Wall clock time and date at job start Fri Apr 10 2020 18:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46494 * 120.00431 * 2 1 4 4 C 1.34780 * 119.99852 * 180.02562 * 2 1 3 5 5 O 1.21281 * 119.99597 * 359.97438 * 4 2 1 6 6 C 1.50696 * 120.00218 * 180.02562 * 4 2 1 7 7 N 1.46903 * 109.47129 * 173.78894 * 6 4 2 8 8 C 1.46847 * 110.99940 * 169.40721 * 7 6 4 9 9 C 1.53039 * 109.52207 * 185.83697 * 8 7 6 10 10 C 1.53116 * 109.27793 * 300.82182 * 9 8 7 11 11 N 1.46507 * 109.57193 * 177.59217 * 10 9 8 12 12 C 1.34773 * 119.99898 * 85.28356 * 11 10 9 13 13 O 1.21585 * 120.00316 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99899 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00396 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47727 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99813 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00545 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99754 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00358 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47171 * 90.00187 * 20 18 16 22 22 H 1.48500 * 109.47311 * 210.00082 * 20 18 16 23 23 H 1.48505 * 109.47199 * 330.00216 * 20 18 16 24 24 C 1.53114 * 109.16402 * 57.65683 * 10 9 8 25 25 C 1.46842 * 110.99904 * 293.61607 * 7 6 4 26 26 H 1.09001 * 109.47100 * 270.00344 * 1 2 3 27 27 H 1.09008 * 109.46960 * 29.99659 * 1 2 3 28 28 H 1.09002 * 109.47669 * 149.99894 * 1 2 3 29 29 H 1.09000 * 109.47508 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47149 * 299.99840 * 3 2 1 31 31 H 1.09000 * 109.47268 * 60.00144 * 3 2 1 32 32 H 1.08998 * 109.46955 * 293.78269 * 6 4 2 33 33 H 1.08994 * 109.47090 * 53.78882 * 6 4 2 34 34 H 1.08997 * 109.46240 * 305.85427 * 8 7 6 35 35 H 1.09005 * 109.46152 * 65.82000 * 8 7 6 36 36 H 1.09000 * 109.49978 * 180.87878 * 9 8 7 37 37 H 1.08993 * 109.50057 * 60.76713 * 9 8 7 38 38 H 1.09003 * 109.52235 * 297.74372 * 10 9 8 39 39 H 0.96994 * 119.99724 * 265.28272 * 11 10 9 40 40 H 0.96998 * 120.00152 * 359.97438 * 14 12 11 41 41 H 1.09009 * 109.46713 * 300.00094 * 15 14 12 42 42 H 1.08999 * 109.46984 * 59.99645 * 15 14 12 43 43 H 0.97006 * 120.00484 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.50472 * 182.40845 * 24 10 9 45 45 H 1.09000 * 109.50485 * 62.28071 * 24 10 9 46 46 H 1.09004 * 109.46374 * 294.17904 * 25 7 6 47 47 H 1.08998 * 109.46456 * 54.15442 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5323 -2.2175 -0.0005 6 6 3.6458 -1.1673 0.0001 7 7 4.1353 -2.5444 0.1492 8 6 5.5813 -2.6182 -0.0958 9 6 6.0293 -4.0814 -0.0756 10 6 5.6914 -4.6948 1.2860 11 7 6.0654 -6.1114 1.2926 12 6 7.3278 -6.4736 1.5949 13 8 8.1563 -5.6249 1.8626 14 7 7.6718 -7.7767 1.6014 15 6 9.0439 -8.1706 1.9305 16 6 9.1646 -9.6714 1.8677 17 1 8.3052 -10.2719 1.6081 18 6 10.3722 -10.2780 2.1405 19 7 11.4189 -9.5468 2.4562 20 14 10.5220 -12.1383 2.0619 21 1 10.9103 -12.5460 0.6877 22 1 11.5577 -12.5926 3.0243 23 1 9.2170 -12.7551 2.4111 24 6 4.1870 -4.5617 1.5379 25 6 3.7924 -3.0845 1.4709 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 3.2692 1.0694 -0.0005 30 1 1.9343 1.8402 -0.8900 31 1 1.9343 1.8402 0.8900 32 1 4.0095 -0.7523 -0.9399 33 1 4.0088 -0.5609 0.8297 34 1 5.8075 -2.1825 -1.0689 35 1 6.1100 -2.0657 0.6811 36 1 7.1053 -4.1348 -0.2419 37 1 5.5114 -4.6314 -0.8612 38 1 6.2397 -4.1698 2.0682 39 1 5.4044 -6.7884 1.0794 40 1 7.0106 -8.4539 1.3889 41 1 9.7326 -7.7201 1.2157 42 1 9.2888 -7.8286 2.9361 43 1 12.2687 -9.9735 2.6478 44 1 3.9467 -4.9582 2.5243 45 1 3.6400 -5.1192 0.7776 46 1 4.3294 -2.5299 2.2404 47 1 2.7193 -2.9876 1.6356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426420810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:25 Heat of formation + Delta-G solvation = -84.822491 kcal Electronic energy + Delta-G solvation = -25933.785533 eV Core-core repulsion = 22150.513084 eV Total energy + Delta-G solvation = -3783.272449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.35131 -40.84405 -39.33607 -36.56126 -36.30776 -35.79175 -34.37954 -32.70973 -31.86222 -29.89960 -28.99999 -27.92650 -26.22319 -24.83855 -24.25058 -23.50920 -21.75428 -21.03276 -20.19180 -19.66470 -18.16519 -17.98478 -17.61049 -17.20361 -16.94809 -16.58183 -16.41363 -16.09598 -15.82413 -15.41102 -15.11920 -14.98316 -14.70681 -14.40672 -14.13489 -14.04913 -13.98552 -13.82148 -13.38727 -13.34956 -13.05772 -12.92447 -12.87194 -12.77554 -12.70969 -12.43568 -12.21556 -12.18525 -11.83574 -11.55195 -11.46010 -11.18318 -10.79351 -10.76300 -10.20107 -9.65707 -9.56969 -9.29100 -8.27512 -6.43835 1.43789 1.46696 1.57665 1.63495 1.90378 1.99225 2.27413 2.40423 2.89601 3.07231 3.52242 3.58839 3.74309 3.89279 4.05164 4.17974 4.25735 4.29793 4.37754 4.44464 4.46227 4.49083 4.53934 4.61579 4.69735 4.79057 4.89374 4.93582 4.94032 4.94982 5.00923 5.09668 5.16744 5.28325 5.29697 5.50629 5.51920 5.62471 5.71651 5.86584 5.93993 6.04092 6.30003 6.39856 6.67975 7.22063 7.25495 7.34195 7.75554 8.84823 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.047761 B = 0.001994 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.117121 B =14035.662827 C =14365.927286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.626 5.626 3 C 0.068 3.932 4 C 0.505 3.495 5 O -0.565 6.565 6 C 0.039 3.961 7 N -0.536 5.536 8 C 0.069 3.931 9 C -0.122 4.122 10 C 0.164 3.836 11 N -0.729 5.729 12 C 0.693 3.307 13 O -0.647 6.647 14 N -0.725 5.725 15 C 0.286 3.714 16 C -0.555 4.555 17 H 0.083 0.917 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.987 3.013 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.257 1.257 24 C -0.109 4.109 25 C 0.064 3.936 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.041 0.959 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.409 0.591 40 H 0.404 0.596 41 H -0.015 1.015 42 H -0.015 1.015 43 H 0.269 0.731 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.870 22.677 -6.335 32.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.361 5.361 3 C -0.074 4.074 4 C 0.293 3.707 5 O -0.444 6.444 6 C -0.092 4.092 7 N -0.261 5.261 8 C -0.059 4.059 9 C -0.162 4.162 10 C 0.059 3.941 11 N -0.385 5.385 12 C 0.392 3.608 13 O -0.530 6.530 14 N -0.379 5.379 15 C 0.163 3.837 16 C -0.593 4.593 17 H 0.101 0.899 18 C -0.196 4.196 19 N -0.569 5.569 20 Si 0.810 3.190 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.181 1.181 24 C -0.147 4.147 25 C -0.064 4.064 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.146 0.854 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.245 0.755 40 H 0.239 0.761 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.056 0.944 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.484 22.600 -6.382 32.512 hybrid contribution 0.429 -0.860 0.552 1.109 sum -22.055 21.740 -5.829 31.512 Atomic orbital electron populations 1.21670 0.78813 1.03371 1.02067 1.47946 1.07708 1.06955 1.73464 1.22126 0.97790 0.83917 1.03539 1.21017 0.90826 0.83254 0.75562 1.90683 1.70847 1.32529 1.50304 1.22084 0.91126 0.90682 1.05274 1.61559 1.14332 1.19471 1.30742 1.22010 0.85989 0.95614 1.02268 1.21913 1.00270 0.96516 0.97455 1.20864 0.95749 0.80013 0.97490 1.45041 1.09149 1.09157 1.75199 1.16305 0.83189 0.83114 0.78146 1.90820 1.51750 1.51481 1.58951 1.45326 1.14028 1.05141 1.73377 1.18394 0.77563 0.94752 0.93013 1.21607 0.97543 0.91153 1.49033 0.89932 1.26068 0.94865 1.04791 0.93908 1.70145 1.01861 1.38225 1.46638 0.85129 0.78495 0.77246 0.78144 1.19596 1.20863 1.18053 1.21731 0.92756 0.97222 1.02992 1.22028 1.01334 0.94340 0.88682 0.92629 0.88592 0.92636 0.89079 0.90259 0.90684 0.85413 0.89771 0.88437 0.94123 0.93104 0.90768 0.92209 0.75539 0.76118 0.99663 0.99702 0.92242 0.90240 0.90229 0.94441 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.48 127.77 1.34 2.21 16 2 N -0.63 -7.33 3.27 -871.90 -2.85 -10.19 16 3 C 0.07 0.23 10.58 127.77 1.35 1.58 16 4 C 0.51 9.04 7.21 87.66 0.63 9.67 16 5 O -0.57 -15.27 14.28 -3.03 -0.04 -15.32 16 6 C 0.04 0.52 3.81 85.56 0.33 0.84 16 7 N -0.54 -10.40 4.35 -900.93 -3.92 -14.32 16 8 C 0.07 1.34 5.46 86.33 0.47 1.81 16 9 C -0.12 -3.16 5.68 30.65 0.17 -2.98 16 10 C 0.16 4.56 2.52 45.07 0.11 4.68 16 11 N -0.73 -22.83 5.09 -457.44 -2.33 -25.16 16 12 C 0.69 30.11 8.54 179.06 1.53 31.64 16 13 O -0.65 -34.27 16.00 -3.98 -0.06 -34.33 16 14 N -0.73 -32.61 5.55 -482.30 -2.68 -35.28 16 15 C 0.29 16.32 5.43 85.63 0.46 16.78 16 16 C -0.56 -31.02 9.28 25.60 0.24 -30.78 16 17 H 0.08 4.18 7.60 -2.91 -0.02 4.15 16 18 C 0.00 0.18 5.46 84.65 0.46 0.64 16 19 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 20 Si 0.99 43.08 29.54 68.60 2.03 45.11 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 24 C -0.11 -2.40 5.57 30.65 0.17 -2.23 16 25 C 0.06 1.33 5.12 86.33 0.44 1.78 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.10 0.45 8.07 -2.38 -0.02 0.43 16 28 H 0.05 0.84 7.42 -2.39 -0.02 0.82 16 29 H 0.09 0.11 5.75 -2.39 -0.01 0.10 16 30 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.13 1.12 7.86 -2.39 -0.02 1.10 16 33 H 0.08 0.78 7.44 -2.39 -0.02 0.76 16 34 H 0.10 1.51 8.01 -2.39 -0.02 1.49 16 35 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.96 7.57 -2.39 -0.02 1.94 16 39 H 0.41 10.13 8.62 -92.71 -0.80 9.33 16 40 H 0.40 15.11 8.34 -92.71 -0.77 14.34 16 41 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 42 H -0.01 -0.96 8.14 -2.39 -0.02 -0.98 16 43 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 47 H 0.08 1.87 6.05 -2.39 -0.01 1.86 16 Total: -1.00 -82.11 378.41 -2.46 -84.57 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -0.60 Total: 25.97 kcal Atomic # 6 Polarization: 27.92 SS G_CDS: 7.71 Total: 35.64 kcal Atomic # 7 Polarization: -130.14 SS G_CDS: -11.49 Total: -141.63 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -0.11 Total: -49.65 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -82.11 -2.46 -84.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426420810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.257 kcal (2) G-P(sol) polarization free energy of solvation -82.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds