Wall clock time and date at job start Fri Apr 10 2020 18:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 119.99982 * 2 1 4 4 N 1.46903 * 109.47310 * 124.99810 * 3 2 1 5 5 C 1.46893 * 111.00152 * 288.18513 * 4 3 2 6 6 C 1.50696 * 109.47168 * 163.54009 * 5 4 3 7 7 H 1.07997 * 120.00497 * 3.24501 * 6 5 4 8 8 C 1.37877 * 120.00133 * 183.24641 * 6 5 4 9 9 N 1.31523 * 119.99878 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00281 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47078 * 90.00124 * 10 8 6 12 12 H 1.48502 * 109.47356 * 209.99681 * 10 8 6 13 13 H 1.48494 * 109.47417 * 330.00125 * 10 8 6 14 14 C 1.46899 * 111.00230 * 164.22629 * 4 3 2 15 15 C 1.53005 * 109.47279 * 293.95954 * 14 4 3 16 16 H 1.08994 * 109.47421 * 59.99427 * 15 14 4 17 17 O 1.42896 * 109.46961 * 299.99544 * 15 14 4 18 18 C 1.53003 * 109.47114 * 179.97438 * 15 14 4 19 19 N 1.46901 * 109.46878 * 180.27703 * 18 15 14 20 20 C 1.47011 * 110.99625 * 198.62463 * 19 18 15 21 21 C 1.53104 * 109.25792 * 177.61014 * 20 19 18 22 22 H 1.08993 * 109.50521 * 176.78392 * 21 20 19 23 23 C 1.53000 * 109.50569 * 296.91338 * 21 20 19 24 24 O 1.43013 * 109.25521 * 56.84781 * 21 20 19 25 25 C 1.43012 * 113.74154 * 301.32898 * 24 21 20 26 26 H 1.09003 * 109.51121 * 298.74036 * 25 24 21 27 27 C 1.52993 * 109.50951 * 178.60634 * 25 24 21 28 28 C 1.47012 * 110.99734 * 74.99179 * 19 18 15 29 29 H 1.08001 * 119.99774 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00059 * 359.72518 * 1 2 3 31 31 H 1.07998 * 120.00352 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47105 * 244.99869 * 3 2 1 33 33 H 1.08997 * 109.47166 * 4.99890 * 3 2 1 34 34 H 1.09007 * 109.47149 * 283.53896 * 5 4 3 35 35 H 1.08997 * 109.47239 * 43.54165 * 5 4 3 36 36 H 0.97000 * 119.99970 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.46923 * 53.95453 * 14 4 3 38 38 H 1.08998 * 109.47226 * 173.95832 * 14 4 3 39 39 H 0.96707 * 113.99936 * 300.00547 * 17 15 14 40 40 H 1.08999 * 109.46912 * 300.28235 * 18 15 14 41 41 H 1.08999 * 109.46702 * 60.28006 * 18 15 14 42 42 H 1.08999 * 109.51044 * 297.54216 * 20 19 18 43 43 H 1.08997 * 109.50847 * 57.67542 * 20 19 18 44 44 H 1.09001 * 109.47141 * 179.77810 * 23 21 20 45 45 H 1.08994 * 109.47058 * 299.78306 * 23 21 20 46 46 H 1.09002 * 109.47070 * 59.78224 * 23 21 20 47 47 H 1.09004 * 109.47745 * 300.21768 * 27 25 24 48 48 H 1.09002 * 109.47211 * 60.21859 * 27 25 24 49 49 H 1.09008 * 109.47590 * 180.21850 * 27 25 24 50 50 H 1.08998 * 109.50673 * 302.32380 * 28 19 18 51 51 H 1.09001 * 109.50900 * 62.45487 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1346 5 6 2.2754 1.4849 2.4053 6 6 3.1845 1.1092 3.5469 7 1 4.2120 0.8394 3.3527 8 6 2.7045 1.1100 4.8394 9 7 1.4533 1.4391 5.0760 10 14 3.8311 0.6436 6.2545 11 1 4.5087 1.8605 6.7695 12 1 3.0305 0.0254 7.3417 13 1 4.8499 -0.3257 5.7774 14 6 3.9986 2.3927 0.9669 15 6 4.8921 2.0655 -0.2313 16 1 4.2817 1.9968 -1.1316 17 8 5.5518 0.8179 -0.0068 18 6 5.9357 3.1706 -0.4062 19 7 6.7893 2.8596 -1.5606 20 6 8.0443 3.6235 -1.5087 21 6 8.9269 3.2259 -2.6949 22 1 9.8336 3.8307 -2.6927 23 6 9.2984 1.7460 -2.5817 24 8 8.2088 3.4463 -3.9119 25 6 6.9814 2.7171 -3.9963 26 1 7.1895 1.6479 -3.9535 27 6 6.2793 3.0494 -5.3144 28 6 6.0791 3.1095 -2.8233 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0045 31 1 1.8500 -0.9353 -0.0004 32 1 2.6213 1.4026 -0.9314 33 1 1.3585 2.1316 0.0895 34 1 1.9572 2.5212 2.5201 35 1 1.4011 0.8340 2.4077 36 1 1.1154 1.4393 5.9853 37 1 3.4954 3.3444 0.7957 38 1 4.6091 2.4613 1.8673 39 1 6.1139 0.8062 0.7800 40 1 5.4321 4.1228 -0.5725 41 1 6.5494 3.2362 0.4922 42 1 7.8238 4.6897 -1.5605 43 1 8.5658 3.4038 -0.5772 44 1 9.9235 1.4626 -3.4285 45 1 9.8456 1.5787 -1.6541 46 1 8.3908 1.1425 -2.5821 47 1 6.0734 4.1190 -5.3569 48 1 6.9221 2.7698 -6.1491 49 1 5.3420 2.4963 -5.3764 50 1 5.1662 2.5147 -2.8514 51 1 5.8272 4.1675 -2.8961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428856843.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:42 Heat of formation + Delta-G solvation = -87.159870 kcal Electronic energy + Delta-G solvation = -27545.363753 eV Core-core repulsion = 23865.530291 eV Total energy + Delta-G solvation = -3679.833462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.05334 -39.52111 -37.63570 -36.04378 -34.96853 -34.31771 -33.90970 -31.74673 -30.55271 -29.15850 -27.85287 -27.37241 -25.91231 -24.47501 -23.47472 -22.40022 -21.86925 -20.59305 -20.39664 -18.52983 -17.64929 -17.51463 -17.22534 -16.88989 -16.72887 -16.20698 -16.02164 -15.65332 -15.57028 -15.47231 -15.03913 -14.83941 -14.70152 -14.13934 -13.98834 -13.91185 -13.44295 -13.27739 -13.24481 -12.87663 -12.81296 -12.80771 -12.68582 -12.61601 -12.49589 -12.44305 -12.21950 -12.06642 -12.01882 -11.80788 -11.63174 -11.27795 -11.22072 -10.82783 -10.59673 -10.39197 -10.16039 -9.28683 -8.95589 -8.16938 -6.26435 1.41418 1.43244 1.44483 1.55150 2.42061 2.62353 2.83007 3.15161 3.33434 3.70513 3.82716 3.88006 3.88865 4.07077 4.10877 4.13013 4.16550 4.26064 4.29322 4.35350 4.41868 4.45777 4.48437 4.61104 4.65689 4.67543 4.70767 4.72299 4.76551 4.83291 4.84599 5.01155 5.04099 5.05281 5.13921 5.17945 5.20721 5.25818 5.33579 5.45239 5.67031 5.75541 5.88563 5.94128 5.99647 6.11936 6.28223 6.40852 6.64453 6.89372 7.07011 7.42873 8.93825 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.003388 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.534596 B = 8263.202724 C = 9615.920404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.141 4.141 3 C 0.079 3.921 4 N -0.525 5.525 5 C 0.211 3.789 6 C -0.515 4.515 7 H 0.065 0.935 8 C 0.000 4.000 9 N -0.937 5.937 10 Si 0.967 3.033 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.263 1.263 14 C 0.034 3.966 15 C 0.137 3.863 16 H 0.088 0.912 17 O -0.548 6.548 18 C 0.031 3.969 19 N -0.526 5.526 20 C 0.024 3.976 21 C 0.088 3.912 22 H 0.119 0.881 23 C -0.169 4.169 24 O -0.394 6.394 25 C 0.087 3.913 26 H 0.065 0.935 27 C -0.141 4.141 28 C 0.024 3.976 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.019 0.981 34 H -0.046 1.046 35 H 0.008 0.992 36 H 0.262 0.738 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.376 0.624 40 H 0.045 0.955 41 H 0.085 0.915 42 H 0.036 0.964 43 H 0.095 0.905 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.084 0.916 50 H 0.083 0.917 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.465 4.195 -17.794 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.160 4.160 3 C -0.049 4.049 4 N -0.248 5.248 5 C 0.084 3.916 6 C -0.553 4.553 7 H 0.083 0.917 8 C -0.197 4.197 9 N -0.578 5.578 10 Si 0.792 3.208 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.187 1.187 14 C -0.095 4.095 15 C 0.076 3.924 16 H 0.106 0.894 17 O -0.352 6.352 18 C -0.098 4.098 19 N -0.251 5.251 20 C -0.104 4.104 21 C 0.031 3.969 22 H 0.137 0.863 23 C -0.226 4.226 24 O -0.314 6.314 25 C 0.029 3.971 26 H 0.082 0.918 27 C -0.199 4.199 28 C -0.104 4.104 29 H 0.130 0.870 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.037 0.963 34 H -0.028 1.028 35 H 0.026 0.974 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.224 0.776 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.103 0.897 50 H 0.102 0.898 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.464 3.231 -18.316 22.389 hybrid contribution -0.571 1.594 1.878 2.529 sum 11.893 4.825 -16.437 20.854 Atomic orbital electron populations 1.23893 0.95686 1.02190 1.01717 1.22868 0.95872 0.98490 0.98745 1.21277 0.94171 0.94351 0.95057 1.61935 1.15042 1.46123 1.01722 1.19371 0.93374 0.92258 0.86560 1.21457 0.97899 1.44679 0.91275 0.91670 1.25899 0.96583 0.95456 1.01808 1.70101 1.16209 1.50172 1.21271 0.85417 0.78610 0.78612 0.78186 1.19824 1.21199 1.18739 1.22697 0.95210 0.91942 0.99654 1.21667 0.90949 0.83986 0.95767 0.89442 1.86522 1.65126 1.33712 1.49872 1.22748 0.95707 0.96983 0.94361 1.62062 1.04981 1.56515 1.01514 1.22860 0.91442 0.95562 1.00584 1.22388 0.94239 0.97473 0.82826 0.86325 1.22206 1.02017 0.95939 1.02441 1.87997 1.34931 1.69219 1.39269 1.22190 0.83908 0.96033 0.94931 0.91751 1.21756 1.00618 1.02649 0.94873 1.22867 0.98004 0.99577 0.89937 0.87048 0.88985 0.87493 0.89199 0.96308 1.02799 0.97426 0.92890 0.95798 0.91118 0.77649 0.93685 0.89625 0.94550 0.88641 0.92237 0.90863 0.92350 0.92078 0.91220 0.89700 0.89826 0.94520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.37 14.32 67.78 0.97 -5.40 16 2 C -0.14 -5.04 8.76 25.65 0.22 -4.82 16 3 C 0.08 2.87 5.29 85.56 0.45 3.33 16 4 N -0.52 -22.18 4.26 -905.38 -3.86 -26.04 16 5 C 0.21 11.16 4.58 85.56 0.39 11.56 16 6 C -0.51 -28.74 8.52 25.60 0.22 -28.52 16 7 H 0.07 3.52 7.50 -2.91 -0.02 3.50 16 8 C 0.00 0.01 5.46 84.65 0.46 0.47 16 9 N -0.94 -56.48 13.29 21.45 0.28 -56.20 16 10 Si 0.97 43.92 29.54 68.60 2.03 45.94 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 14 C 0.03 1.21 4.46 86.30 0.39 1.60 16 15 C 0.14 3.85 2.92 30.60 0.09 3.94 16 16 H 0.09 2.47 4.99 -2.39 -0.01 2.46 16 17 O -0.55 -17.02 13.07 -148.98 -1.95 -18.97 16 18 C 0.03 0.71 4.66 86.30 0.40 1.11 16 19 N -0.53 -11.34 3.90 -895.20 -3.49 -14.83 16 20 C 0.02 0.44 5.02 86.32 0.43 0.87 16 21 C 0.09 1.56 3.92 30.63 0.12 1.68 16 22 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 23 C -0.17 -2.93 8.88 71.98 0.64 -2.29 16 24 O -0.39 -8.40 10.28 -148.98 -1.53 -9.93 16 25 C 0.09 1.70 3.03 30.63 0.09 1.79 16 26 H 0.06 1.34 6.49 -2.39 -0.02 1.33 16 27 C -0.14 -2.17 9.57 71.98 0.69 -1.48 16 28 C 0.02 0.50 4.75 86.32 0.41 0.91 16 29 H 0.11 3.14 8.06 -2.91 -0.02 3.11 16 30 H 0.09 2.90 7.84 -2.91 -0.02 2.88 16 31 H 0.11 3.85 8.06 -2.91 -0.02 3.83 16 32 H 0.09 2.83 5.94 -2.39 -0.01 2.82 16 33 H 0.02 0.70 7.71 -2.39 -0.02 0.68 16 34 H -0.05 -2.64 8.05 -2.38 -0.02 -2.66 16 35 H 0.01 0.44 7.16 -2.39 -0.02 0.43 16 36 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.02 0.84 8.12 -2.39 -0.02 0.83 16 38 H 0.07 2.73 7.09 -2.39 -0.02 2.71 16 39 H 0.38 10.35 9.05 -74.05 -0.67 9.68 16 40 H 0.04 1.01 8.00 -2.39 -0.02 1.00 16 41 H 0.09 1.87 7.88 -2.39 -0.02 1.85 16 42 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.10 1.57 8.02 -2.39 -0.02 1.55 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.06 1.24 6.13 -2.39 -0.01 1.23 16 47 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 48 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 50 H 0.08 1.76 6.77 -2.39 -0.02 1.74 16 51 H 0.04 0.77 8.13 -2.39 -0.02 0.75 16 Total: -1.00 -65.86 396.08 -2.33 -68.18 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.21 Total: 27.10 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 5.98 Total: -15.26 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -7.06 Total: -97.07 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -3.48 Total: -28.90 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -65.86 -2.33 -68.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428856843.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.977 kcal (2) G-P(sol) polarization free energy of solvation -65.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds