Wall clock time and date at job start Fri Apr 10 2020 18:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47523 * 2 1 4 4 C 1.46498 * 119.99835 * 274.98218 * 3 2 1 5 5 C 1.53004 * 109.47171 * 293.10046 * 4 3 2 6 6 C 1.34778 * 120.00318 * 94.97717 * 3 2 1 7 7 O 1.21589 * 119.99742 * 340.30476 * 6 3 2 8 8 N 1.34770 * 120.00144 * 160.30181 * 6 3 2 9 9 C 1.46961 * 120.59339 * 164.10236 * 8 6 3 10 10 C 1.53374 * 108.63312 * 235.24546 * 9 8 6 11 11 N 1.46953 * 108.63920 * 310.57889 * 10 9 8 12 12 C 1.34782 * 120.59420 * 235.20194 * 11 10 9 13 13 O 1.21580 * 120.00098 * 5.26964 * 12 11 10 14 14 N 1.34782 * 119.99946 * 184.98965 * 12 11 10 15 15 C 1.46498 * 119.99976 * 175.28526 * 14 12 11 16 16 C 1.50695 * 109.47038 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00107 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00099 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99647 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00209 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47004 * 60.00430 * 20 18 16 22 22 H 1.48503 * 109.46959 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47352 * 300.00258 * 20 18 16 24 24 C 1.46968 * 118.81392 * 55.47758 * 11 10 9 25 25 C 1.46966 * 120.59421 * 344.12506 * 8 6 3 26 26 H 1.08997 * 109.46839 * 60.00123 * 1 2 3 27 27 H 1.08994 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47073 * 300.00671 * 1 2 3 29 29 H 1.08997 * 109.47258 * 239.99840 * 2 1 3 30 30 H 1.09005 * 109.47026 * 119.99551 * 2 1 3 31 31 H 1.09003 * 109.47413 * 53.10027 * 4 3 2 32 32 H 1.08992 * 109.47321 * 173.10066 * 4 3 2 33 33 H 1.09004 * 109.46679 * 60.00042 * 5 4 3 34 34 H 1.08998 * 109.47063 * 180.02562 * 5 4 3 35 35 H 1.08994 * 109.47162 * 300.00267 * 5 4 3 36 36 H 1.09003 * 109.60762 * 115.50984 * 9 8 6 37 37 H 1.09000 * 109.75537 * 355.07743 * 9 8 6 38 38 H 1.09001 * 109.60602 * 190.82792 * 10 9 8 39 39 H 1.08999 * 109.74709 * 70.41048 * 10 9 8 40 40 H 0.97005 * 119.99490 * 355.29302 * 14 12 11 41 41 H 1.08994 * 109.47272 * 300.00981 * 15 14 12 42 42 H 1.09001 * 109.46516 * 60.00373 * 15 14 12 43 43 H 0.96998 * 119.99492 * 180.02562 * 19 18 16 44 44 H 1.08993 * 109.60810 * 64.26212 * 24 11 10 45 45 H 1.09001 * 109.60890 * 184.77865 * 24 11 10 46 46 H 1.09000 * 109.60987 * 244.49500 * 25 8 6 47 47 H 1.09004 * 109.60942 * 4.83355 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1587 2.1085 -1.2639 5 6 3.2672 1.4671 -2.1011 6 6 2.3386 1.9828 1.1628 7 8 1.9040 1.5483 2.2119 8 7 3.1405 3.0660 1.1626 9 6 3.2238 3.9351 2.3448 10 6 2.8995 5.3727 1.9200 11 7 3.7058 5.7062 0.7375 12 6 4.5071 6.7900 0.7370 13 8 4.6414 7.4472 1.7510 14 7 5.1639 7.1420 -0.3861 15 6 5.9524 8.3763 -0.4172 16 6 6.5812 8.5365 -1.7773 17 1 6.4102 7.7935 -2.5422 18 6 7.3739 9.6322 -2.0455 19 7 7.5817 10.5373 -1.1142 20 14 8.1528 9.8312 -3.7317 21 1 7.0876 9.8978 -4.7642 22 1 8.9522 11.0824 -3.7631 23 1 9.0382 8.6716 -4.0079 24 6 3.6183 4.8403 -0.4467 25 6 3.9469 3.3995 -0.0199 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.2182 2.0670 -1.8134 32 1 2.4139 3.1480 -1.0586 33 1 3.0119 0.4274 -2.3065 34 1 3.3719 2.0085 -3.0413 35 1 4.2076 1.5085 -1.5517 36 1 4.2315 3.8944 2.7584 37 1 2.5063 3.6050 3.0961 38 1 3.1413 6.0576 2.7327 39 1 1.8405 5.4545 1.6755 40 1 5.1143 6.5780 -1.1738 41 1 5.3028 9.2276 -0.2141 42 1 6.7343 8.3270 0.3407 43 1 8.1391 11.3084 -1.3031 44 1 2.6092 4.8821 -0.8566 45 1 4.3349 5.1735 -1.1974 46 1 5.0060 3.3207 0.2254 47 1 3.7073 2.7126 -0.8317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426449494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:35 Heat of formation + Delta-G solvation = -13.418339 kcal Electronic energy + Delta-G solvation = -27387.564579 eV Core-core repulsion = 23607.388447 eV Total energy + Delta-G solvation = -3780.176132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.22713 -40.95153 -38.33466 -37.70107 -36.22095 -35.22897 -34.35360 -33.38433 -31.72537 -30.97200 -29.45378 -27.98162 -25.37202 -24.78460 -24.59310 -24.01287 -22.69704 -21.29405 -20.46538 -19.22405 -18.44539 -17.92691 -17.83997 -17.41887 -16.84655 -16.75944 -16.50431 -16.02114 -15.83134 -15.50752 -15.28392 -14.89384 -14.79761 -14.58506 -14.32819 -14.03539 -13.83476 -13.65076 -13.41195 -13.20537 -12.96502 -12.90022 -12.68017 -12.64860 -12.60197 -12.37515 -12.18211 -12.08806 -11.82417 -11.77537 -11.47240 -11.17988 -11.05619 -10.76835 -10.38385 -9.93997 -9.63709 -9.18545 -8.25538 -6.42256 1.37877 1.46711 1.50663 1.58658 1.79647 1.92226 2.18776 2.40957 2.66306 3.09672 3.10152 3.67912 3.78069 3.81040 4.05614 4.11467 4.13237 4.18318 4.25415 4.39446 4.43686 4.47099 4.53454 4.59343 4.65134 4.73714 4.81123 4.88021 4.90628 5.03027 5.06463 5.08522 5.29039 5.31150 5.32719 5.42151 5.46821 5.51366 5.64041 5.70440 5.85023 5.87481 6.07704 6.68941 6.78424 7.15533 7.27886 7.41049 7.67043 8.86601 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.003078 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.836782 B = 9094.422321 C =10190.423396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.127 3.873 3 N -0.628 5.628 4 C 0.069 3.931 5 C -0.184 4.184 6 C 0.707 3.293 7 O -0.626 6.626 8 N -0.625 5.625 9 C 0.125 3.875 10 C 0.120 3.880 11 N -0.627 5.627 12 C 0.694 3.306 13 O -0.645 6.645 14 N -0.720 5.720 15 C 0.286 3.714 16 C -0.553 4.553 17 H 0.087 0.913 18 C 0.003 3.997 19 N -0.932 5.932 20 Si 0.986 3.014 21 H -0.260 1.260 22 H -0.289 1.289 23 H -0.261 1.261 24 C 0.090 3.910 25 C 0.042 3.958 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.032 0.968 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.404 0.596 41 H -0.015 1.015 42 H -0.016 1.016 43 H 0.268 0.732 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.065 0.935 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.498 -23.248 -6.786 27.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.005 3.995 3 N -0.365 5.365 4 C -0.052 4.052 5 C -0.242 4.242 6 C 0.410 3.590 7 O -0.506 6.506 8 N -0.362 5.362 9 C 0.001 3.999 10 C -0.005 4.005 11 N -0.365 5.365 12 C 0.396 3.604 13 O -0.527 6.527 14 N -0.376 5.376 15 C 0.162 3.838 16 C -0.591 4.591 17 H 0.105 0.895 18 C -0.196 4.196 19 N -0.571 5.571 20 Si 0.809 3.191 21 H -0.184 1.184 22 H -0.215 1.215 23 H -0.185 1.185 24 C -0.033 4.033 25 C -0.080 4.080 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.242 0.758 41 H 0.003 0.997 42 H 0.002 0.998 43 H 0.077 0.923 44 H 0.115 0.885 45 H 0.122 0.878 46 H 0.083 0.917 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.547 -22.836 -5.483 26.626 hybrid contribution 0.583 0.583 -0.256 0.863 sum -11.964 -22.253 -5.738 25.909 Atomic orbital electron populations 1.22071 0.95710 1.02721 1.01477 1.21407 0.94638 0.80302 1.03182 1.47245 1.68712 1.15536 1.05049 1.22490 1.01191 0.97666 0.83882 1.22403 0.97730 1.03124 1.00938 1.16114 0.78828 0.79830 0.84224 1.90865 1.60427 1.66703 1.32621 1.47180 1.44866 1.27566 1.16591 1.21744 1.02623 0.87996 0.87577 1.21841 0.94728 0.95577 0.88310 1.47178 1.45867 1.26404 1.17085 1.16220 0.79273 0.81160 0.83767 1.90833 1.70232 1.57427 1.34227 1.45430 1.51997 1.26915 1.13235 1.18413 0.88383 0.80420 0.96551 1.21556 1.31053 1.08888 0.97588 0.89507 1.26078 0.96553 0.94853 1.02148 1.70148 1.38795 1.12087 1.36031 0.85195 0.78469 0.77649 0.77825 1.18416 1.21471 1.18521 1.22446 1.04146 0.89384 0.87321 1.23839 0.95645 0.97743 0.90764 0.91592 0.90250 0.94904 0.87684 0.92145 0.89098 0.87928 0.90516 0.88524 0.91752 0.91886 0.88296 0.89552 0.90089 0.75823 0.99747 0.99846 0.92316 0.88535 0.87785 0.91690 0.81221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 10.24 71.98 0.74 -1.33 16 2 C 0.13 1.71 5.99 86.38 0.52 2.22 16 3 N -0.63 -10.15 2.52 -882.18 -2.23 -12.37 16 4 C 0.07 0.64 5.57 86.38 0.48 1.12 16 5 C -0.18 -1.00 9.13 71.98 0.66 -0.35 16 6 C 0.71 17.06 7.83 179.06 1.40 18.46 16 7 O -0.63 -20.16 15.73 -3.99 -0.06 -20.23 16 8 N -0.63 -13.88 2.86 -835.13 -2.39 -16.27 16 9 C 0.13 3.11 6.54 86.42 0.56 3.68 16 10 C 0.12 3.22 6.60 86.42 0.57 3.79 16 11 N -0.63 -18.52 2.94 -835.15 -2.46 -20.98 16 12 C 0.69 28.86 8.29 179.05 1.49 30.35 16 13 O -0.64 -33.38 15.76 -3.97 -0.06 -33.44 16 14 N -0.72 -30.22 5.46 -482.31 -2.63 -32.85 16 15 C 0.29 15.58 5.43 85.63 0.47 16.04 16 16 C -0.55 -29.23 9.28 25.60 0.24 -28.99 16 17 H 0.09 4.04 7.60 -2.91 -0.02 4.02 16 18 C 0.00 0.18 5.46 84.65 0.46 0.64 16 19 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 20 Si 0.99 40.99 29.54 68.60 2.03 43.02 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 22 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 24 C 0.09 1.73 6.14 86.57 0.53 2.26 16 25 C 0.04 0.72 5.49 86.57 0.48 1.19 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.11 0.75 6.81 -2.39 -0.02 0.74 16 30 H 0.06 1.07 7.61 -2.38 -0.02 1.05 16 31 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 1.07 2.92 -2.39 -0.01 1.06 16 33 H 0.08 0.32 6.95 -2.38 -0.02 0.31 16 34 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.06 0.47 6.67 -2.39 -0.02 0.46 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.10 2.51 7.16 -2.39 -0.02 2.49 16 38 H 0.09 2.72 6.99 -2.39 -0.02 2.70 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.40 13.52 5.79 -92.70 -0.54 12.99 16 41 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 42 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 43 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 44 H 0.10 1.43 6.93 -2.39 -0.02 1.41 16 45 H 0.10 1.82 5.61 -2.39 -0.01 1.81 16 46 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.17 1.96 1.03 -18.09 -0.02 1.94 16 Total: -1.00 -80.44 363.18 1.50 -78.93 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.44 Total: 20.53 kcal Atomic # 6 Polarization: 40.51 SS G_CDS: 8.58 Total: 49.10 kcal Atomic # 7 Polarization: -128.49 SS G_CDS: -9.42 Total: -137.91 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.13 Total: -53.67 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -80.44 1.50 -78.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426449494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.516 kcal (2) G-P(sol) polarization free energy of solvation -80.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds