Wall clock time and date at job start Fri Apr 10 2020 18:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46904 * 109.46724 * 2 1 4 4 C 1.46959 * 110.99621 * 189.99746 * 3 2 1 5 5 C 1.53051 * 109.36476 * 183.18566 * 4 3 2 6 6 N 1.46959 * 109.36681 * 301.60357 * 5 4 3 7 7 C 1.46897 * 110.99898 * 183.18728 * 6 5 4 8 8 C 1.52998 * 109.47349 * 75.79108 * 7 6 5 9 9 H 1.09006 * 109.47221 * 303.98860 * 8 7 6 10 10 C 1.53001 * 109.47293 * 63.98735 * 8 7 6 11 11 C 1.52999 * 109.47350 * 183.98963 * 8 7 6 12 12 N 1.46500 * 109.47156 * 175.00031 * 11 8 7 13 13 C 1.34778 * 119.99948 * 179.97438 * 12 11 8 14 14 O 1.21582 * 119.99711 * 359.97438 * 13 12 11 15 15 N 1.34772 * 119.99976 * 179.97438 * 13 12 11 16 16 C 1.46502 * 120.00206 * 179.97438 * 15 13 12 17 17 C 1.50693 * 109.47486 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00105 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00129 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00285 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00006 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46818 * 90.00500 * 21 19 17 23 23 H 1.48503 * 109.47137 * 209.99956 * 21 19 17 24 24 H 1.48498 * 109.47125 * 330.00493 * 21 19 17 25 25 C 1.46955 * 110.87957 * 59.31754 * 6 5 4 26 26 C 1.46949 * 111.00094 * 313.79533 * 3 2 1 27 27 H 1.08995 * 109.46704 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47165 * 300.00332 * 1 2 3 29 29 H 1.09001 * 109.46969 * 60.00043 * 1 2 3 30 30 H 1.08994 * 109.47537 * 240.00162 * 2 1 3 31 31 H 1.08998 * 109.47419 * 119.99713 * 2 1 3 32 32 H 1.09007 * 109.49037 * 63.21953 * 4 3 2 33 33 H 1.08995 * 109.49465 * 303.15726 * 4 3 2 34 34 H 1.08997 * 109.48945 * 181.62942 * 5 4 3 35 35 H 1.09003 * 109.48440 * 61.56955 * 5 4 3 36 36 H 1.09005 * 109.46867 * 195.78928 * 7 6 5 37 37 H 1.08996 * 109.47029 * 315.79207 * 7 6 5 38 38 H 1.08999 * 109.47136 * 60.24559 * 10 8 7 39 39 H 1.09000 * 109.47319 * 180.24318 * 10 8 7 40 40 H 1.08997 * 109.46999 * 300.24562 * 10 8 7 41 41 H 1.08997 * 109.47134 * 294.99833 * 11 8 7 42 42 H 1.08997 * 109.47053 * 54.99938 * 11 8 7 43 43 H 0.96998 * 120.00068 * 359.97438 * 12 11 8 44 44 H 0.97003 * 120.00031 * 0.02562 * 15 13 12 45 45 H 1.09003 * 109.47212 * 300.00314 * 16 15 13 46 46 H 1.09004 * 109.47012 * 59.99788 * 16 15 13 47 47 H 0.96993 * 120.00500 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.49181 * 60.64919 * 25 6 5 49 49 H 1.08996 * 109.48432 * 180.71515 * 25 6 5 50 50 H 1.09003 * 109.49281 * 296.78125 * 26 3 2 51 51 H 1.09001 * 109.49030 * 56.85215 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4691 1.4312 -0.2382 5 6 3.9516 2.8811 -0.1517 6 7 3.2319 3.6941 -1.1420 7 6 3.7216 5.0791 -1.1420 8 6 5.0742 5.1418 -1.8543 9 1 5.7686 4.4503 -1.3771 10 6 4.8956 4.7527 -3.3232 11 6 5.6308 6.5644 -1.7676 12 7 6.9772 6.5979 -2.3439 13 6 7.6675 7.7550 -2.3770 14 8 7.1725 8.7711 -1.9290 15 7 8.9063 7.7858 -2.9067 16 6 9.6565 9.0436 -2.9432 17 6 11.0015 8.8082 -3.5807 18 1 11.2705 7.8205 -3.9247 19 6 11.8882 9.8540 -3.7257 20 7 11.5604 11.0570 -3.3073 21 14 13.5558 9.5620 -4.5153 22 1 13.4527 9.7723 -5.9817 23 1 14.5456 10.5122 -3.9473 24 1 13.9945 8.1693 -4.2446 25 6 1.7825 3.6479 -0.9037 26 6 1.3000 2.1980 -0.9902 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.6876 1.0337 -1.2294 33 1 3.9807 0.8321 0.5150 34 1 5.0214 2.9211 -0.3567 35 1 3.7578 3.2698 0.8480 36 1 3.0070 5.7171 -1.6622 37 1 3.8358 5.4241 -0.1144 38 1 4.2046 5.4468 -3.8015 39 1 5.8600 4.7932 -3.8296 40 1 4.4950 3.7409 -3.3848 41 1 4.9817 7.2428 -2.3211 42 1 5.6746 6.8743 -0.7236 43 1 7.3720 5.7873 -2.7017 44 1 9.3011 6.9751 -3.2645 45 1 9.1027 9.7802 -3.5255 46 1 9.7952 9.4135 -1.9273 47 1 12.1843 11.7926 -3.4090 48 1 1.5640 4.0454 0.0874 49 1 1.2710 4.2470 -1.6570 50 1 1.4938 1.8093 -1.9900 51 1 0.2301 2.1581 -0.7852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426434234.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:39 Heat of formation + Delta-G solvation = -30.408458 kcal Electronic energy + Delta-G solvation = -25932.832497 eV Core-core repulsion = 22287.752712 eV Total energy + Delta-G solvation = -3645.079785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.227 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.92783 -39.16065 -37.28908 -35.30035 -34.02497 -32.70337 -32.08063 -31.57755 -30.51718 -27.45703 -27.33588 -26.02233 -24.44237 -23.73152 -22.40901 -21.94721 -20.33798 -20.09732 -19.88828 -17.95493 -16.95011 -16.13616 -15.84546 -15.59353 -15.49444 -15.19046 -15.05319 -14.96941 -14.79519 -14.48026 -14.25451 -13.69267 -13.52822 -13.19374 -12.89741 -12.83465 -12.65574 -12.59247 -12.22885 -11.99830 -11.92251 -11.68597 -11.64536 -11.59606 -11.32853 -11.13217 -11.08736 -10.94225 -10.85481 -10.79650 -10.65664 -10.26930 -9.35658 -9.33030 -8.79114 -8.72263 -8.61226 -8.57711 -7.69675 -6.12054 -4.18446 3.26887 3.29055 3.33584 3.36645 3.46693 3.69162 4.02944 4.35816 4.44793 4.51245 4.59542 4.68122 4.78634 4.85261 4.90474 4.99452 5.02380 5.03304 5.08119 5.13834 5.23043 5.23914 5.32027 5.34256 5.42483 5.45438 5.50092 5.53239 5.55501 5.63905 5.71136 5.74089 5.81223 5.92656 5.97091 6.18519 6.27600 6.56111 6.59177 6.78637 6.78929 6.96163 7.18287 7.57053 7.60503 7.61871 7.96061 8.09421 8.80973 9.00650 9.38946 9.53399 10.98226 Molecular weight = 312.23amu Principal moments of inertia in cm(-1) A = 0.037885 B = 0.001816 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.911100 B =15412.187453 C =15788.436889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.051 3.949 3 N -0.542 5.542 4 C 0.058 3.942 5 C 0.055 3.945 6 N -0.536 5.536 7 C 0.063 3.937 8 C -0.096 4.096 9 H 0.074 0.926 10 C -0.136 4.136 11 C 0.146 3.854 12 N -0.755 5.755 13 C 0.692 3.308 14 O -0.603 6.603 15 N -0.730 5.730 16 C 0.267 3.733 17 C -0.541 4.541 18 H 0.062 0.938 19 C 0.063 3.937 20 N -0.886 5.886 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.057 3.943 26 C 0.053 3.947 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.390 0.610 44 H 0.386 0.614 45 H 0.024 0.976 46 H 0.024 0.976 47 H 0.265 0.735 48 H 0.042 0.958 49 H 0.080 0.920 50 H 0.041 0.959 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.686 -23.527 5.070 32.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.267 5.267 4 C -0.070 4.070 5 C -0.073 4.073 6 N -0.261 5.261 7 C -0.065 4.065 8 C -0.115 4.115 9 H 0.093 0.907 10 C -0.193 4.193 11 C 0.021 3.979 12 N -0.413 5.413 13 C 0.392 3.608 14 O -0.482 6.482 15 N -0.383 5.383 16 C 0.145 3.855 17 C -0.580 4.580 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.071 4.071 26 C -0.075 4.075 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.224 0.776 44 H 0.218 0.782 45 H 0.042 0.958 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.060 0.940 49 H 0.098 0.902 50 H 0.059 0.941 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.054 -22.336 5.507 31.869 hybrid contribution 1.333 -0.816 -0.728 1.724 sum -20.721 -23.152 4.779 31.436 Atomic orbital electron populations 1.21935 0.94981 1.01963 1.02519 1.22073 0.95791 0.89017 1.00812 1.62252 1.04200 1.10810 1.49487 1.22153 0.87881 0.96702 1.00291 1.22204 0.98571 0.92620 0.93904 1.62079 1.03733 1.11053 1.49219 1.22045 0.96467 0.88718 0.99312 1.21323 0.96286 0.96255 0.97640 0.90719 1.21703 1.01298 1.01983 0.94359 1.21025 0.82925 0.95503 0.98458 1.45123 1.17629 1.10526 1.68044 1.16155 0.81725 0.83256 0.79681 1.90865 1.70257 1.33036 1.54049 1.45704 1.14643 1.14604 1.63305 1.18967 0.89430 0.79630 0.97425 1.21235 0.99947 0.95773 1.41022 0.91967 1.24946 0.98820 0.94854 0.95420 1.69980 1.36360 1.00254 1.45714 0.86414 0.83015 0.78083 0.79357 1.20507 1.21034 1.19810 1.22175 0.88240 0.96310 1.00421 1.22265 0.98555 0.92910 0.93812 0.92154 0.91775 0.92306 0.94872 0.90703 0.93930 0.90396 0.89967 0.93916 0.90421 0.94050 0.92939 0.93101 0.91649 0.92014 0.92288 0.77620 0.78235 0.95787 0.95780 0.92499 0.93998 0.90210 0.94053 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 9.18 37.16 0.34 -0.44 16 2 C 0.05 0.31 6.00 -3.82 -0.02 0.28 16 3 N -0.54 -4.03 4.86 -234.46 -1.14 -5.17 16 4 C 0.06 0.42 5.58 -3.77 -0.02 0.40 16 5 C 0.06 0.44 5.43 -3.77 -0.02 0.42 16 6 N -0.54 -4.38 4.05 -234.47 -0.95 -5.33 16 7 C 0.06 0.54 4.40 -3.83 -0.02 0.53 16 8 C -0.10 -0.90 2.47 -90.62 -0.22 -1.13 16 9 H 0.07 0.69 6.77 -51.93 -0.35 0.34 16 10 C -0.14 -1.27 8.95 37.16 0.33 -0.94 16 11 C 0.15 1.91 5.06 -4.04 -0.02 1.89 16 12 N -0.76 -11.51 5.29 -65.23 -0.35 -11.86 16 13 C 0.69 14.71 8.57 -86.92 -0.74 13.97 16 14 O -0.60 -15.54 16.34 5.29 0.09 -15.45 16 15 N -0.73 -16.04 5.55 -66.42 -0.37 -16.41 16 16 C 0.27 7.30 5.43 -5.20 -0.03 7.27 16 17 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 18 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 21 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 25 C 0.06 0.42 5.57 -3.77 -0.02 0.40 16 26 C 0.05 0.37 4.93 -3.77 -0.02 0.35 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.29 6.26 -51.93 -0.33 -0.04 16 30 H 0.03 0.20 8.08 -51.93 -0.42 -0.21 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.63 6.73 -51.93 -0.35 0.28 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.65 7.84 -51.93 -0.41 0.25 16 37 H 0.04 0.37 7.99 -51.93 -0.42 -0.04 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.49 7.19 -51.93 -0.37 0.11 16 40 H 0.06 0.60 7.71 -51.93 -0.40 0.20 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.39 4.82 7.67 -40.82 -0.31 4.51 16 44 H 0.39 7.23 8.34 -40.82 -0.34 6.89 16 45 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.08 0.54 8.00 -51.93 -0.42 0.12 16 50 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 51 H 0.08 0.50 5.99 -51.93 -0.31 0.19 16 LS Contribution 396.85 15.07 5.98 5.98 Total: -1.00 -33.20 396.85 -11.35 -44.55 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -9.45 Total: 3.96 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -0.88 Total: 9.40 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -2.07 Total: -64.49 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.09 Total: -15.45 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.20 -11.35 -44.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426434234.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.139 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds