Wall clock time and date at job start Fri Apr 10 2020 18:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47170 * 2 1 4 4 C 1.46959 * 111.00155 * 293.80388 * 3 2 1 5 5 C 1.53049 * 109.36443 * 176.80990 * 4 3 2 6 6 N 1.46963 * 109.36486 * 58.40247 * 5 4 3 7 7 C 1.46896 * 110.99948 * 176.81316 * 6 5 4 8 8 C 1.53002 * 109.47033 * 307.66777 * 7 6 5 9 9 H 1.09004 * 109.46869 * 57.74499 * 8 7 6 10 10 C 1.53001 * 109.47264 * 297.73986 * 8 7 6 11 11 C 1.53006 * 109.47044 * 177.73926 * 8 7 6 12 12 N 1.46502 * 109.46914 * 185.00186 * 11 8 7 13 13 C 1.34772 * 119.99702 * 180.02562 * 12 11 8 14 14 O 1.21590 * 120.00449 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99886 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99847 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.46761 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00378 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99862 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00247 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99940 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47453 * 89.99162 * 21 19 17 23 23 H 1.48505 * 109.47269 * 209.99561 * 21 19 17 24 24 H 1.48503 * 109.47341 * 329.99408 * 21 19 17 25 25 C 1.46959 * 110.87922 * 300.67887 * 6 5 4 26 26 C 1.46963 * 111.00089 * 170.00412 * 3 2 1 27 27 H 1.09006 * 109.47179 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47026 * 299.99695 * 1 2 3 29 29 H 1.09000 * 109.47646 * 59.99680 * 1 2 3 30 30 H 1.09002 * 109.46567 * 240.00576 * 2 1 3 31 31 H 1.09000 * 109.47646 * 120.00320 * 2 1 3 32 32 H 1.09001 * 109.48947 * 296.77739 * 4 3 2 33 33 H 1.08997 * 109.48503 * 56.84377 * 4 3 2 34 34 H 1.08999 * 109.49312 * 298.43408 * 5 4 3 35 35 H 1.08999 * 109.48777 * 178.37022 * 5 4 3 36 36 H 1.09004 * 109.47569 * 67.67089 * 7 6 5 37 37 H 1.08998 * 109.46841 * 187.67369 * 7 6 5 38 38 H 1.08999 * 109.47157 * 300.00243 * 10 8 7 39 39 H 1.09002 * 109.46856 * 60.00077 * 10 8 7 40 40 H 1.09003 * 109.47145 * 179.97438 * 10 8 7 41 41 H 1.08998 * 109.46844 * 305.00347 * 11 8 7 42 42 H 1.09005 * 109.46731 * 65.00193 * 11 8 7 43 43 H 0.97001 * 119.99805 * 359.97438 * 12 11 8 44 44 H 0.96994 * 120.00069 * 359.97438 * 15 13 12 45 45 H 1.08995 * 109.46951 * 299.99438 * 16 15 13 46 46 H 1.09003 * 109.47227 * 60.00170 * 16 15 13 47 47 H 0.97000 * 120.00350 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.48947 * 299.35339 * 25 6 5 49 49 H 1.08993 * 109.48880 * 179.29026 * 25 6 5 50 50 H 1.08997 * 109.48321 * 303.15367 * 26 3 2 51 51 H 1.08999 * 109.48762 * 63.21897 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6731 2.0661 -1.2553 5 6 2.1294 3.5252 -1.1836 6 7 3.5789 3.5714 -0.9454 7 6 4.0685 4.9564 -0.9453 8 6 3.6069 5.6605 -2.2228 9 1 2.5192 5.6250 -2.2844 10 6 4.2100 4.9563 -3.4398 11 6 4.0688 7.1190 -2.1966 12 7 3.5264 7.8240 -3.3607 13 6 3.8039 9.1295 -3.5473 14 8 4.5040 9.7225 -2.7494 15 7 3.3044 9.7783 -4.6179 16 6 3.6056 11.1976 -4.8204 17 6 2.9328 11.6791 -6.0800 18 1 2.3398 10.9963 -6.6704 19 6 3.0734 12.9916 -6.4783 20 7 2.4866 13.4117 -7.5778 21 14 4.0984 14.1728 -5.4568 22 1 5.5068 14.1394 -5.9262 23 1 3.5603 15.5492 -5.6033 24 1 4.0429 13.7690 -4.0288 25 6 3.9254 2.8902 0.3099 26 6 3.4691 1.4311 0.2381 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.1715 1.5697 -2.0879 33 1 0.5938 2.0294 -1.4029 34 1 1.6107 4.0289 -0.3679 35 1 1.8994 4.0248 -2.1246 36 1 3.6716 5.4821 -0.0769 37 1 5.1577 4.9566 -0.9037 38 1 5.2977 4.9918 -3.3781 39 1 3.8809 3.9173 -3.4585 40 1 3.8808 5.4577 -4.3500 41 1 3.7125 7.5966 -1.2840 42 1 5.1579 7.1556 -2.2246 43 1 2.9681 7.3509 -3.9974 44 1 2.7456 9.3055 -5.2543 45 1 3.2386 11.7719 -3.9698 46 1 4.6836 11.3310 -4.9111 47 1 2.5858 14.3350 -7.8581 48 1 3.4270 3.3866 1.1425 49 1 5.0047 2.9269 0.4576 50 1 3.6990 0.9316 1.1792 51 1 3.9878 0.9275 -0.5775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426434233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:35 Heat of formation + Delta-G solvation = -26.512441 kcal Electronic energy + Delta-G solvation = -26075.076441 eV Core-core repulsion = 22430.165600 eV Total energy + Delta-G solvation = -3644.910841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.227 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.01332 -39.28919 -37.37623 -35.31124 -34.14863 -32.81282 -32.18634 -31.26799 -30.86441 -28.00105 -27.38770 -26.12612 -24.29818 -23.95629 -22.11114 -21.85821 -20.57069 -20.25248 -19.77370 -18.12362 -17.03329 -16.32381 -15.99612 -15.72445 -15.49027 -15.26807 -15.10931 -14.99740 -14.75807 -14.39774 -14.29249 -13.73448 -13.67143 -13.32471 -13.04972 -12.88758 -12.60882 -12.53736 -12.32467 -12.28823 -12.14969 -11.99160 -11.67083 -11.62172 -11.38364 -11.17291 -11.09652 -10.97386 -10.86256 -10.73326 -10.63154 -9.93732 -9.56219 -9.42416 -8.82684 -8.80779 -8.71474 -8.60017 -7.96605 -6.18295 -4.19918 3.21613 3.30342 3.37118 3.44496 3.46048 3.61615 3.86044 4.36910 4.44857 4.45409 4.57057 4.68912 4.73175 4.79743 4.82318 5.00031 5.02864 5.04495 5.06343 5.08707 5.10526 5.17398 5.25851 5.35712 5.38336 5.40563 5.51131 5.52534 5.54770 5.59460 5.69498 5.73369 5.80268 5.84502 5.88449 6.08974 6.20974 6.54633 6.57401 6.74973 6.75978 6.78609 6.84418 7.15434 7.28582 7.44934 7.61761 8.31639 8.72891 8.85356 9.25749 9.43866 10.93683 Molecular weight = 312.23amu Principal moments of inertia in cm(-1) A = 0.032432 B = 0.001944 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.137850 B =14397.179453 C =14886.529162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 N -0.542 5.542 4 C 0.055 3.945 5 C 0.050 3.950 6 N -0.535 5.535 7 C 0.064 3.936 8 C -0.105 4.105 9 H 0.078 0.922 10 C -0.138 4.138 11 C 0.147 3.853 12 N -0.753 5.753 13 C 0.694 3.306 14 O -0.605 6.605 15 N -0.723 5.723 16 C 0.238 3.762 17 C -0.542 4.542 18 H 0.079 0.921 19 C 0.077 3.923 20 N -0.894 5.894 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.260 1.260 25 C 0.057 3.943 26 C 0.058 3.942 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.038 0.962 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.392 0.608 44 H 0.392 0.608 45 H 0.023 0.977 46 H 0.018 0.982 47 H 0.267 0.733 48 H 0.043 0.957 49 H 0.080 0.920 50 H 0.077 0.923 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.118 -29.085 15.102 32.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.267 5.267 4 C -0.073 4.073 5 C -0.078 4.078 6 N -0.260 5.260 7 C -0.064 4.064 8 C -0.124 4.124 9 H 0.096 0.904 10 C -0.195 4.195 11 C 0.022 3.978 12 N -0.411 5.411 13 C 0.394 3.606 14 O -0.485 6.485 15 N -0.376 5.376 16 C 0.115 3.885 17 C -0.580 4.580 18 H 0.097 0.903 19 C -0.127 4.127 20 N -0.531 5.531 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.184 1.184 25 C -0.071 4.071 26 C -0.070 4.070 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.226 0.774 44 H 0.225 0.775 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.077 0.923 48 H 0.061 0.939 49 H 0.098 0.902 50 H 0.096 0.904 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.487 -28.327 15.716 32.398 hybrid contribution -0.030 0.264 -0.210 0.338 sum -0.518 -28.063 15.506 32.066 Atomic orbital electron populations 1.21804 0.94766 1.01583 1.02573 1.22054 0.96213 0.88707 1.00717 1.62204 1.13863 1.15792 1.34886 1.22214 1.00657 0.94120 0.90287 1.22279 0.87756 0.96072 1.01694 1.62179 1.13826 1.15793 1.34222 1.22048 1.00782 0.87260 0.96341 1.21482 1.01089 0.93881 0.95909 0.90364 1.21735 1.00996 1.00571 0.96239 1.21032 0.98668 0.89780 0.88342 1.45082 1.57327 1.09806 1.28863 1.16117 0.80813 0.80990 0.82684 1.90860 1.43627 1.67053 1.46945 1.45386 1.53948 1.13270 1.24973 1.19349 0.96110 0.75943 0.97049 1.21105 1.32771 0.96867 1.07229 0.90310 1.24785 0.95146 0.97893 0.94838 1.69881 1.43311 1.17155 1.22771 0.86807 0.80757 0.80267 0.81807 1.19869 1.20956 1.18438 1.22137 1.00568 0.93813 0.90603 1.22138 0.87442 0.96462 1.00957 0.92294 0.91851 0.92585 0.94892 0.90882 0.94014 0.90108 0.93963 0.89514 0.94369 0.90130 0.92602 0.91675 0.92947 0.92164 0.91849 0.77408 0.77514 0.95952 0.96398 0.92304 0.93920 0.90198 0.90421 0.93987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.85 37.16 0.37 -0.44 16 2 C 0.05 0.31 5.68 -3.83 -0.02 0.28 16 3 N -0.54 -3.98 4.71 -234.47 -1.10 -5.08 16 4 C 0.06 0.40 5.41 -3.77 -0.02 0.38 16 5 C 0.05 0.39 5.12 -3.76 -0.02 0.37 16 6 N -0.54 -4.26 4.15 -234.46 -0.97 -5.23 16 7 C 0.06 0.53 4.55 -3.82 -0.02 0.51 16 8 C -0.10 -0.92 1.95 -90.61 -0.18 -1.10 16 9 H 0.08 0.67 6.11 -51.93 -0.32 0.35 16 10 C -0.14 -1.21 8.86 37.16 0.33 -0.88 16 11 C 0.15 1.81 5.06 -4.04 -0.02 1.79 16 12 N -0.75 -10.83 5.29 -65.22 -0.34 -11.18 16 13 C 0.69 13.96 8.57 -86.92 -0.74 13.21 16 14 O -0.61 -14.66 16.34 5.29 0.09 -14.58 16 15 N -0.72 -15.19 5.55 -66.41 -0.37 -15.56 16 16 C 0.24 6.03 4.50 -5.19 -0.02 6.01 16 17 C -0.54 -15.09 9.83 -34.44 -0.34 -15.43 16 18 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16 21 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 25 C 0.06 0.41 5.62 -3.77 -0.02 0.39 16 26 C 0.06 0.40 5.61 -3.76 -0.02 0.38 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.31 6.49 -51.93 -0.34 -0.03 16 30 H 0.03 0.20 8.12 -51.93 -0.42 -0.22 16 31 H 0.07 0.40 8.03 -51.93 -0.42 -0.02 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.53 6.34 -51.93 -0.33 0.21 16 34 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.64 5.87 -51.93 -0.30 0.34 16 36 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.56 7.62 -51.93 -0.40 0.16 16 40 H 0.05 0.47 7.18 -51.93 -0.37 0.10 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.39 4.56 7.67 -40.82 -0.31 4.24 16 44 H 0.39 7.19 8.33 -40.82 -0.34 6.85 16 45 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 46 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 47 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 51 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -33.06 392.74 -10.89 -43.95 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -9.39 Total: 3.06 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -0.83 Total: 7.58 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -2.02 Total: -63.04 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.09 Total: -14.58 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.06 -10.89 -43.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426434233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.440 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds