Wall clock time and date at job start Fri Apr 10 2020 18:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47523 * 2 1 4 4 C 1.46498 * 119.99835 * 274.98218 * 3 2 1 5 5 C 1.53004 * 109.47171 * 293.10046 * 4 3 2 6 6 C 1.34778 * 120.00318 * 94.97717 * 3 2 1 7 7 O 1.21589 * 119.99742 * 340.30476 * 6 3 2 8 8 N 1.34770 * 120.00144 * 160.30181 * 6 3 2 9 9 C 1.46961 * 120.59339 * 164.10236 * 8 6 3 10 10 C 1.53374 * 108.63312 * 235.24546 * 9 8 6 11 11 N 1.46953 * 108.63920 * 310.57889 * 10 9 8 12 12 C 1.34782 * 120.59420 * 235.20194 * 11 10 9 13 13 O 1.21580 * 120.00098 * 5.26964 * 12 11 10 14 14 N 1.34782 * 119.99946 * 184.98965 * 12 11 10 15 15 C 1.46498 * 119.99976 * 175.28526 * 14 12 11 16 16 C 1.50695 * 109.47038 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00107 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00099 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99647 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00209 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47004 * 60.00430 * 20 18 16 22 22 H 1.48503 * 109.46959 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47352 * 300.00258 * 20 18 16 24 24 C 1.46968 * 118.81392 * 55.47758 * 11 10 9 25 25 C 1.46966 * 120.59421 * 344.12506 * 8 6 3 26 26 H 1.08997 * 109.46839 * 60.00123 * 1 2 3 27 27 H 1.08994 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47073 * 300.00671 * 1 2 3 29 29 H 1.08997 * 109.47258 * 239.99840 * 2 1 3 30 30 H 1.09005 * 109.47026 * 119.99551 * 2 1 3 31 31 H 1.09003 * 109.47413 * 53.10027 * 4 3 2 32 32 H 1.08992 * 109.47321 * 173.10066 * 4 3 2 33 33 H 1.09004 * 109.46679 * 60.00042 * 5 4 3 34 34 H 1.08998 * 109.47063 * 180.02562 * 5 4 3 35 35 H 1.08994 * 109.47162 * 300.00267 * 5 4 3 36 36 H 1.09003 * 109.60762 * 115.50984 * 9 8 6 37 37 H 1.09000 * 109.75537 * 355.07743 * 9 8 6 38 38 H 1.09001 * 109.60602 * 190.82792 * 10 9 8 39 39 H 1.08999 * 109.74709 * 70.41048 * 10 9 8 40 40 H 0.97005 * 119.99490 * 355.29302 * 14 12 11 41 41 H 1.08994 * 109.47272 * 300.00981 * 15 14 12 42 42 H 1.09001 * 109.46516 * 60.00373 * 15 14 12 43 43 H 0.96998 * 119.99492 * 180.02562 * 19 18 16 44 44 H 1.08993 * 109.60810 * 64.26212 * 24 11 10 45 45 H 1.09001 * 109.60890 * 184.77865 * 24 11 10 46 46 H 1.09000 * 109.60987 * 244.49500 * 25 8 6 47 47 H 1.09004 * 109.60942 * 4.83355 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1587 2.1085 -1.2639 5 6 3.2672 1.4671 -2.1011 6 6 2.3386 1.9828 1.1628 7 8 1.9040 1.5483 2.2119 8 7 3.1405 3.0660 1.1626 9 6 3.2238 3.9351 2.3448 10 6 2.8995 5.3727 1.9200 11 7 3.7058 5.7062 0.7375 12 6 4.5071 6.7900 0.7370 13 8 4.6414 7.4472 1.7510 14 7 5.1639 7.1420 -0.3861 15 6 5.9524 8.3763 -0.4172 16 6 6.5812 8.5365 -1.7773 17 1 6.4102 7.7935 -2.5422 18 6 7.3739 9.6322 -2.0455 19 7 7.5817 10.5373 -1.1142 20 14 8.1528 9.8312 -3.7317 21 1 7.0876 9.8978 -4.7642 22 1 8.9522 11.0824 -3.7631 23 1 9.0382 8.6716 -4.0079 24 6 3.6183 4.8403 -0.4467 25 6 3.9469 3.3995 -0.0199 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.2182 2.0670 -1.8134 32 1 2.4139 3.1480 -1.0586 33 1 3.0119 0.4274 -2.3065 34 1 3.3719 2.0085 -3.0413 35 1 4.2076 1.5085 -1.5517 36 1 4.2315 3.8944 2.7584 37 1 2.5063 3.6050 3.0961 38 1 3.1413 6.0576 2.7327 39 1 1.8405 5.4545 1.6755 40 1 5.1143 6.5780 -1.1738 41 1 5.3028 9.2276 -0.2141 42 1 6.7343 8.3270 0.3407 43 1 8.1391 11.3084 -1.3031 44 1 2.6092 4.8821 -0.8566 45 1 4.3349 5.1735 -1.1974 46 1 5.0060 3.3207 0.2254 47 1 3.7073 2.7126 -0.8317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426449494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:36 Heat of formation + Delta-G solvation = 11.114329 kcal Electronic energy + Delta-G solvation = -27386.500763 eV Core-core repulsion = 23607.388447 eV Total energy + Delta-G solvation = -3779.112316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.28109 -39.51277 -37.12223 -36.88017 -34.34527 -34.00302 -32.82186 -32.19437 -30.81580 -30.20135 -27.83907 -26.57805 -24.37034 -24.04054 -23.37659 -22.67764 -21.55784 -20.12549 -18.97853 -18.20082 -17.26779 -17.06049 -16.17459 -16.01596 -15.75099 -15.64212 -15.04978 -14.89730 -14.70169 -14.48784 -14.04507 -13.80421 -13.66299 -13.32017 -13.15519 -12.98656 -12.74321 -12.45612 -12.27770 -12.08320 -11.97638 -11.80579 -11.59814 -11.53085 -11.30278 -11.22292 -10.98706 -10.95434 -10.89844 -10.31628 -10.13468 -9.45019 -9.40537 -9.24186 -8.90019 -8.75496 -8.27074 -7.76497 -6.17771 -4.24878 2.30922 2.86754 3.06618 3.23182 3.28533 3.29855 3.46312 3.82053 4.25532 4.34635 4.48872 4.63336 4.64440 4.71038 4.87085 4.90731 4.99354 5.02133 5.06530 5.14817 5.18166 5.21426 5.26310 5.31977 5.35610 5.49585 5.52292 5.63054 5.64077 5.76252 5.79127 5.93860 5.97149 6.18441 6.41549 6.63215 6.70285 7.05853 7.45658 7.48559 7.54198 7.64130 7.80688 7.98637 8.34401 8.70686 8.84579 9.25857 9.43577 10.92391 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.003078 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.836782 B = 9094.422321 C =10190.423396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.131 3.869 3 N -0.633 5.633 4 C 0.075 3.925 5 C -0.186 4.186 6 C 0.713 3.287 7 O -0.584 6.584 8 N -0.624 5.624 9 C 0.116 3.884 10 C 0.117 3.883 11 N -0.637 5.637 12 C 0.697 3.303 13 O -0.594 6.594 14 N -0.728 5.728 15 C 0.266 3.734 16 C -0.543 4.543 17 H 0.061 0.939 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.096 3.904 25 C 0.036 3.964 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.384 0.616 41 H 0.024 0.976 42 H 0.026 0.974 43 H 0.267 0.733 44 H 0.069 0.931 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.976 -21.069 -3.022 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.008 3.992 3 N -0.372 5.372 4 C -0.048 4.048 5 C -0.244 4.244 6 C 0.416 3.584 7 O -0.461 6.461 8 N -0.362 5.362 9 C -0.008 4.008 10 C -0.008 4.008 11 N -0.377 5.377 12 C 0.399 3.601 13 O -0.473 6.473 14 N -0.382 5.382 15 C 0.145 3.855 16 C -0.582 4.582 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.029 4.029 25 C -0.087 4.087 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.219 0.781 41 H 0.042 0.958 42 H 0.044 0.956 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.112 0.888 46 H 0.091 0.909 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.981 -20.564 -1.647 23.857 hybrid contribution 0.506 -0.011 -1.471 1.556 sum -11.475 -20.575 -3.119 23.764 Atomic orbital electron populations 1.22128 0.96085 1.01906 1.02476 1.21248 0.94353 0.81007 1.02590 1.47125 1.69768 1.15094 1.05170 1.22293 0.99380 0.98171 0.84908 1.22419 0.99030 1.02299 1.00663 1.15895 0.78895 0.79856 0.83755 1.90893 1.58969 1.65493 1.30767 1.47179 1.44728 1.27840 1.16409 1.21948 1.03185 0.88608 0.87015 1.21783 0.94216 0.95447 0.89349 1.47207 1.47573 1.27731 1.15238 1.16067 0.78997 0.80275 0.84787 1.90868 1.68609 1.55301 1.32522 1.45884 1.52249 1.28054 1.12059 1.18992 0.89788 0.79478 0.97194 1.21157 1.31350 1.08225 0.97429 0.92078 1.24944 0.96085 0.95400 0.97547 1.69969 1.37756 1.11249 1.33197 0.86475 0.79268 0.77612 0.83529 1.20082 1.21070 1.20083 1.22081 1.02139 0.89789 0.88889 1.23676 0.96357 0.97990 0.90642 0.92786 0.91872 0.91885 0.90891 0.90188 0.90946 0.87396 0.91519 0.90464 0.91089 0.90998 0.88234 0.87552 0.91903 0.78088 0.95798 0.95637 0.92365 0.91253 0.88768 0.90941 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.24 37.16 0.38 -0.86 16 2 C 0.13 1.03 5.99 -4.04 -0.02 1.00 16 3 N -0.63 -5.85 2.52 -192.81 -0.49 -6.34 16 4 C 0.07 0.49 5.57 -4.04 -0.02 0.47 16 5 C -0.19 -0.92 9.13 37.16 0.34 -0.58 16 6 C 0.71 8.97 7.83 -86.92 -0.68 8.29 16 7 O -0.58 -9.35 15.73 5.29 0.08 -9.26 16 8 N -0.62 -7.29 2.86 -177.94 -0.51 -7.80 16 9 C 0.12 1.44 6.54 -3.60 -0.02 1.42 16 10 C 0.12 1.57 6.60 -3.60 -0.02 1.55 16 11 N -0.64 -9.61 2.94 -177.94 -0.52 -10.14 16 12 C 0.70 14.22 8.29 -86.91 -0.72 13.50 16 13 O -0.59 -14.66 15.76 5.29 0.08 -14.57 16 14 N -0.73 -15.21 5.46 -66.42 -0.36 -15.57 16 15 C 0.27 7.01 5.43 -5.20 -0.03 6.98 16 16 C -0.54 -14.43 9.28 -34.44 -0.32 -14.75 16 17 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.80 13.29 55.43 0.74 -25.07 16 20 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 24 C 0.10 1.04 6.14 -3.36 -0.02 1.02 16 25 C 0.04 0.35 5.49 -3.36 -0.02 0.33 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.40 6.81 -51.93 -0.35 0.05 16 30 H 0.08 0.74 7.61 -51.93 -0.40 0.35 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 0.77 2.92 -51.93 -0.15 0.62 16 33 H 0.07 0.30 6.95 -51.93 -0.36 -0.06 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.40 6.67 -51.93 -0.35 0.05 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 1.23 7.16 -51.93 -0.37 0.86 16 38 H 0.11 1.60 6.99 -51.93 -0.36 1.23 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.38 6.75 5.79 -40.82 -0.24 6.52 16 41 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.07 0.65 6.93 -51.93 -0.36 0.29 16 45 H 0.09 0.98 5.61 -51.93 -0.29 0.68 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.14 1.04 1.03 -68.65 -0.07 0.97 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -34.99 363.18 -8.85 -43.84 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.06 Total: 4.01 kcal Atomic # 6 Polarization: 21.30 SS G_CDS: -1.26 Total: 20.04 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -1.15 Total: -64.92 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.17 Total: -23.84 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.99 -8.85 -43.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426449494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.955 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds