Wall clock time and date at job start Fri Apr 10 2020 18:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 120.00195 * 2 1 4 4 N 1.46900 * 109.46954 * 125.00119 * 3 2 1 5 5 C 1.46906 * 110.99768 * 287.48904 * 4 3 2 6 6 C 1.50700 * 109.46860 * 160.75403 * 5 4 3 7 7 H 1.08000 * 119.99981 * 3.69492 * 6 5 4 8 8 C 1.37875 * 119.99999 * 183.69935 * 6 5 4 9 9 N 1.31523 * 120.00108 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00117 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47148 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46752 * 120.00242 * 10 8 6 13 13 H 1.48492 * 109.47348 * 240.00022 * 10 8 6 14 14 C 1.46892 * 111.00032 * 163.53794 * 4 3 2 15 15 C 1.53009 * 109.46957 * 293.95240 * 14 4 3 16 16 H 1.08997 * 109.46704 * 59.99763 * 15 14 4 17 17 O 1.42894 * 109.46870 * 300.00235 * 15 14 4 18 18 C 1.53000 * 109.47052 * 179.97438 * 15 14 4 19 19 N 1.46903 * 109.46919 * 180.47039 * 18 15 14 20 20 C 1.47016 * 110.99748 * 76.41493 * 19 18 15 21 21 C 1.53103 * 109.25421 * 182.39198 * 20 19 18 22 22 H 1.09002 * 109.50718 * 63.08950 * 21 20 19 23 23 C 1.53003 * 109.50379 * 183.17155 * 21 20 19 24 24 O 1.43007 * 109.25676 * 303.14897 * 21 20 19 25 25 C 1.43013 * 113.73971 * 58.67423 * 24 21 20 26 26 H 1.08996 * 109.50863 * 61.30534 * 25 24 21 27 27 C 1.53004 * 109.50435 * 181.39203 * 25 24 21 28 28 C 1.47010 * 111.00119 * 200.04707 * 19 18 15 29 29 H 1.07999 * 120.00020 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00425 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00020 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46602 * 5.00331 * 3 2 1 33 33 H 1.08994 * 109.47026 * 245.00386 * 3 2 1 34 34 H 1.09001 * 109.46740 * 280.74835 * 5 4 3 35 35 H 1.08998 * 109.47250 * 40.75083 * 5 4 3 36 36 H 0.97001 * 119.99826 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.47607 * 173.95557 * 14 4 3 38 38 H 1.09005 * 109.47547 * 53.95091 * 14 4 3 39 39 H 0.96710 * 113.99662 * 299.99512 * 17 15 14 40 40 H 1.09004 * 109.46978 * 60.47360 * 18 15 14 41 41 H 1.08996 * 109.47521 * 300.47249 * 18 15 14 42 42 H 1.08996 * 109.50592 * 62.45704 * 20 19 18 43 43 H 1.08997 * 109.50406 * 302.32428 * 20 19 18 44 44 H 1.09004 * 109.47255 * 59.99663 * 23 21 20 45 45 H 1.08997 * 109.47294 * 180.02562 * 23 21 20 46 46 H 1.09001 * 109.47103 * 300.00074 * 23 21 20 47 47 H 1.09000 * 109.47427 * 60.00218 * 27 25 24 48 48 H 1.09007 * 109.46927 * 179.97438 * 27 25 24 49 49 H 1.08994 * 109.47220 * 299.99697 * 27 25 24 50 50 H 1.09002 * 109.50710 * 57.67196 * 28 19 18 51 51 H 1.09007 * 109.54094 * 297.56713 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9964 1.3319 1.1345 5 6 2.2766 1.5014 2.4039 6 6 3.1584 1.0610 3.5439 7 1 4.1742 0.7487 3.3514 8 6 2.6683 1.0569 4.8326 9 7 1.4312 1.4367 5.0670 10 14 3.7611 0.5104 6.2457 11 1 5.0983 0.1346 5.7206 12 1 3.9065 1.6234 7.2180 13 1 3.1474 -0.6605 6.9219 14 6 4.0086 2.3818 0.9591 15 6 4.8992 2.0370 -0.2363 16 1 4.2883 1.9672 -1.1363 17 8 5.5470 0.7851 -0.0022 18 6 5.9531 3.1309 -0.4195 19 7 6.8011 2.8055 -1.5741 20 6 6.1027 3.0874 -2.8367 21 6 6.9970 2.6791 -4.0104 22 1 7.1736 1.6040 -3.9766 23 6 6.3088 3.0427 -5.3276 24 8 8.2449 3.3713 -3.9156 25 6 8.9521 3.1191 -2.6984 26 1 9.1863 2.0570 -2.6269 27 6 10.2493 3.9303 -2.6839 28 6 8.0777 3.5318 -1.5115 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 2.0115 2.5506 2.5339 35 1 1.3700 0.8964 2.3911 36 1 1.0866 1.4341 5.9737 37 1 4.6195 2.4516 1.8590 38 1 3.5144 3.3369 0.7805 39 1 6.1089 0.7742 0.7849 40 1 6.5694 3.1954 0.4773 41 1 5.4585 4.0871 -0.5899 42 1 5.8822 4.1529 -2.9006 43 1 5.1729 2.5198 -2.8729 44 1 6.1338 4.1181 -5.3614 45 1 6.9457 2.7514 -6.1628 46 1 5.3563 2.5173 -5.3970 47 1 10.0145 4.9924 -2.7539 48 1 10.7877 3.7381 -1.7558 49 1 10.8697 3.6388 -3.5313 50 1 8.5896 3.2886 -0.5804 51 1 7.8893 4.6046 -1.5538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428856846.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:54 Heat of formation + Delta-G solvation = -67.358284 kcal Electronic energy + Delta-G solvation = -27294.843413 eV Core-core repulsion = 23615.868613 eV Total energy + Delta-G solvation = -3678.974801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.03841 -38.13678 -36.31795 -34.97669 -33.93074 -33.09736 -32.21673 -30.75782 -29.51261 -27.36168 -26.93609 -26.23975 -24.29017 -22.87449 -22.21820 -21.02629 -20.56374 -20.35165 -19.12398 -16.82170 -16.55221 -16.28333 -16.02877 -15.75516 -15.53645 -15.11803 -14.63685 -14.43957 -14.22266 -14.07024 -13.82896 -13.53100 -13.30725 -13.04903 -12.88598 -12.57566 -12.34886 -12.29108 -12.16155 -12.09945 -11.92507 -11.54804 -11.28933 -11.21394 -11.14772 -11.06720 -10.72394 -10.65072 -10.61939 -10.46481 -10.41528 -9.99171 -9.80030 -9.30933 -9.21506 -8.74654 -8.43297 -8.39073 -7.22843 -6.01165 -4.02170 2.83700 3.30560 3.38376 3.42519 3.43285 3.58925 4.42634 4.50890 4.67460 4.71126 4.79358 4.90276 4.95626 4.99794 5.14748 5.18513 5.24637 5.28743 5.31323 5.33950 5.35202 5.44915 5.50993 5.57775 5.61223 5.69142 5.69375 5.71384 5.75099 5.79028 5.84425 5.88751 5.97010 6.04997 6.12652 6.28369 6.44981 6.54782 6.83890 6.84807 7.07362 7.14248 7.24922 7.25639 7.37181 7.82820 8.10573 8.19537 8.26926 8.55231 9.05550 9.61659 11.09479 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.014654 B = 0.003271 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.294061 B = 8558.912056 C =10072.009498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C 0.078 3.922 4 N -0.518 5.518 5 C 0.192 3.808 6 C -0.501 4.501 7 H 0.063 0.937 8 C 0.053 3.947 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.284 1.284 14 C 0.032 3.968 15 C 0.121 3.879 16 H 0.087 0.913 17 O -0.534 6.534 18 C 0.022 3.978 19 N -0.524 5.524 20 C 0.024 3.976 21 C 0.091 3.909 22 H 0.068 0.932 23 C -0.144 4.144 24 O -0.383 6.383 25 C 0.091 3.909 26 H 0.067 0.933 27 C -0.144 4.144 28 C 0.024 3.976 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.024 0.976 33 H 0.067 0.933 34 H -0.014 1.014 35 H 0.037 0.963 36 H 0.260 0.740 37 H 0.085 0.915 38 H 0.023 0.977 39 H 0.369 0.631 40 H 0.079 0.921 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.085 0.915 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.516 4.992 -17.358 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.136 4.136 3 C -0.050 4.050 4 N -0.242 5.242 5 C 0.067 3.933 6 C -0.539 4.539 7 H 0.081 0.919 8 C -0.147 4.147 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.211 1.211 14 C -0.097 4.097 15 C 0.060 3.940 16 H 0.105 0.895 17 O -0.338 6.338 18 C -0.107 4.107 19 N -0.248 5.248 20 C -0.104 4.104 21 C 0.033 3.967 22 H 0.086 0.914 23 C -0.202 4.202 24 O -0.303 6.303 25 C 0.033 3.967 26 H 0.085 0.915 27 C -0.201 4.201 28 C -0.105 4.105 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.003 0.997 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.041 0.959 39 H 0.215 0.785 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.084 0.916 50 H 0.103 0.897 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.481 4.025 -17.852 21.603 hybrid contribution -0.119 1.505 1.735 2.300 sum 11.362 5.530 -16.117 20.480 Atomic orbital electron populations 1.23673 0.96013 1.01078 1.03930 1.22845 0.95233 0.98829 0.96679 1.21220 0.94366 0.94207 0.95240 1.62015 1.14181 1.45315 1.02736 1.19787 0.94292 0.94944 0.84288 1.21182 0.99046 1.43085 0.90626 0.91875 1.24996 0.95120 0.95698 0.98925 1.69975 1.14814 1.48467 1.20671 0.86471 0.80754 0.78194 0.82164 1.19650 1.21262 1.21057 1.22659 0.95677 0.92743 0.98662 1.21852 0.90966 0.83541 0.97621 0.89507 1.86552 1.65364 1.32412 1.49425 1.22936 0.96190 0.98064 0.93486 1.62102 1.04012 1.56964 1.01761 1.22859 0.98156 0.99581 0.89848 1.22120 0.83685 0.96493 0.94380 0.91387 1.21748 1.00268 1.02453 0.95685 1.87949 1.33222 1.70614 1.38529 1.22117 0.91487 0.99568 0.83543 0.91460 1.21747 0.95354 1.00454 1.02581 1.22843 0.91466 0.96397 0.99751 0.89299 0.88963 0.87194 0.95755 0.91498 0.99655 0.94490 0.93064 0.89649 0.95877 0.78468 0.90246 0.93970 0.94282 0.89512 0.92008 0.91635 0.90794 0.92009 0.90890 0.91632 0.89665 0.94302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.47 14.32 29.01 0.42 -3.06 16 2 C -0.12 -2.12 8.79 -36.02 -0.32 -2.44 16 3 C 0.08 1.42 5.28 -4.97 -0.03 1.40 16 4 N -0.52 -10.91 4.24 -237.51 -1.01 -11.91 16 5 C 0.19 4.95 4.58 -4.97 -0.02 4.93 16 6 C -0.50 -13.87 8.59 -34.44 -0.30 -14.16 16 7 H 0.06 1.72 7.66 -52.49 -0.40 1.32 16 8 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 9 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 10 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 14 C 0.03 0.57 4.45 -3.82 -0.02 0.56 16 15 C 0.12 1.78 2.94 -26.73 -0.08 1.70 16 16 H 0.09 1.30 5.05 -51.93 -0.26 1.04 16 17 O -0.53 -8.74 13.08 -35.23 -0.46 -9.20 16 18 C 0.02 0.27 4.67 -3.82 -0.02 0.25 16 19 N -0.52 -6.27 4.53 -234.31 -1.06 -7.33 16 20 C 0.02 0.27 4.75 -3.71 -0.02 0.25 16 21 C 0.09 0.96 3.42 -26.68 -0.09 0.87 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 23 C -0.14 -1.21 9.57 37.16 0.36 -0.85 16 24 O -0.38 -4.44 10.11 -35.23 -0.36 -4.79 16 25 C 0.09 0.92 3.43 -26.68 -0.09 0.82 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 C -0.14 -1.12 9.57 37.16 0.36 -0.77 16 28 C 0.02 0.25 4.88 -3.72 -0.02 0.23 16 29 H 0.09 1.43 7.84 -52.49 -0.41 1.02 16 30 H 0.09 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.02 0.45 7.70 -51.93 -0.40 0.05 16 33 H 0.07 1.09 5.93 -51.93 -0.31 0.79 16 34 H -0.01 -0.40 8.01 -51.93 -0.42 -0.81 16 35 H 0.04 1.04 7.16 -51.93 -0.37 0.67 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.09 1.64 7.31 -51.93 -0.38 1.26 16 38 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 39 H 0.37 5.34 9.05 45.56 0.41 5.76 16 40 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 41 H 0.04 0.51 7.98 -51.93 -0.41 0.10 16 42 H 0.04 0.44 8.13 -51.93 -0.42 0.02 16 43 H 0.09 0.97 6.85 -51.93 -0.36 0.62 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.08 0.82 8.02 -51.93 -0.42 0.40 16 51 H 0.04 0.42 8.14 -51.92 -0.42 -0.01 16 LS Contribution 401.13 15.07 6.04 6.04 Total: -1.00 -31.17 401.13 -9.85 -41.02 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -8.76 Total: 4.52 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 0.04 Total: -8.85 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -1.33 Total: -45.24 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.82 Total: -13.99 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.17 -9.85 -41.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428856846.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.342 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds