Wall clock time and date at job start Fri Apr 10 2020 18:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46904 * 109.46724 * 2 1 4 4 C 1.46959 * 110.99621 * 189.99746 * 3 2 1 5 5 C 1.53051 * 109.36476 * 183.18566 * 4 3 2 6 6 N 1.46959 * 109.36681 * 301.60357 * 5 4 3 7 7 C 1.46897 * 110.99898 * 183.18728 * 6 5 4 8 8 C 1.52998 * 109.47349 * 75.79108 * 7 6 5 9 9 H 1.09006 * 109.47221 * 303.98860 * 8 7 6 10 10 C 1.53001 * 109.47293 * 63.98735 * 8 7 6 11 11 C 1.52999 * 109.47350 * 183.98963 * 8 7 6 12 12 N 1.46500 * 109.47156 * 175.00031 * 11 8 7 13 13 C 1.34778 * 119.99948 * 179.97438 * 12 11 8 14 14 O 1.21582 * 119.99711 * 359.97438 * 13 12 11 15 15 N 1.34772 * 119.99976 * 179.97438 * 13 12 11 16 16 C 1.46502 * 120.00206 * 179.97438 * 15 13 12 17 17 C 1.50693 * 109.47486 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00105 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00129 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00285 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00006 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46818 * 90.00500 * 21 19 17 23 23 H 1.48503 * 109.47137 * 209.99956 * 21 19 17 24 24 H 1.48498 * 109.47125 * 330.00493 * 21 19 17 25 25 C 1.46955 * 110.87957 * 59.31754 * 6 5 4 26 26 C 1.46949 * 111.00094 * 313.79533 * 3 2 1 27 27 H 1.08995 * 109.46704 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47165 * 300.00332 * 1 2 3 29 29 H 1.09001 * 109.46969 * 60.00043 * 1 2 3 30 30 H 1.08994 * 109.47537 * 240.00162 * 2 1 3 31 31 H 1.08998 * 109.47419 * 119.99713 * 2 1 3 32 32 H 1.09007 * 109.49037 * 63.21953 * 4 3 2 33 33 H 1.08995 * 109.49465 * 303.15726 * 4 3 2 34 34 H 1.08997 * 109.48945 * 181.62942 * 5 4 3 35 35 H 1.09003 * 109.48440 * 61.56955 * 5 4 3 36 36 H 1.09005 * 109.46867 * 195.78928 * 7 6 5 37 37 H 1.08996 * 109.47029 * 315.79207 * 7 6 5 38 38 H 1.08999 * 109.47136 * 60.24559 * 10 8 7 39 39 H 1.09000 * 109.47319 * 180.24318 * 10 8 7 40 40 H 1.08997 * 109.46999 * 300.24562 * 10 8 7 41 41 H 1.08997 * 109.47134 * 294.99833 * 11 8 7 42 42 H 1.08997 * 109.47053 * 54.99938 * 11 8 7 43 43 H 0.96998 * 120.00068 * 359.97438 * 12 11 8 44 44 H 0.97003 * 120.00031 * 0.02562 * 15 13 12 45 45 H 1.09003 * 109.47212 * 300.00314 * 16 15 13 46 46 H 1.09004 * 109.47012 * 59.99788 * 16 15 13 47 47 H 0.96993 * 120.00500 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.49181 * 60.64919 * 25 6 5 49 49 H 1.08996 * 109.48432 * 180.71515 * 25 6 5 50 50 H 1.09003 * 109.49281 * 296.78125 * 26 3 2 51 51 H 1.09001 * 109.49030 * 56.85215 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4691 1.4312 -0.2382 5 6 3.9516 2.8811 -0.1517 6 7 3.2319 3.6941 -1.1420 7 6 3.7216 5.0791 -1.1420 8 6 5.0742 5.1418 -1.8543 9 1 5.7686 4.4503 -1.3771 10 6 4.8956 4.7527 -3.3232 11 6 5.6308 6.5644 -1.7676 12 7 6.9772 6.5979 -2.3439 13 6 7.6675 7.7550 -2.3770 14 8 7.1725 8.7711 -1.9290 15 7 8.9063 7.7858 -2.9067 16 6 9.6565 9.0436 -2.9432 17 6 11.0015 8.8082 -3.5807 18 1 11.2705 7.8205 -3.9247 19 6 11.8882 9.8540 -3.7257 20 7 11.5604 11.0570 -3.3073 21 14 13.5558 9.5620 -4.5153 22 1 13.4527 9.7723 -5.9817 23 1 14.5456 10.5122 -3.9473 24 1 13.9945 8.1693 -4.2446 25 6 1.7825 3.6479 -0.9037 26 6 1.3000 2.1980 -0.9902 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.6876 1.0337 -1.2294 33 1 3.9807 0.8321 0.5150 34 1 5.0214 2.9211 -0.3567 35 1 3.7578 3.2698 0.8480 36 1 3.0070 5.7171 -1.6622 37 1 3.8358 5.4241 -0.1144 38 1 4.2046 5.4468 -3.8015 39 1 5.8600 4.7932 -3.8296 40 1 4.4950 3.7409 -3.3848 41 1 4.9817 7.2428 -2.3211 42 1 5.6746 6.8743 -0.7236 43 1 7.3720 5.7873 -2.7017 44 1 9.3011 6.9751 -3.2645 45 1 9.1027 9.7802 -3.5255 46 1 9.7952 9.4135 -1.9273 47 1 12.1843 11.7926 -3.4090 48 1 1.5640 4.0454 0.0874 49 1 1.2710 4.2470 -1.6570 50 1 1.4938 1.8093 -1.9900 51 1 0.2301 2.1581 -0.7852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426434234.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:38 Heat of formation + Delta-G solvation = -55.953429 kcal Electronic energy + Delta-G solvation = -25933.940210 eV Core-core repulsion = 22287.752712 eV Total energy + Delta-G solvation = -3646.187498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.227 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.95354 -40.41588 -38.15649 -36.39459 -35.92822 -34.42023 -33.51129 -32.18521 -31.14948 -29.33033 -27.99915 -27.18413 -25.34018 -24.54598 -24.10313 -22.56354 -21.85042 -21.07049 -20.63881 -19.66659 -18.04185 -17.68591 -17.14718 -16.76035 -16.44544 -16.23516 -16.06618 -15.77074 -15.72768 -15.50830 -15.32699 -14.95007 -14.83843 -14.46302 -14.04471 -13.99758 -13.74663 -13.48027 -13.36549 -13.21123 -12.88453 -12.71288 -12.69545 -12.56944 -12.24445 -12.20999 -12.16610 -11.99703 -11.91906 -11.72488 -11.57465 -11.45944 -11.39281 -11.18410 -10.79034 -10.24365 -9.55349 -9.38354 -9.20629 -8.26894 -6.43420 1.44433 1.47379 1.58326 1.90801 2.27308 2.40832 2.87445 2.96063 3.08001 3.58876 3.81697 3.88214 4.00373 4.05313 4.05740 4.19522 4.26586 4.36612 4.45252 4.49324 4.52326 4.58710 4.61105 4.62743 4.76323 4.83156 4.84089 4.93489 4.94215 4.96087 5.02442 5.09070 5.12319 5.15434 5.17429 5.28739 5.30800 5.31609 5.48628 5.50751 5.59287 5.70384 5.86843 5.98190 6.01502 6.18218 6.19747 6.29543 6.68520 7.26027 7.34293 7.75268 8.85482 Molecular weight = 312.23amu Principal moments of inertia in cm(-1) A = 0.037885 B = 0.001816 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.911100 B =15412.187453 C =15788.436889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 N -0.553 5.553 4 C 0.061 3.939 5 C 0.056 3.944 6 N -0.537 5.537 7 C 0.067 3.933 8 C -0.079 4.079 9 H 0.084 0.916 10 C -0.131 4.131 11 C 0.146 3.854 12 N -0.729 5.729 13 C 0.690 3.310 14 O -0.652 6.652 15 N -0.723 5.723 16 C 0.285 3.715 17 C -0.555 4.555 18 H 0.084 0.916 19 C 0.004 3.996 20 N -0.931 5.931 21 Si 0.987 3.013 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.256 1.256 25 C 0.057 3.943 26 C 0.057 3.943 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.032 0.968 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.033 0.967 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.409 0.591 44 H 0.405 0.595 45 H -0.015 1.015 46 H -0.015 1.015 47 H 0.269 0.731 48 H 0.034 0.966 49 H 0.088 0.912 50 H 0.036 0.964 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.344 -26.132 4.254 34.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.077 4.077 3 N -0.279 5.279 4 C -0.067 4.067 5 C -0.072 4.072 6 N -0.261 5.261 7 C -0.062 4.062 8 C -0.099 4.099 9 H 0.102 0.898 10 C -0.188 4.188 11 C 0.021 3.979 12 N -0.387 5.387 13 C 0.389 3.611 14 O -0.535 6.535 15 N -0.377 5.377 16 C 0.161 3.839 17 C -0.593 4.593 18 H 0.102 0.898 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.810 3.190 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.179 1.179 25 C -0.071 4.071 26 C -0.071 4.071 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.051 0.949 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.246 0.754 44 H 0.240 0.760 45 H 0.003 0.997 46 H 0.003 0.997 47 H 0.077 0.923 48 H 0.052 0.948 49 H 0.106 0.894 50 H 0.054 0.946 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.744 -25.044 4.681 33.495 hybrid contribution 1.119 -0.028 -0.424 1.197 sum -20.625 -25.072 4.256 32.743 Atomic orbital electron populations 1.21901 0.94153 1.02620 1.02307 1.22115 0.96488 0.88275 1.00869 1.62280 1.04275 1.11661 1.49670 1.22126 0.88068 0.96287 1.00257 1.22214 0.98793 0.92925 0.93294 1.62085 1.04216 1.10518 1.49316 1.21967 0.95982 0.89281 0.98964 1.21177 0.96774 0.93670 0.98246 0.89778 1.21656 1.01193 1.02167 0.93785 1.21181 0.81416 0.97858 0.97475 1.44889 1.17842 1.09243 1.66686 1.16337 0.81508 0.84103 0.79112 1.90833 1.71236 1.35409 1.55978 1.45288 1.14893 1.13684 1.63855 1.18409 0.90046 0.80980 0.94447 1.21608 0.99815 0.96917 1.40966 0.89794 1.26072 1.03512 0.94310 0.95707 1.70146 1.38200 1.01539 1.47055 0.85127 0.76949 0.78686 0.78238 1.19611 1.20964 1.17943 1.22214 0.87809 0.96875 1.00251 1.22244 0.99093 0.92379 0.93414 0.91115 0.92241 0.92182 0.94951 0.90467 0.94395 0.89661 0.89590 0.94864 0.90142 0.94468 0.93402 0.93135 0.91008 0.92987 0.93220 0.75385 0.76022 0.99712 0.99693 0.92263 0.94756 0.89418 0.94613 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.18 71.98 0.66 -0.62 16 2 C 0.05 0.54 6.00 86.30 0.52 1.05 16 3 N -0.55 -7.51 4.86 -895.70 -4.35 -11.86 16 4 C 0.06 0.81 5.58 86.31 0.48 1.29 16 5 C 0.06 0.81 5.43 86.31 0.47 1.28 16 6 N -0.54 -7.99 4.05 -895.72 -3.62 -11.61 16 7 C 0.07 1.06 4.40 86.30 0.38 1.44 16 8 C -0.08 -1.37 2.47 -10.79 -0.03 -1.40 16 9 H 0.08 1.35 6.77 -2.38 -0.02 1.34 16 10 C -0.13 -2.17 8.95 71.98 0.64 -1.53 16 11 C 0.15 3.70 5.06 86.38 0.44 4.14 16 12 N -0.73 -21.47 5.29 -478.55 -2.53 -24.00 16 13 C 0.69 29.56 8.57 179.06 1.53 31.09 16 14 O -0.65 -34.71 16.34 -3.97 -0.06 -34.78 16 15 N -0.72 -31.91 5.55 -482.31 -2.68 -34.59 16 16 C 0.28 16.11 5.43 85.63 0.46 16.57 16 17 C -0.56 -30.66 9.28 25.60 0.24 -30.42 16 18 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 19 C 0.00 0.20 5.46 84.65 0.46 0.66 16 20 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 21 Si 0.99 42.61 29.54 68.60 2.03 44.64 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 25 C 0.06 0.77 5.57 86.31 0.48 1.25 16 26 C 0.06 0.71 4.93 86.31 0.43 1.14 16 27 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.49 6.26 -2.39 -0.01 0.47 16 30 H 0.03 0.35 8.08 -2.39 -0.02 0.34 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.16 6.73 -2.39 -0.02 1.15 16 35 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 1.26 7.84 -2.38 -0.02 1.24 16 37 H 0.04 0.64 7.99 -2.39 -0.02 0.62 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.05 0.85 7.19 -2.39 -0.02 0.83 16 40 H 0.07 1.15 7.71 -2.39 -0.02 1.13 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.41 9.19 7.67 -92.71 -0.71 8.48 16 44 H 0.40 14.62 8.34 -92.71 -0.77 13.85 16 45 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 46 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 47 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 48 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.09 1.05 8.00 -2.39 -0.02 1.03 16 50 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 51 H 0.09 0.98 5.99 -2.39 -0.01 0.96 16 Total: -1.00 -73.45 396.85 -4.35 -77.80 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.58 Total: 24.96 kcal Atomic # 6 Polarization: 18.78 SS G_CDS: 7.17 Total: 25.94 kcal Atomic # 7 Polarization: -125.66 SS G_CDS: -12.90 Total: -138.56 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.06 Total: -34.78 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -73.45 -4.35 -77.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426434234.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.846 kcal (2) G-P(sol) polarization free energy of solvation -73.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds