Wall clock time and date at job start Fri Apr 10 2020 18:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 117.00201 * 2 1 4 4 O 1.20824 * 119.99787 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99627 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47641 * 324.99958 * 5 3 2 7 7 C 1.34772 * 120.00318 * 59.99930 * 6 5 3 8 8 O 1.21288 * 119.99815 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00286 * 180.02562 * 7 6 5 10 10 H 1.08993 * 109.47512 * 320.00233 * 9 7 6 11 11 N 1.46898 * 109.47309 * 199.99926 * 9 7 6 12 12 C 1.53006 * 109.46866 * 80.00111 * 9 7 6 13 13 C 1.52999 * 109.46811 * 184.99981 * 12 9 7 14 14 C 1.50696 * 109.47144 * 179.97438 * 13 12 9 15 15 H 1.07998 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00308 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99744 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99943 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47401 * 60.00013 * 18 16 14 20 20 H 1.48501 * 109.46976 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46780 * 299.99551 * 18 16 14 22 22 C 1.53002 * 109.47148 * 85.00107 * 5 3 2 23 23 C 1.53000 * 109.47374 * 179.97438 * 22 5 3 24 24 C 1.52996 * 109.47163 * 300.00306 * 23 22 5 25 25 C 1.53005 * 109.47696 * 59.99380 * 24 23 22 26 26 C 1.53000 * 109.46874 * 204.99580 * 5 3 2 27 27 H 1.09002 * 109.47126 * 300.00362 * 1 2 3 28 28 H 1.09008 * 109.47304 * 59.99853 * 1 2 3 29 29 H 1.08996 * 109.47707 * 180.02562 * 1 2 3 30 30 H 0.96999 * 119.99874 * 240.00451 * 6 5 3 31 31 H 1.00908 * 111.00028 * 300.00108 * 11 9 7 32 32 H 1.00899 * 110.99915 * 63.95376 * 11 9 7 33 33 H 1.08992 * 109.47046 * 304.99824 * 12 9 7 34 34 H 1.08997 * 109.47395 * 65.00364 * 12 9 7 35 35 H 1.09009 * 109.47170 * 300.00068 * 13 12 9 36 36 H 1.09001 * 109.47273 * 59.99848 * 13 12 9 37 37 H 0.96993 * 119.99974 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.46824 * 299.99252 * 22 5 3 39 39 H 1.09001 * 109.47204 * 59.99900 * 22 5 3 40 40 H 1.08994 * 109.47503 * 179.97438 * 23 22 5 41 41 H 1.09001 * 109.47013 * 59.99587 * 23 22 5 42 42 H 1.09001 * 109.47087 * 299.99460 * 24 23 22 43 43 H 1.09003 * 109.47261 * 179.97438 * 24 23 22 44 44 H 1.08993 * 109.47367 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.46324 * 60.00078 * 25 24 23 46 46 H 1.09001 * 109.47554 * 300.00147 * 26 5 3 47 47 H 1.09007 * 109.47210 * 60.00221 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 4.1135 0.1703 0.7912 7 6 3.8541 -1.1045 0.4391 8 8 3.1672 -1.3374 -0.5330 9 6 4.4165 -2.2407 1.2539 10 1 5.4370 -2.0025 1.5537 11 7 4.4171 -3.4684 0.4473 12 6 3.5544 -2.4498 2.5005 13 6 4.1942 -3.5180 3.3897 14 6 3.3455 -3.7236 4.6178 15 1 2.4405 -3.1495 4.7511 16 6 3.7248 -4.6439 5.5719 17 7 4.8276 -5.3419 5.4103 18 14 2.6723 -4.8992 7.0939 19 1 1.3143 -5.3422 6.6880 20 1 3.2939 -5.9350 7.9575 21 1 2.5724 -3.6228 7.8463 22 6 4.0816 1.1761 -1.4378 23 6 5.6095 1.2567 -1.4385 24 6 6.0502 2.5890 -0.8290 25 6 5.5349 2.6877 0.6083 26 6 4.0075 2.6069 0.6090 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.6625 0.3565 1.5689 31 1 3.4815 -3.7107 0.1569 32 1 5.0307 -3.3780 -0.3484 33 1 3.4814 -1.5132 3.0531 34 1 2.5575 -2.7746 2.2026 35 1 4.2672 -4.4547 2.8370 36 1 5.1912 -3.1933 3.6876 37 1 5.0943 -5.9896 6.0813 38 1 3.7674 0.2271 -1.8721 39 1 3.6746 1.9979 -2.0270 40 1 5.9766 1.1860 -2.4624 41 1 6.0169 0.4352 -0.8493 42 1 5.6429 3.4106 -1.4182 43 1 7.1388 2.6462 -0.8291 44 1 5.8485 3.6370 1.0423 45 1 5.9423 1.8661 1.1974 46 1 3.6004 3.4287 0.0199 47 1 3.6404 2.6772 1.6330 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424071852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:09 Heat of formation + Delta-G solvation = -163.722995 kcal Electronic energy + Delta-G solvation = -28023.471529 eV Core-core repulsion = 24204.484946 eV Total energy + Delta-G solvation = -3818.986582 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.40753 -40.67883 -39.17617 -37.48049 -36.64815 -34.85971 -34.76397 -31.91716 -31.85948 -31.34007 -28.71822 -28.01441 -25.57093 -24.76505 -23.80943 -22.53211 -21.86375 -21.22873 -20.17945 -18.93883 -18.69740 -18.14229 -17.79308 -17.47171 -17.05513 -16.51139 -16.43068 -15.83094 -15.63908 -15.27620 -14.99859 -14.77105 -14.63122 -14.40223 -14.24271 -13.83715 -13.76369 -13.46092 -13.36741 -13.30082 -13.23780 -13.00217 -12.76783 -12.49794 -12.28377 -12.15841 -11.99623 -11.80637 -11.67733 -11.57130 -11.50779 -11.28943 -11.22419 -11.09162 -10.82412 -10.45747 -10.15557 -9.50817 -8.11631 -6.21343 0.95617 1.42636 1.44764 1.52377 1.57614 1.80997 2.14177 2.45989 3.21429 3.31738 3.58219 3.65558 3.69025 3.90219 4.07921 4.13586 4.16225 4.18605 4.21583 4.23075 4.38261 4.40876 4.44868 4.59191 4.60154 4.72195 4.83509 4.95222 5.00327 5.02798 5.14591 5.16110 5.22738 5.30067 5.31082 5.34411 5.39572 5.49968 5.59829 5.89128 6.02576 6.18072 6.33873 6.49622 6.60571 6.62741 6.97470 7.25518 7.46483 8.99241 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015503 B = 0.003718 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.699562 B = 7528.163430 C = 7995.927063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.333 6.333 3 C 0.451 3.549 4 O -0.535 6.535 5 C 0.195 3.805 6 N -0.709 5.709 7 C 0.492 3.508 8 O -0.534 6.534 9 C 0.089 3.911 10 H 0.109 0.891 11 N -0.818 5.818 12 C -0.079 4.079 13 C 0.040 3.960 14 C -0.543 4.543 15 H 0.053 0.947 16 C 0.004 3.996 17 N -0.928 5.928 18 Si 0.955 3.045 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.267 1.267 22 C -0.123 4.123 23 C -0.108 4.108 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.109 4.109 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.416 0.584 31 H 0.345 0.655 32 H 0.347 0.653 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.006 0.994 36 H -0.006 1.006 37 H 0.262 0.738 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 17.689 -13.809 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.248 6.248 3 C 0.294 3.706 4 O -0.425 6.425 5 C 0.106 3.894 6 N -0.366 5.366 7 C 0.277 3.723 8 O -0.410 6.410 9 C -0.026 4.026 10 H 0.127 0.873 11 N -0.347 5.347 12 C -0.117 4.117 13 C 0.003 3.997 14 C -0.581 4.581 15 H 0.071 0.929 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.781 3.219 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.162 4.162 23 C -0.146 4.146 24 C -0.156 4.156 25 C -0.153 4.153 26 C -0.147 4.147 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.255 0.745 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.024 0.976 36 H 0.013 0.987 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.170 17.274 -13.777 22.127 hybrid contribution -1.208 0.215 0.448 1.307 sum -0.038 17.490 -13.329 21.990 Atomic orbital electron populations 1.23433 0.76623 1.04711 1.02118 1.86922 1.23455 1.32159 1.82226 1.24835 0.93200 0.81470 0.71120 1.90615 1.67591 1.37129 1.47194 1.20312 0.83474 0.90064 0.95546 1.46129 1.54286 1.04257 1.31905 1.22246 0.79747 0.84836 0.85463 1.90646 1.37344 1.84369 1.28606 1.21571 1.01116 0.86464 0.93484 0.87348 1.58970 1.15978 1.31960 1.27764 1.21338 0.97402 0.99599 0.93380 1.18821 0.94241 0.94049 0.92588 1.21701 1.08951 1.21430 1.06053 0.92893 1.25847 0.96361 0.95667 1.01484 1.70087 1.24766 1.25650 1.36366 0.85654 0.78940 0.78068 0.79275 1.19713 1.20909 1.19231 1.21896 0.98528 1.03411 0.92335 1.21442 0.92339 0.98823 1.01956 1.21583 1.01614 0.96770 0.95614 1.21576 0.92022 1.03789 0.97880 1.21755 0.98582 0.92683 1.01674 0.92232 0.91725 0.86903 0.74545 0.84148 0.84004 0.92054 0.94113 0.97561 0.98724 0.92960 0.91184 0.90459 0.90603 0.92006 0.91214 0.90096 0.89139 0.90978 0.89198 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 10.56 113.37 1.20 1.82 16 2 O -0.33 -10.27 6.72 -43.69 -0.29 -10.56 16 3 C 0.45 12.95 6.71 71.23 0.48 13.43 16 4 O -0.54 -16.83 15.84 21.97 0.35 -16.49 16 5 C 0.19 4.27 0.63 2.86 0.00 4.27 16 6 N -0.71 -15.74 4.03 -426.34 -1.72 -17.45 16 7 C 0.49 13.68 6.00 87.66 0.53 14.21 16 8 O -0.53 -17.06 11.50 20.38 0.23 -16.82 16 9 C 0.09 2.77 3.15 44.17 0.14 2.91 16 10 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 11 N -0.82 -25.97 8.44 -171.80 -1.45 -27.42 16 12 C -0.08 -3.09 4.78 30.60 0.15 -2.94 16 13 C 0.04 2.05 4.86 29.85 0.15 2.20 16 14 C -0.54 -30.58 9.11 25.60 0.23 -30.34 16 15 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 16 C 0.00 0.25 5.46 84.66 0.46 0.71 16 17 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 18 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 C -0.12 -2.50 4.50 30.59 0.14 -2.36 16 23 C -0.11 -1.63 5.77 30.59 0.18 -1.46 16 24 C -0.12 -1.34 5.92 30.59 0.18 -1.16 16 25 C -0.12 -1.35 5.75 30.58 0.18 -1.17 16 26 C -0.11 -1.83 4.31 30.58 0.13 -1.70 16 27 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 28 H 0.06 1.49 8.13 -2.38 -0.02 1.47 16 29 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.42 7.60 7.32 -92.71 -0.68 6.92 16 31 H 0.34 11.32 8.58 -89.69 -0.77 10.55 16 32 H 0.35 9.26 9.06 -89.69 -0.81 8.45 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.01 0.34 7.75 -2.38 -0.02 0.32 16 36 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 38 H 0.07 1.79 6.17 -2.39 -0.01 1.77 16 39 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.03 7.60 -2.39 -0.02 1.01 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.07 0.81 6.86 -2.39 -0.02 0.80 16 46 H 0.09 1.55 7.87 -2.39 -0.02 1.53 16 47 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -70.70 371.30 2.29 -68.41 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -1.27 Total: 31.54 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 4.13 Total: -1.59 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -2.88 Total: -100.70 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: 0.29 Total: -43.88 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -70.70 2.29 -68.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424071852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.315 kcal (2) G-P(sol) polarization free energy of solvation -70.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds