Wall clock time and date at job start Fri Apr 10 2020 18:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46494 * 120.00431 * 2 1 4 4 C 1.34780 * 119.99852 * 180.02562 * 2 1 3 5 5 O 1.21281 * 119.99597 * 359.97438 * 4 2 1 6 6 C 1.50696 * 120.00218 * 180.02562 * 4 2 1 7 7 N 1.46903 * 109.47129 * 173.78894 * 6 4 2 8 8 C 1.46847 * 110.99940 * 169.40721 * 7 6 4 9 9 C 1.53039 * 109.52207 * 185.83697 * 8 7 6 10 10 C 1.53116 * 109.27793 * 300.82182 * 9 8 7 11 11 N 1.46507 * 109.57193 * 177.59217 * 10 9 8 12 12 C 1.34773 * 119.99898 * 85.28356 * 11 10 9 13 13 O 1.21585 * 120.00316 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99899 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00396 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47727 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99813 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00545 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99754 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00358 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47171 * 90.00187 * 20 18 16 22 22 H 1.48500 * 109.47311 * 210.00082 * 20 18 16 23 23 H 1.48505 * 109.47199 * 330.00216 * 20 18 16 24 24 C 1.53114 * 109.16402 * 57.65683 * 10 9 8 25 25 C 1.46842 * 110.99904 * 293.61607 * 7 6 4 26 26 H 1.09001 * 109.47100 * 270.00344 * 1 2 3 27 27 H 1.09008 * 109.46960 * 29.99659 * 1 2 3 28 28 H 1.09002 * 109.47669 * 149.99894 * 1 2 3 29 29 H 1.09000 * 109.47508 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47149 * 299.99840 * 3 2 1 31 31 H 1.09000 * 109.47268 * 60.00144 * 3 2 1 32 32 H 1.08998 * 109.46955 * 293.78269 * 6 4 2 33 33 H 1.08994 * 109.47090 * 53.78882 * 6 4 2 34 34 H 1.08997 * 109.46240 * 305.85427 * 8 7 6 35 35 H 1.09005 * 109.46152 * 65.82000 * 8 7 6 36 36 H 1.09000 * 109.49978 * 180.87878 * 9 8 7 37 37 H 1.08993 * 109.50057 * 60.76713 * 9 8 7 38 38 H 1.09003 * 109.52235 * 297.74372 * 10 9 8 39 39 H 0.96994 * 119.99724 * 265.28272 * 11 10 9 40 40 H 0.96998 * 120.00152 * 359.97438 * 14 12 11 41 41 H 1.09009 * 109.46713 * 300.00094 * 15 14 12 42 42 H 1.08999 * 109.46984 * 59.99645 * 15 14 12 43 43 H 0.97006 * 120.00484 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.50472 * 182.40845 * 24 10 9 45 45 H 1.09000 * 109.50485 * 62.28071 * 24 10 9 46 46 H 1.09004 * 109.46374 * 294.17904 * 25 7 6 47 47 H 1.08998 * 109.46456 * 54.15442 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5323 -2.2175 -0.0005 6 6 3.6458 -1.1673 0.0001 7 7 4.1353 -2.5444 0.1492 8 6 5.5813 -2.6182 -0.0958 9 6 6.0293 -4.0814 -0.0756 10 6 5.6914 -4.6948 1.2860 11 7 6.0654 -6.1114 1.2926 12 6 7.3278 -6.4736 1.5949 13 8 8.1563 -5.6249 1.8626 14 7 7.6718 -7.7767 1.6014 15 6 9.0439 -8.1706 1.9305 16 6 9.1646 -9.6714 1.8677 17 1 8.3052 -10.2719 1.6081 18 6 10.3722 -10.2780 2.1405 19 7 11.4189 -9.5468 2.4562 20 14 10.5220 -12.1383 2.0619 21 1 10.9103 -12.5460 0.6877 22 1 11.5577 -12.5926 3.0243 23 1 9.2170 -12.7551 2.4111 24 6 4.1870 -4.5617 1.5379 25 6 3.7924 -3.0845 1.4709 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 3.2692 1.0694 -0.0005 30 1 1.9343 1.8402 -0.8900 31 1 1.9343 1.8402 0.8900 32 1 4.0095 -0.7523 -0.9399 33 1 4.0088 -0.5609 0.8297 34 1 5.8075 -2.1825 -1.0689 35 1 6.1100 -2.0657 0.6811 36 1 7.1053 -4.1348 -0.2419 37 1 5.5114 -4.6314 -0.8612 38 1 6.2397 -4.1698 2.0682 39 1 5.4044 -6.7884 1.0794 40 1 7.0106 -8.4539 1.3889 41 1 9.7326 -7.7201 1.2157 42 1 9.2888 -7.8286 2.9361 43 1 12.2687 -9.9735 2.6478 44 1 3.9467 -4.9582 2.5243 45 1 3.6400 -5.1192 0.7776 46 1 4.3294 -2.5299 2.2404 47 1 2.7193 -2.9876 1.6356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426420810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:26 Heat of formation + Delta-G solvation = -55.600004 kcal Electronic energy + Delta-G solvation = -25932.518350 eV Core-core repulsion = 22150.513084 eV Total energy + Delta-G solvation = -3782.005267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.49514 -39.48874 -38.21041 -35.89006 -34.94296 -33.94528 -32.39110 -31.46129 -30.92980 -29.13408 -27.62857 -26.87365 -25.48539 -23.40046 -23.12215 -22.08459 -20.09849 -19.89282 -19.58257 -17.92815 -17.44915 -16.71520 -16.37466 -16.24567 -15.80080 -15.26387 -15.07217 -14.71499 -14.60318 -14.44058 -13.87141 -13.70041 -13.48393 -13.38706 -13.20658 -13.07029 -12.94694 -12.85695 -12.45484 -12.19162 -12.06493 -11.91075 -11.79261 -11.44968 -11.24760 -10.91819 -10.90310 -10.73213 -10.49064 -10.25606 -10.01291 -9.32726 -9.30847 -9.12898 -8.70353 -8.60811 -8.51629 -7.69054 -6.11333 -4.17516 2.30000 2.50884 3.27812 3.32998 3.35558 3.46352 3.62663 4.02513 4.14457 4.36645 4.53444 4.73250 4.73779 4.81086 4.82252 4.88766 4.95616 5.07391 5.12622 5.15092 5.17416 5.21879 5.24702 5.31192 5.40007 5.47461 5.61460 5.63378 5.79773 5.91871 5.97480 6.03836 6.21704 6.38419 6.66552 6.86938 6.95909 7.01513 7.20957 7.58450 7.62117 7.62604 7.85740 7.97593 8.11120 8.82125 9.02550 9.40202 9.54693 10.98936 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.047761 B = 0.001994 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.117121 B =14035.662827 C =14365.927286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.628 5.628 3 C 0.075 3.925 4 C 0.512 3.488 5 O -0.515 6.515 6 C 0.038 3.962 7 N -0.522 5.522 8 C 0.061 3.939 9 C -0.127 4.127 10 C 0.166 3.834 11 N -0.753 5.753 12 C 0.693 3.307 13 O -0.603 6.603 14 N -0.731 5.731 15 C 0.267 3.733 16 C -0.541 4.541 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.120 4.120 25 C 0.059 3.941 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.391 0.609 40 H 0.386 0.614 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.265 0.735 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.032 0.968 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.230 22.333 -5.599 31.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.365 5.365 3 C -0.068 4.068 4 C 0.299 3.701 5 O -0.389 6.389 6 C -0.094 4.094 7 N -0.247 5.247 8 C -0.067 4.067 9 C -0.166 4.166 10 C 0.060 3.940 11 N -0.408 5.408 12 C 0.393 3.607 13 O -0.483 6.483 14 N -0.383 5.383 15 C 0.146 3.854 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.141 4.141 19 N -0.524 5.524 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.158 4.158 25 C -0.069 4.069 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.224 0.776 40 H 0.218 0.782 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.050 0.950 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.752 22.201 -5.620 30.905 hybrid contribution -0.017 -0.911 0.332 0.970 sum -20.769 21.290 -5.288 30.209 Atomic orbital electron populations 1.21597 0.79088 1.03124 1.01832 1.47798 1.07196 1.06421 1.75068 1.21867 0.97430 0.85409 1.02139 1.20671 0.90113 0.83186 0.76089 1.90707 1.69886 1.30674 1.47606 1.21984 0.92236 0.91895 1.03246 1.61634 1.14607 1.17387 1.31091 1.22100 0.85856 0.97728 1.01002 1.22007 1.01951 0.94301 0.98327 1.20698 0.94300 0.81653 0.97395 1.45221 1.10970 1.07607 1.77040 1.16168 0.82010 0.83995 0.78513 1.90852 1.49872 1.50418 1.57114 1.45720 1.15435 1.04100 1.73016 1.18957 0.75640 0.94506 0.96297 1.21243 0.96546 0.91158 1.48972 0.91958 1.24946 0.95460 0.98856 0.94825 1.69985 1.01059 1.35550 1.45759 0.86411 0.77929 0.84595 0.77922 1.20507 1.21046 1.19795 1.21818 0.95164 0.96245 1.02593 1.22126 1.01806 0.94958 0.88005 0.92826 0.91338 0.90428 0.90211 0.91848 0.91922 0.87686 0.91980 0.90452 0.94375 0.90413 0.90946 0.90036 0.77580 0.78194 0.95806 0.95825 0.92521 0.90894 0.90381 0.94995 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.48 59.84 0.63 1.13 16 2 N -0.63 -4.28 3.27 -189.52 -0.62 -4.90 16 3 C 0.07 0.24 10.58 59.84 0.63 0.88 16 4 C 0.51 4.93 7.21 -10.99 -0.08 4.85 16 5 O -0.51 -6.99 14.28 5.56 0.08 -6.91 16 6 C 0.04 0.30 3.81 -4.98 -0.02 0.28 16 7 N -0.52 -5.50 4.35 -236.11 -1.03 -6.52 16 8 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 9 C -0.13 -1.65 5.68 -26.65 -0.15 -1.80 16 10 C 0.17 2.32 2.52 -67.81 -0.17 2.14 16 11 N -0.75 -11.85 5.09 -58.56 -0.30 -12.15 16 12 C 0.69 14.73 8.54 -86.92 -0.74 13.99 16 13 O -0.60 -15.31 16.00 5.29 0.08 -15.22 16 14 N -0.73 -16.16 5.55 -66.42 -0.37 -16.52 16 15 C 0.27 7.33 5.43 -5.20 -0.03 7.30 16 16 C -0.54 -15.02 9.28 -34.44 -0.32 -15.34 16 17 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 20 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.12 -1.38 5.57 -26.65 -0.15 -1.53 16 25 C 0.06 0.65 5.12 -3.83 -0.02 0.63 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.24 8.07 -51.92 -0.42 -0.18 16 28 H 0.08 0.58 7.42 -51.93 -0.39 0.20 16 29 H 0.08 0.19 5.75 -51.93 -0.30 -0.11 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.11 0.63 7.86 -51.93 -0.41 0.23 16 33 H 0.06 0.39 7.44 -51.93 -0.39 0.00 16 34 H 0.08 0.69 8.01 -51.93 -0.42 0.27 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.31 7.57 -51.93 -0.39 0.92 16 39 H 0.39 5.10 8.62 -40.82 -0.35 4.74 16 40 H 0.39 7.35 8.34 -40.82 -0.34 7.01 16 41 H 0.02 0.72 8.14 -51.92 -0.42 0.30 16 42 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 1.04 6.05 -51.93 -0.31 0.73 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -36.22 378.41 -9.16 -45.39 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -7.90 Total: 5.94 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: -0.54 Total: 14.80 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -1.58 Total: -65.89 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.16 Total: -22.13 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.22 -9.16 -45.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426420810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.213 kcal (2) G-P(sol) polarization free energy of solvation -36.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds