 12 9 7 35 35 H 1.09009 * 109.47170 * 300.00068 * 13 12 9 36 36 H 1.09001 * 109.47273 * 59.99848 * 13 12 9 37 37 H 0.96993 * 119.99974 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.46824 * 299.99252 * 22 5 3 39 39 H 1.09001 * 109.47204 * 59.99900 * 22 5 3 40 40 H 1.08994 * 109.47503 * 179.97438 * 23 22 5 41 41 H 1.09001 * 109.47013 * 59.99587 * 23 22 5 42 42 H 1.09001 * 109.47087 * 299.99460 * 24 23 22 43 43 H 1.09003 * 109.47261 * 179.97438 * 24 23 22 44 44 H 1.08993 * 109.47367 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.46324 * 60.00078 * 25 24 23 46 46 H 1.09001 * 109.47554 * 300.00147 * 26 5 3 47 47 H 1.09007 * 109.47210 * 60.00221 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 4.1135 0.1703 0.7912 7 6 3.8541 -1.1045 0.4391 8 8 3.1672 -1.3374 -0.5330 9 6 4.4165 -2.2407 1.2539 10 1 5.4370 -2.0025 1.5537 11 7 4.4171 -3.4684 0.4473 12 6 3.5544 -2.4498 2.5005 13 6 4.1942 -3.5180 3.3897 14 6 3.3455 -3.7236 4.6178 15 1 2.4405 -3.1495 4.7511 16 6 3.7248 -4.6439 5.5719 17 7 4.8276 -5.3419 5.4103 18 14 2.6723 -4.8992 7.0939 19 1 1.3143 -5.3422 6.6880 20 1 3.2939 -5.9350 7.9575 21 1 2.5724 -3.6228 7.8463 22 6 4.0816 1.1761 -1.4378 23 6 5.6095 1.2567 -1.4385 24 6 6.0502 2.5890 -0.8290 25 6 5.5349 2.6877 0.6083 26 6 4.0075 2.6069 0.6090 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.6625 0.3565 1.5689 31 1 3.4815 -3.7107 0.1569 32 1 5.0307 -3.3780 -0.3484 33 1 3.4814 -1.5132 3.0531 34 1 2.5575 -2.7746 2.2026 35 1 4.2672 -4.4547 2.8370 36 1 5.1912 -3.1933 3.6876 37 1 5.0943 -5.9896 6.0813 38 1 3.7674 0.2271 -1.8721 39 1 3.6746 1.9979 -2.0270 40 1 5.9766 1.1860 -2.4624 41 1 6.0169 0.4352 -0.8493 42 1 5.6429 3.4106 -1.4182 43 1 7.1388 2.6462 -0.8291 44 1 5.8485 3.6370 1.0423 45 1 5.9423 1.8661 1.1974 46 1 3.6004 3.4287 0.0199 47 1 3.6404 2.6772 1.6330 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424071852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:10 Heat of formation + Delta-G solvation = -142.279458 kcal Electronic energy + Delta-G solvation = -28022.541667 eV Core-core repulsion = 24204.484946 eV Total energy + Delta-G solvation = -3818.056721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37271 -39.52207 -38.22071 -36.33025 -35.14403 -33.92345 -32.78903 -31.18402 -30.44613 -30.04586 -27.72432 -26.33215 -24.22537 -23.52318 -23.06553 -21.08268 -20.84174 -19.89229 -19.25956 -17.85764 -17.39803 -16.73773 -16.44571 -16.14818 -15.82345 -15.36976 -14.95968 -14.58895 -14.43143 -14.29215 -13.92342 -13.67956 -13.43817 -13.35349 -13.00955 -12.66215 -12.54812 -12.43532 -12.29450 -12.01855 -11.97573 -11.57806 -11.44066 -11.10837 -10.91729 -10.87657 -10.69666 -10.65998 -10.57805 -10.55857 -10.30593 -9.94275 -9.76406 -9.34434 -9.11724 -8.99702 -8.33094 -8.18085 -5.93458 -3.95470 2.06885 2.64449 2.91692 3.18414 3.35962 3.40624 3.43030 4.17841 4.37549 4.49369 4.50380 4.77697 4.78585 4.90321 4.96822 5.05253 5.14127 5.14306 5.18425 5.21374 5.34159 5.41225 5.42101 5.54869 5.55364 5.62233 5.72327 5.77155 5.81709 5.86043 5.89692 6.02104 6.09249 6.33406 6.41758 6.46096 6.68534 7.10362 7.38035 7.58569 7.73102 7.76548 7.81542 7.96969 8.13839 8.36691 8.49218 9.12403 9.67592 11.17404 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015503 B = 0.003718 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.699562 B = 7528.163430 C = 7995.927063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.314 6.314 3 C 0.459 3.541 4 O -0.517 6.517 5 C 0.194 3.806 6 N -0.722 5.722 7 C 0.484 3.516 8 O -0.517 6.517 9 C 0.081 3.919 10 H 0.096 0.904 11 N -0.806 5.806 12 C -0.093 4.093 13 C 0.032 3.968 14 C -0.522 4.522 15 H 0.051 0.949 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.128 4.128 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.113 4.113 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.406 0.594 31 H 0.348 0.652 32 H 0.333 0.667 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.035 0.965 36 H 0.012 0.988 37 H 0.260 0.740 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.132 16.196 -14.033 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.228 6.228 3 C 0.300 3.700 4 O -0.405 6.405 5 C 0.105 3.895 6 N -0.379 5.379 7 C 0.270 3.730 8 O -0.392 6.392 9 C -0.035 4.035 10 H 0.113 0.887 11 N -0.334 5.334 12 C -0.132 4.132 13 C -0.005 4.005 14 C -0.561 4.561 15 H 0.069 0.931 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.166 4.166 23 C -0.150 4.150 24 C -0.159 4.159 25 C -0.156 4.156 26 C -0.151 4.151 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.243 0.757 31 H 0.162 0.838 32 H 0.145 0.855 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.030 0.970 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.783 15.756 -14.001 21.092 hybrid contribution -1.059 0.688 0.557 1.380 sum -0.276 16.444 -13.444 21.242 Atomic orbital electron populations 1.23266 0.77647 1.03705 1.01716 1.86933 1.22121 1.31461 1.82243 1.24180 0.92006 0.81952 0.71818 1.90637 1.66915 1.36747 1.46250 1.20100 0.85333 0.89289 0.94767 1.46302 1.54845 1.04943 1.31776 1.22726 0.80016 0.84421 0.85877 1.90639 1.36693 1.84008 1.27864 1.21800 1.01219 0.85653 0.94779 0.88655 1.59002 1.15813 1.31621 1.26958 1.21626 0.97979 1.01120 0.92432 1.19011 0.95081 0.93729 0.92727 1.21241 1.08564 1.21368 1.04900 0.93120 1.24978 0.95132 0.95952 0.98178 1.69959 1.23081 1.24988 1.35163 0.86731 0.80702 0.77763 0.83194 1.20341 1.21329 1.20402 1.21936 0.96888 1.04566 0.93206 1.21449 0.94236 0.98000 1.01269 1.21587 1.00726 0.97702 0.95910 1.21552 0.93918 1.02670 0.97488 1.21725 0.96940 0.94334 1.02106 0.92331 0.92421 0.88126 0.75738 0.83790 0.85546 0.93063 0.92830 0.94693 0.96954 0.93061 0.88776 0.90932 0.91465 0.91351 0.91817 0.91534 0.90879 0.91313 0.89164 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.31 -4.86 6.72 -47.38 -0.32 -5.18 16 3 C 0.46 6.70 6.71 36.00 0.24 6.95 16 4 O -0.52 -8.24 15.84 -18.75 -0.30 -8.54 16 5 C 0.19 2.24 0.63 -132.97 -0.08 2.16 16 6 N -0.72 -8.48 4.03 -48.69 -0.20 -8.68 16 7 C 0.48 6.92 6.00 -10.99 -0.07 6.85 16 8 O -0.52 -8.36 11.50 -18.96 -0.22 -8.58 16 9 C 0.08 1.28 3.15 -68.86 -0.22 1.07 16 10 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 11 N -0.81 -12.83 8.44 -5.65 -0.05 -12.88 16 12 C -0.09 -1.83 4.78 -26.73 -0.13 -1.96 16 13 C 0.03 0.79 4.86 -27.89 -0.14 0.66 16 14 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 15 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 18 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.13 -1.37 4.50 -26.73 -0.12 -1.49 16 23 C -0.11 -0.96 5.77 -26.73 -0.15 -1.12 16 24 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 25 C -0.12 -0.86 5.75 -26.75 -0.15 -1.02 16 26 C -0.11 -1.06 4.31 -26.75 -0.12 -1.17 16 27 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 28 H 0.06 0.67 8.13 -51.92 -0.42 0.25 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.41 4.10 7.32 -40.82 -0.30 3.80 16 31 H 0.35 5.67 8.58 -39.29 -0.34 5.33 16 32 H 0.33 4.54 9.06 -39.29 -0.36 4.18 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.03 0.95 7.75 -51.92 -0.40 0.55 16 36 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.09 1.22 6.17 -51.93 -0.32 0.90 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.64 7.60 -51.93 -0.39 0.24 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.49 6.86 -51.93 -0.36 0.13 16 46 H 0.09 0.86 7.87 -51.93 -0.41 0.45 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -32.86 371.30 -8.11 -40.97 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.91 Total: 8.64 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.44 Total: -2.00 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.49 Total: -47.53 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.83 Total: -22.30 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.86 -8.11 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424071852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.306 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds