Wall clock time and date at job start Fri Apr 10 2020 18:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47354 * 34.99661 * 5 3 2 7 7 C 1.34780 * 120.00120 * 300.00487 * 6 5 3 8 8 O 1.21283 * 120.00024 * 359.97438 * 7 6 5 9 9 C 1.50694 * 119.99916 * 179.97438 * 7 6 5 10 10 H 1.08997 * 109.47242 * 39.99979 * 9 7 6 11 11 N 1.46899 * 109.47352 * 159.99811 * 9 7 6 12 12 C 1.53009 * 109.47474 * 279.99969 * 9 7 6 13 13 C 1.52999 * 109.46952 * 175.00024 * 12 9 7 14 14 C 1.50705 * 109.46774 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99716 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00070 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99865 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00084 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47369 * 59.99838 * 18 16 14 20 20 H 1.48500 * 109.47136 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46976 * 299.99767 * 18 16 14 22 22 C 1.53000 * 109.46977 * 275.00445 * 5 3 2 23 23 C 1.53005 * 109.47254 * 180.02562 * 22 5 3 24 24 C 1.53001 * 109.46991 * 59.99656 * 23 22 5 25 25 C 1.53001 * 109.47030 * 300.00257 * 24 23 22 26 26 C 1.52990 * 109.47371 * 154.99972 * 5 3 2 27 27 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 29 29 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 30 30 H 0.96998 * 119.99948 * 119.99992 * 6 5 3 31 31 H 1.00902 * 111.00266 * 296.05157 * 11 9 7 32 32 H 1.00904 * 110.99745 * 60.00249 * 11 9 7 33 33 H 1.08995 * 109.47008 * 295.00241 * 12 9 7 34 34 H 1.08995 * 109.46671 * 55.00165 * 12 9 7 35 35 H 1.09002 * 109.47076 * 299.99836 * 13 12 9 36 36 H 1.08995 * 109.47318 * 60.00537 * 13 12 9 37 37 H 0.97003 * 119.99729 * 180.02562 * 17 16 14 38 38 H 1.09005 * 109.47164 * 299.99603 * 22 5 3 39 39 H 1.08996 * 109.47906 * 59.99860 * 22 5 3 40 40 H 1.09000 * 109.46777 * 299.99399 * 23 22 5 41 41 H 1.08998 * 109.47396 * 179.97438 * 23 22 5 42 42 H 1.08996 * 109.47265 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.47159 * 60.00017 * 24 23 22 44 44 H 1.09005 * 109.47347 * 300.00233 * 25 24 23 45 45 H 1.09004 * 109.47157 * 180.02562 * 25 24 23 46 46 H 1.08997 * 109.47512 * 300.00062 * 26 5 3 47 47 H 1.09000 * 109.47240 * 59.99985 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1136 0.1704 -0.7911 7 6 3.8542 -1.1044 -0.4390 8 8 3.1681 -1.3373 0.5337 9 6 4.4167 -2.2405 -1.2537 10 1 5.4372 -2.0022 -1.5534 11 7 4.4173 -3.4682 -0.4471 12 6 3.5547 -2.4498 -2.5004 13 6 4.1947 -3.5180 -3.3894 14 6 3.3460 -3.7237 -4.6177 15 1 2.4405 -3.1502 -4.7506 16 6 3.7249 -4.6447 -5.5711 17 7 4.8272 -5.3434 -5.4090 18 14 2.6733 -4.8991 -7.0938 19 1 2.5754 -3.6229 -7.8468 20 1 3.2943 -5.9360 -7.9567 21 1 1.3144 -5.3404 -6.6889 22 6 4.0816 1.1763 1.4378 23 6 5.6095 1.2570 1.4385 24 6 6.0501 2.5895 0.8291 25 6 5.5347 2.6880 -0.6082 26 6 4.0074 2.6070 -0.6091 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.6626 0.3566 -1.5688 31 1 5.0310 -3.3777 0.3488 32 1 3.4819 -3.7105 -0.1567 33 1 2.5578 -2.7745 -2.2025 34 1 3.4817 -1.5132 -3.0530 35 1 5.1916 -3.1932 -3.6873 36 1 4.2676 -4.4546 -2.8368 37 1 5.0940 -5.9911 -6.0800 38 1 3.6745 1.9981 2.0270 39 1 3.7674 0.2273 1.8722 40 1 6.0170 0.4355 0.8493 41 1 5.9766 1.1872 2.4625 42 1 7.1385 2.6468 0.8292 43 1 5.6425 3.4109 1.4183 44 1 5.9422 1.8665 -1.1975 45 1 5.8490 3.6371 -1.0425 46 1 3.6404 2.6773 -1.6330 47 1 3.6003 3.4288 -0.0200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424071857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:13 Heat of formation + Delta-G solvation = -163.718853 kcal Electronic energy + Delta-G solvation = -28023.310602 eV Core-core repulsion = 24204.324199 eV Total energy + Delta-G solvation = -3818.986403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.40758 -40.67925 -39.17670 -37.48092 -36.64841 -34.85950 -34.76409 -31.91701 -31.85912 -31.33997 -28.71843 -28.01414 -25.57110 -24.76521 -23.80946 -22.53221 -21.86394 -21.22848 -20.17944 -18.93883 -18.69716 -18.14191 -17.79313 -17.47179 -17.05515 -16.51162 -16.43056 -15.83102 -15.63937 -15.27584 -14.99876 -14.77104 -14.63151 -14.40276 -14.24250 -13.83717 -13.76394 -13.46089 -13.36768 -13.30073 -13.23820 -13.00245 -12.76748 -12.49792 -12.28347 -12.15811 -11.99657 -11.80673 -11.67759 -11.57117 -11.50785 -11.28951 -11.22439 -11.09140 -10.82406 -10.45747 -10.15530 -9.50827 -8.11621 -6.21355 0.95622 1.42650 1.44756 1.52386 1.57568 1.81031 2.14157 2.46002 3.21456 3.31765 3.58231 3.65553 3.69007 3.90224 4.07957 4.13601 4.16219 4.18608 4.21608 4.23085 4.38263 4.40877 4.44856 4.59156 4.60171 4.72215 4.83521 4.95219 5.00336 5.02802 5.14576 5.16106 5.22752 5.30061 5.31068 5.34392 5.39566 5.49980 5.59803 5.89156 6.02607 6.18075 6.33831 6.49633 6.60557 6.62727 6.97439 7.25512 7.46507 8.99227 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015503 B = 0.003718 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.675827 B = 7528.472889 C = 7996.053340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.334 6.334 3 C 0.451 3.549 4 O -0.535 6.535 5 C 0.195 3.805 6 N -0.709 5.709 7 C 0.492 3.508 8 O -0.534 6.534 9 C 0.089 3.911 10 H 0.109 0.891 11 N -0.818 5.818 12 C -0.079 4.079 13 C 0.040 3.960 14 C -0.543 4.543 15 H 0.053 0.947 16 C 0.004 3.996 17 N -0.928 5.928 18 Si 0.955 3.045 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.123 4.123 23 C -0.108 4.108 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.109 4.109 27 H 0.113 0.887 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.416 0.584 31 H 0.347 0.653 32 H 0.345 0.655 33 H 0.040 0.960 34 H 0.061 0.939 35 H -0.006 1.006 36 H 0.006 0.994 37 H 0.262 0.738 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.505 17.693 13.805 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.248 6.248 3 C 0.294 3.706 4 O -0.425 6.425 5 C 0.106 3.894 6 N -0.366 5.366 7 C 0.277 3.723 8 O -0.410 6.410 9 C -0.026 4.026 10 H 0.127 0.873 11 N -0.347 5.347 12 C -0.117 4.117 13 C 0.003 3.997 14 C -0.581 4.581 15 H 0.071 0.929 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.781 3.219 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.162 4.162 23 C -0.146 4.146 24 C -0.156 4.156 25 C -0.153 4.153 26 C -0.147 4.147 27 H 0.131 0.869 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.255 0.745 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.013 0.987 36 H 0.024 0.976 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.093 0.907 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.169 17.279 13.774 22.128 hybrid contribution -1.209 0.215 -0.448 1.307 sum -0.040 17.493 13.326 21.991 Atomic orbital electron populations 1.23433 0.76619 1.04713 1.02119 1.86922 1.23459 1.32159 1.82229 1.24836 0.93201 0.81470 0.71119 1.90614 1.67592 1.37129 1.47191 1.20312 0.83472 0.90062 0.95544 1.46133 1.54286 1.04257 1.31911 1.22245 0.79738 0.84835 0.85467 1.90645 1.37379 1.84368 1.28573 1.21572 1.01117 0.86466 0.93486 0.87347 1.58971 1.15982 1.31958 1.27761 1.21338 0.97401 0.99601 0.93379 1.18821 0.94243 0.94051 0.92588 1.21702 1.08936 1.21406 1.06085 0.92892 1.25845 0.96372 0.95656 1.01491 1.70091 1.24794 1.25629 1.36355 0.85654 0.78937 0.78065 0.79279 1.19231 1.20909 1.19715 1.21898 0.98528 1.03413 0.92335 1.21445 0.92339 0.98821 1.01954 1.21582 1.01614 0.96771 0.95614 1.21575 0.92024 1.03794 0.97879 1.21747 0.98581 0.92686 1.01675 0.86902 0.91724 0.92230 0.74545 0.84004 0.84150 0.94115 0.92052 0.98720 0.97560 0.92963 0.90463 0.91181 0.92000 0.90605 0.90096 0.91213 0.90984 0.89140 0.90725 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 10.56 113.37 1.20 1.82 16 2 O -0.33 -10.27 6.73 -43.71 -0.29 -10.56 16 3 C 0.45 12.95 6.71 71.24 0.48 13.43 16 4 O -0.54 -16.83 15.84 21.98 0.35 -16.48 16 5 C 0.19 4.27 0.63 2.85 0.00 4.27 16 6 N -0.71 -15.74 4.03 -426.34 -1.72 -17.46 16 7 C 0.49 13.68 6.00 87.65 0.53 14.21 16 8 O -0.53 -17.06 11.50 20.39 0.23 -16.82 16 9 C 0.09 2.77 3.15 44.17 0.14 2.91 16 10 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 11 N -0.82 -25.97 8.44 -171.80 -1.45 -27.42 16 12 C -0.08 -3.09 4.78 30.60 0.15 -2.94 16 13 C 0.04 2.05 4.86 29.85 0.15 2.19 16 14 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 15 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 16 C 0.00 0.25 5.46 84.65 0.46 0.71 16 17 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 18 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 22 C -0.12 -2.50 4.50 30.60 0.14 -2.36 16 23 C -0.11 -1.63 5.77 30.60 0.18 -1.46 16 24 C -0.12 -1.34 5.92 30.59 0.18 -1.16 16 25 C -0.12 -1.35 5.75 30.58 0.18 -1.17 16 26 C -0.11 -1.83 4.31 30.57 0.13 -1.70 16 27 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 28 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 29 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 30 H 0.42 7.60 7.32 -92.71 -0.68 6.92 16 31 H 0.35 9.26 9.06 -89.69 -0.81 8.45 16 32 H 0.34 11.32 8.58 -89.69 -0.77 10.55 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 35 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.01 0.34 7.75 -2.39 -0.02 0.32 16 37 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 38 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.07 1.79 6.17 -2.39 -0.01 1.77 16 40 H 0.06 1.03 7.60 -2.39 -0.02 1.01 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 0.81 6.86 -2.38 -0.02 0.80 16 45 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.09 1.55 7.87 -2.39 -0.02 1.53 16 Total: -1.00 -70.69 371.30 2.29 -68.41 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: -1.27 Total: 31.54 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 4.13 Total: -1.59 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -2.88 Total: -100.71 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: 0.29 Total: -43.87 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -70.69 2.29 -68.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424071857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.314 kcal (2) G-P(sol) polarization free energy of solvation -70.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds