Wall clock time and date at job start Fri Apr 10 2020 18:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47170 * 2 1 4 4 C 1.46959 * 111.00155 * 293.80388 * 3 2 1 5 5 C 1.53049 * 109.36443 * 176.80990 * 4 3 2 6 6 N 1.46963 * 109.36486 * 58.40247 * 5 4 3 7 7 C 1.46896 * 110.99948 * 176.81316 * 6 5 4 8 8 C 1.53002 * 109.47033 * 307.66777 * 7 6 5 9 9 H 1.09004 * 109.46869 * 57.74499 * 8 7 6 10 10 C 1.53001 * 109.47264 * 297.73986 * 8 7 6 11 11 C 1.53006 * 109.47044 * 177.73926 * 8 7 6 12 12 N 1.46502 * 109.46914 * 185.00186 * 11 8 7 13 13 C 1.34772 * 119.99702 * 180.02562 * 12 11 8 14 14 O 1.21590 * 120.00449 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99886 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99847 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.46761 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00378 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99862 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00247 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99940 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47453 * 89.99162 * 21 19 17 23 23 H 1.48505 * 109.47269 * 209.99561 * 21 19 17 24 24 H 1.48503 * 109.47341 * 329.99408 * 21 19 17 25 25 C 1.46959 * 110.87922 * 300.67887 * 6 5 4 26 26 C 1.46963 * 111.00089 * 170.00412 * 3 2 1 27 27 H 1.09006 * 109.47179 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47026 * 299.99695 * 1 2 3 29 29 H 1.09000 * 109.47646 * 59.99680 * 1 2 3 30 30 H 1.09002 * 109.46567 * 240.00576 * 2 1 3 31 31 H 1.09000 * 109.47646 * 120.00320 * 2 1 3 32 32 H 1.09001 * 109.48947 * 296.77739 * 4 3 2 33 33 H 1.08997 * 109.48503 * 56.84377 * 4 3 2 34 34 H 1.08999 * 109.49312 * 298.43408 * 5 4 3 35 35 H 1.08999 * 109.48777 * 178.37022 * 5 4 3 36 36 H 1.09004 * 109.47569 * 67.67089 * 7 6 5 37 37 H 1.08998 * 109.46841 * 187.67369 * 7 6 5 38 38 H 1.08999 * 109.47157 * 300.00243 * 10 8 7 39 39 H 1.09002 * 109.46856 * 60.00077 * 10 8 7 40 40 H 1.09003 * 109.47145 * 179.97438 * 10 8 7 41 41 H 1.08998 * 109.46844 * 305.00347 * 11 8 7 42 42 H 1.09005 * 109.46731 * 65.00193 * 11 8 7 43 43 H 0.97001 * 119.99805 * 359.97438 * 12 11 8 44 44 H 0.96994 * 120.00069 * 359.97438 * 15 13 12 45 45 H 1.08995 * 109.46951 * 299.99438 * 16 15 13 46 46 H 1.09003 * 109.47227 * 60.00170 * 16 15 13 47 47 H 0.97000 * 120.00350 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.48947 * 299.35339 * 25 6 5 49 49 H 1.08993 * 109.48880 * 179.29026 * 25 6 5 50 50 H 1.08997 * 109.48321 * 303.15367 * 26 3 2 51 51 H 1.08999 * 109.48762 * 63.21897 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6731 2.0661 -1.2553 5 6 2.1294 3.5252 -1.1836 6 7 3.5789 3.5714 -0.9454 7 6 4.0685 4.9564 -0.9453 8 6 3.6069 5.6605 -2.2228 9 1 2.5192 5.6250 -2.2844 10 6 4.2100 4.9563 -3.4398 11 6 4.0688 7.1190 -2.1966 12 7 3.5264 7.8240 -3.3607 13 6 3.8039 9.1295 -3.5473 14 8 4.5040 9.7225 -2.7494 15 7 3.3044 9.7783 -4.6179 16 6 3.6056 11.1976 -4.8204 17 6 2.9328 11.6791 -6.0800 18 1 2.3398 10.9963 -6.6704 19 6 3.0734 12.9916 -6.4783 20 7 2.4866 13.4117 -7.5778 21 14 4.0984 14.1728 -5.4568 22 1 5.5068 14.1394 -5.9262 23 1 3.5603 15.5492 -5.6033 24 1 4.0429 13.7690 -4.0288 25 6 3.9254 2.8902 0.3099 26 6 3.4691 1.4311 0.2381 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.1715 1.5697 -2.0879 33 1 0.5938 2.0294 -1.4029 34 1 1.6107 4.0289 -0.3679 35 1 1.8994 4.0248 -2.1246 36 1 3.6716 5.4821 -0.0769 37 1 5.1577 4.9566 -0.9037 38 1 5.2977 4.9918 -3.3781 39 1 3.8809 3.9173 -3.4585 40 1 3.8808 5.4577 -4.3500 41 1 3.7125 7.5966 -1.2840 42 1 5.1579 7.1556 -2.2246 43 1 2.9681 7.3509 -3.9974 44 1 2.7456 9.3055 -5.2543 45 1 3.2386 11.7719 -3.9698 46 1 4.6836 11.3310 -4.9111 47 1 2.5858 14.3350 -7.8581 48 1 3.4270 3.3866 1.1425 49 1 5.0047 2.9269 0.4576 50 1 3.6990 0.9316 1.1792 51 1 3.9878 0.9275 -0.5775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426434233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:34 Heat of formation + Delta-G solvation = -51.935501 kcal Electronic energy + Delta-G solvation = -26076.178868 eV Core-core repulsion = 22430.165600 eV Total energy + Delta-G solvation = -3646.013267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.227 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.01656 -40.44632 -38.18988 -36.38841 -35.91021 -34.45667 -33.61608 -31.88776 -31.48373 -29.86400 -28.02185 -27.17914 -25.02031 -24.72197 -23.79886 -22.53009 -21.89642 -21.26902 -20.53499 -19.74852 -18.30029 -17.82491 -17.12870 -16.77772 -16.35799 -16.27198 -16.03472 -15.85934 -15.72478 -15.53555 -15.27880 -15.01717 -14.85841 -14.53162 -14.34648 -14.17653 -13.86236 -13.56438 -13.22123 -13.13618 -13.01718 -12.77800 -12.69758 -12.64460 -12.26223 -12.21073 -11.98274 -11.97243 -11.91759 -11.75775 -11.64066 -11.51193 -11.36406 -11.20860 -10.90587 -10.29420 -9.63122 -9.39038 -9.21235 -8.38696 -6.45342 1.34425 1.36253 1.49808 1.87202 2.23048 2.29991 2.87683 2.95281 2.96921 3.51213 3.79307 3.88323 3.96903 3.99125 4.03183 4.19407 4.29550 4.38420 4.45375 4.47189 4.53069 4.59272 4.61225 4.63320 4.72307 4.82241 4.84340 4.85965 4.90555 4.93599 4.95979 5.03611 5.06881 5.08721 5.13153 5.14371 5.26610 5.28804 5.36217 5.46531 5.55004 5.59147 5.97192 5.99935 6.01281 6.17765 6.19912 6.30267 6.56798 7.15678 7.28448 7.68712 8.75956 Molecular weight = 312.23amu Principal moments of inertia in cm(-1) A = 0.032432 B = 0.001944 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.137850 B =14397.179453 C =14886.529162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 N -0.553 5.553 4 C 0.058 3.942 5 C 0.051 3.949 6 N -0.537 5.537 7 C 0.068 3.932 8 C -0.089 4.089 9 H 0.087 0.913 10 C -0.133 4.133 11 C 0.147 3.853 12 N -0.730 5.730 13 C 0.694 3.306 14 O -0.647 6.647 15 N -0.722 5.722 16 C 0.251 3.749 17 C -0.545 4.545 18 H 0.060 0.940 19 C 0.027 3.973 20 N -0.931 5.931 21 Si 0.938 3.062 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.261 1.261 25 C 0.057 3.943 26 C 0.061 3.939 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.086 0.914 34 H 0.032 0.968 35 H 0.091 0.909 36 H 0.035 0.965 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.409 0.591 44 H 0.405 0.595 45 H 0.010 0.990 46 H 0.009 0.991 47 H 0.272 0.728 48 H 0.034 0.966 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 -30.392 15.900 34.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 N -0.278 5.278 4 C -0.070 4.070 5 C -0.077 4.077 6 N -0.262 5.262 7 C -0.061 4.061 8 C -0.108 4.108 9 H 0.105 0.895 10 C -0.190 4.190 11 C 0.022 3.978 12 N -0.387 5.387 13 C 0.393 3.607 14 O -0.529 6.529 15 N -0.376 5.376 16 C 0.127 3.873 17 C -0.583 4.583 18 H 0.078 0.922 19 C -0.174 4.174 20 N -0.570 5.570 21 Si 0.761 3.239 22 H -0.190 1.190 23 H -0.197 1.197 24 H -0.186 1.186 25 C -0.071 4.071 26 C -0.067 4.067 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.050 0.950 35 H 0.109 0.891 36 H 0.053 0.947 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.246 0.754 44 H 0.240 0.760 45 H 0.028 0.972 46 H 0.027 0.973 47 H 0.082 0.918 48 H 0.053 0.947 49 H 0.107 0.893 50 H 0.107 0.893 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.325 -29.709 16.502 33.986 hybrid contribution -0.130 0.558 -0.455 0.732 sum -0.456 -29.150 16.047 33.278 Atomic orbital electron populations 1.21774 0.94326 1.02192 1.02069 1.22094 0.96558 0.88060 1.00985 1.62238 1.14151 1.16596 1.34854 1.22178 1.00934 0.93698 0.90156 1.22280 0.87510 0.96415 1.01463 1.62206 1.13949 1.15369 1.34654 1.21981 1.00921 0.87472 0.95692 1.21346 1.01502 0.91459 0.96509 0.89473 1.21687 1.00608 1.00821 0.95898 1.21174 0.98188 0.91456 0.86967 1.44904 1.56452 1.07829 1.29538 1.16235 0.80295 0.82365 0.81792 1.90831 1.45442 1.68464 1.48208 1.45103 1.54574 1.11999 1.25925 1.18943 0.95015 0.78184 0.95187 1.21282 1.32421 0.96824 1.07818 0.92211 1.25578 0.96253 0.99675 0.95856 1.69977 1.44734 1.17957 1.24295 0.85855 0.79508 0.78513 0.79993 1.18988 1.19743 1.18562 1.22171 1.01053 0.93945 0.89921 1.22135 0.87187 0.96098 1.01322 0.91171 0.92561 0.92802 0.94946 0.90248 0.94541 0.89555 0.94988 0.89057 0.94723 0.89896 0.93132 0.91094 0.92982 0.92947 0.92631 0.75415 0.75989 0.97243 0.97337 0.91841 0.94730 0.89339 0.89335 0.94474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.85 71.98 0.71 -0.67 16 2 C 0.05 0.54 5.68 86.30 0.49 1.03 16 3 N -0.55 -7.39 4.71 -895.72 -4.22 -11.60 16 4 C 0.06 0.77 5.41 86.31 0.47 1.24 16 5 C 0.05 0.72 5.12 86.31 0.44 1.16 16 6 N -0.54 -7.73 4.15 -895.71 -3.72 -11.45 16 7 C 0.07 1.02 4.55 86.30 0.39 1.41 16 8 C -0.09 -1.42 1.95 -10.79 -0.02 -1.44 16 9 H 0.09 1.28 6.11 -2.39 -0.01 1.27 16 10 C -0.13 -2.06 8.86 71.98 0.64 -1.42 16 11 C 0.15 3.42 5.06 86.38 0.44 3.85 16 12 N -0.73 -19.89 5.29 -478.52 -2.53 -22.42 16 13 C 0.69 27.28 8.57 179.06 1.53 28.81 16 14 O -0.65 -31.11 16.34 -4.00 -0.07 -31.17 16 15 N -0.72 -29.85 5.55 -482.29 -2.68 -32.53 16 16 C 0.25 12.66 4.50 85.63 0.38 13.04 16 17 C -0.55 -30.49 9.83 25.60 0.25 -30.24 16 18 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 19 C 0.03 1.52 5.47 84.66 0.46 1.99 16 20 N -0.93 -55.86 13.96 21.45 0.30 -55.56 16 21 Si 0.94 44.63 27.47 68.60 1.88 46.51 16 22 H -0.26 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.26 -12.42 6.54 99.48 0.65 -11.77 16 25 C 0.06 0.75 5.62 86.31 0.48 1.24 16 26 C 0.06 0.74 5.61 86.31 0.48 1.23 16 27 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.53 6.49 -2.39 -0.02 0.51 16 30 H 0.03 0.35 8.12 -2.39 -0.02 0.33 16 31 H 0.08 0.74 8.03 -2.39 -0.02 0.72 16 32 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.09 1.03 6.34 -2.39 -0.02 1.01 16 34 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.09 1.17 5.87 -2.39 -0.01 1.16 16 36 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 1.05 7.62 -2.39 -0.02 1.03 16 40 H 0.05 0.81 7.18 -2.39 -0.02 0.80 16 41 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.41 8.60 7.67 -92.71 -0.71 7.89 16 44 H 0.40 14.48 8.33 -92.71 -0.77 13.71 16 45 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 46 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 47 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 48 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.09 0.88 8.07 -2.39 -0.02 0.86 16 51 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -69.95 392.74 -4.50 -74.45 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -0.63 Total: 22.54 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 7.16 Total: 21.23 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -12.84 Total: -133.56 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.07 Total: -31.17 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -69.95 -4.50 -74.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426434233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.516 kcal (2) G-P(sol) polarization free energy of solvation -69.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds