Wall clock time and date at job start Fri Apr 10 2020 18:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47354 * 34.99661 * 5 3 2 7 7 C 1.34780 * 120.00120 * 300.00487 * 6 5 3 8 8 O 1.21283 * 120.00024 * 359.97438 * 7 6 5 9 9 C 1.50694 * 119.99916 * 179.97438 * 7 6 5 10 10 H 1.08997 * 109.47242 * 39.99979 * 9 7 6 11 11 N 1.46899 * 109.47352 * 159.99811 * 9 7 6 12 12 C 1.53009 * 109.47474 * 279.99969 * 9 7 6 13 13 C 1.52999 * 109.46952 * 175.00024 * 12 9 7 14 14 C 1.50705 * 109.46774 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99716 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00070 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99865 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00084 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47369 * 59.99838 * 18 16 14 20 20 H 1.48500 * 109.47136 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46976 * 299.99767 * 18 16 14 22 22 C 1.53000 * 109.46977 * 275.00445 * 5 3 2 23 23 C 1.53005 * 109.47254 * 180.02562 * 22 5 3 24 24 C 1.53001 * 109.46991 * 59.99656 * 23 22 5 25 25 C 1.53001 * 109.47030 * 300.00257 * 24 23 22 26 26 C 1.52990 * 109.47371 * 154.99972 * 5 3 2 27 27 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 29 29 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 30 30 H 0.96998 * 119.99948 * 119.99992 * 6 5 3 31 31 H 1.00902 * 111.00266 * 296.05157 * 11 9 7 32 32 H 1.00904 * 110.99745 * 60.00249 * 11 9 7 33 33 H 1.08995 * 109.47008 * 295.00241 * 12 9 7 34 34 H 1.08995 * 109.46671 * 55.00165 * 12 9 7 35 35 H 1.09002 * 109.47076 * 299.99836 * 13 12 9 36 36 H 1.08995 * 109.47318 * 60.00537 * 13 12 9 37 37 H 0.97003 * 119.99729 * 180.02562 * 17 16 14 38 38 H 1.09005 * 109.47164 * 299.99603 * 22 5 3 39 39 H 1.08996 * 109.47906 * 59.99860 * 22 5 3 40 40 H 1.09000 * 109.46777 * 299.99399 * 23 22 5 41 41 H 1.08998 * 109.47396 * 179.97438 * 23 22 5 42 42 H 1.08996 * 109.47265 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.47159 * 60.00017 * 24 23 22 44 44 H 1.09005 * 109.47347 * 300.00233 * 25 24 23 45 45 H 1.09004 * 109.47157 * 180.02562 * 25 24 23 46 46 H 1.08997 * 109.47512 * 300.00062 * 26 5 3 47 47 H 1.09000 * 109.47240 * 59.99985 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1136 0.1704 -0.7911 7 6 3.8542 -1.1044 -0.4390 8 8 3.1681 -1.3373 0.5337 9 6 4.4167 -2.2405 -1.2537 10 1 5.4372 -2.0022 -1.5534 11 7 4.4173 -3.4682 -0.4471 12 6 3.5547 -2.4498 -2.5004 13 6 4.1947 -3.5180 -3.3894 14 6 3.3460 -3.7237 -4.6177 15 1 2.4405 -3.1502 -4.7506 16 6 3.7249 -4.6447 -5.5711 17 7 4.8272 -5.3434 -5.4090 18 14 2.6733 -4.8991 -7.0938 19 1 2.5754 -3.6229 -7.8468 20 1 3.2943 -5.9360 -7.9567 21 1 1.3144 -5.3404 -6.6889 22 6 4.0816 1.1763 1.4378 23 6 5.6095 1.2570 1.4385 24 6 6.0501 2.5895 0.8291 25 6 5.5347 2.6880 -0.6082 26 6 4.0074 2.6070 -0.6091 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.6626 0.3566 -1.5688 31 1 5.0310 -3.3777 0.3488 32 1 3.4819 -3.7105 -0.1567 33 1 2.5578 -2.7745 -2.2025 34 1 3.4817 -1.5132 -3.0530 35 1 5.1916 -3.1932 -3.6873 36 1 4.2676 -4.4546 -2.8368 37 1 5.0940 -5.9911 -6.0800 38 1 3.6745 1.9981 2.0270 39 1 3.7674 0.2273 1.8722 40 1 6.0170 0.4355 0.8493 41 1 5.9766 1.1872 2.4625 42 1 7.1385 2.6468 0.8292 43 1 5.6425 3.4109 1.4183 44 1 5.9422 1.8665 -1.1975 45 1 5.8490 3.6371 -1.0425 46 1 3.6404 2.6773 -1.6330 47 1 3.6003 3.4288 -0.0200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424071857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:14 Heat of formation + Delta-G solvation = -142.276230 kcal Electronic energy + Delta-G solvation = -28022.380780 eV Core-core repulsion = 24204.324199 eV Total energy + Delta-G solvation = -3818.056581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37281 -39.52256 -38.22131 -36.33084 -35.14420 -33.92338 -32.78919 -31.18382 -30.44604 -30.04555 -27.72467 -26.33191 -24.22535 -23.52344 -23.06560 -21.08274 -20.84186 -19.89225 -19.25964 -17.85777 -17.39789 -16.73786 -16.44569 -16.14802 -15.82345 -15.36984 -14.95977 -14.58892 -14.43116 -14.29242 -13.92352 -13.67989 -13.43857 -13.35381 -13.00967 -12.66204 -12.54811 -12.43566 -12.29431 -12.01893 -11.97610 -11.57788 -11.44025 -11.10888 -10.91715 -10.87629 -10.69719 -10.66000 -10.57801 -10.55845 -10.30638 -9.94286 -9.76401 -9.34459 -9.11708 -8.99693 -8.33093 -8.18101 -5.93449 -3.95484 2.06881 2.64379 2.91733 3.18393 3.35961 3.40632 3.43038 4.17863 4.37580 4.49347 4.50386 4.77718 4.78614 4.90310 4.96817 5.05244 5.14148 5.14290 5.18436 5.21384 5.34164 5.41242 5.42126 5.54858 5.55323 5.62221 5.72338 5.77165 5.81721 5.86025 5.89695 6.02134 6.09261 6.33401 6.41713 6.46090 6.68529 7.10350 7.38038 7.58573 7.73073 7.76502 7.81540 7.97018 8.13855 8.36680 8.49171 9.12371 9.67612 11.17388 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015503 B = 0.003718 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.675827 B = 7528.472889 C = 7996.053340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.314 6.314 3 C 0.459 3.541 4 O -0.517 6.517 5 C 0.194 3.806 6 N -0.722 5.722 7 C 0.484 3.516 8 O -0.517 6.517 9 C 0.081 3.919 10 H 0.096 0.904 11 N -0.806 5.806 12 C -0.093 4.093 13 C 0.032 3.968 14 C -0.522 4.522 15 H 0.051 0.949 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.128 4.128 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.113 4.113 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.406 0.594 31 H 0.333 0.667 32 H 0.348 0.652 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.012 0.988 36 H 0.035 0.965 37 H 0.260 0.740 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 16.199 14.030 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.228 6.228 3 C 0.300 3.700 4 O -0.405 6.405 5 C 0.105 3.895 6 N -0.379 5.379 7 C 0.270 3.730 8 O -0.392 6.392 9 C -0.035 4.035 10 H 0.113 0.887 11 N -0.334 5.334 12 C -0.132 4.132 13 C -0.006 4.006 14 C -0.561 4.561 15 H 0.069 0.931 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.166 4.166 23 C -0.150 4.150 24 C -0.159 4.159 25 C -0.156 4.156 26 C -0.151 4.151 27 H 0.119 0.881 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.243 0.757 31 H 0.145 0.855 32 H 0.162 0.838 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.782 15.759 13.998 21.093 hybrid contribution -1.060 0.688 -0.557 1.381 sum -0.278 16.447 13.442 21.243 Atomic orbital electron populations 1.23266 0.77644 1.03706 1.01717 1.86933 1.22125 1.31461 1.82246 1.24181 0.92007 0.81951 0.71817 1.90636 1.66916 1.36747 1.46247 1.20100 0.85331 0.89287 0.94766 1.46305 1.54844 1.04942 1.31782 1.22724 0.80005 0.84420 0.85881 1.90637 1.36729 1.84007 1.27831 1.21801 1.01219 0.85656 0.94782 0.88654 1.59003 1.15817 1.31618 1.26954 1.21627 0.97979 1.01120 0.92430 1.19011 0.95081 0.93731 0.92728 1.21242 1.08550 1.21346 1.04933 0.93119 1.24975 0.95143 0.95940 0.98184 1.69963 1.23109 1.24966 1.35154 0.86730 0.80695 0.77760 0.83202 1.20401 1.21329 1.20345 1.21938 0.96888 1.04568 0.93206 1.21453 0.94237 0.97998 1.01267 1.21586 1.00726 0.97704 0.95910 1.21551 0.93918 1.02675 0.97487 1.21719 0.96940 0.94336 1.02106 0.88125 0.92419 0.92329 0.75738 0.85545 0.83792 0.92832 0.93063 0.96953 0.94690 0.93064 0.90935 0.88772 0.91345 0.91466 0.91534 0.91816 0.91318 0.90881 0.90521 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.31 -4.87 6.73 -47.38 -0.32 -5.18 16 3 C 0.46 6.70 6.71 36.01 0.24 6.95 16 4 O -0.52 -8.24 15.84 -18.75 -0.30 -8.54 16 5 C 0.19 2.24 0.63 -132.97 -0.08 2.16 16 6 N -0.72 -8.49 4.03 -48.69 -0.20 -8.68 16 7 C 0.48 6.92 6.00 -10.99 -0.07 6.86 16 8 O -0.52 -8.36 11.50 -18.95 -0.22 -8.58 16 9 C 0.08 1.28 3.15 -68.86 -0.22 1.06 16 10 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 11 N -0.81 -12.83 8.44 -5.65 -0.05 -12.88 16 12 C -0.09 -1.83 4.78 -26.73 -0.13 -1.96 16 13 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 14 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 15 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 18 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.13 -1.37 4.50 -26.73 -0.12 -1.49 16 23 C -0.11 -0.96 5.77 -26.73 -0.15 -1.12 16 24 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 25 C -0.12 -0.86 5.75 -26.76 -0.15 -1.02 16 26 C -0.11 -1.06 4.31 -26.76 -0.12 -1.17 16 27 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 30 H 0.41 4.10 7.32 -40.82 -0.30 3.80 16 31 H 0.33 4.54 9.06 -39.29 -0.36 4.18 16 32 H 0.35 5.67 8.58 -39.29 -0.34 5.33 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.22 6.17 -51.93 -0.32 0.90 16 40 H 0.07 0.64 7.60 -51.93 -0.39 0.24 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.49 6.86 -51.93 -0.36 0.13 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.09 0.86 7.87 -51.93 -0.41 0.45 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -32.86 371.30 -8.11 -40.97 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.91 Total: 8.64 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.44 Total: -2.00 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.49 Total: -47.53 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.83 Total: -22.30 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.86 -8.11 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424071857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.304 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds