Wall clock time and date at job start Fri Apr 10 2020 18:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 120.00195 * 2 1 4 4 N 1.46900 * 109.46954 * 125.00119 * 3 2 1 5 5 C 1.46906 * 110.99768 * 287.48904 * 4 3 2 6 6 C 1.50700 * 109.46860 * 160.75403 * 5 4 3 7 7 H 1.08000 * 119.99981 * 3.69492 * 6 5 4 8 8 C 1.37875 * 119.99999 * 183.69935 * 6 5 4 9 9 N 1.31523 * 120.00108 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00117 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47148 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46752 * 120.00242 * 10 8 6 13 13 H 1.48492 * 109.47348 * 240.00022 * 10 8 6 14 14 C 1.46892 * 111.00032 * 163.53794 * 4 3 2 15 15 C 1.53009 * 109.46957 * 293.95240 * 14 4 3 16 16 H 1.08997 * 109.46704 * 59.99763 * 15 14 4 17 17 O 1.42894 * 109.46870 * 300.00235 * 15 14 4 18 18 C 1.53000 * 109.47052 * 179.97438 * 15 14 4 19 19 N 1.46903 * 109.46919 * 180.47039 * 18 15 14 20 20 C 1.47016 * 110.99748 * 76.41493 * 19 18 15 21 21 C 1.53103 * 109.25421 * 182.39198 * 20 19 18 22 22 H 1.09002 * 109.50718 * 63.08950 * 21 20 19 23 23 C 1.53003 * 109.50379 * 183.17155 * 21 20 19 24 24 O 1.43007 * 109.25676 * 303.14897 * 21 20 19 25 25 C 1.43013 * 113.73971 * 58.67423 * 24 21 20 26 26 H 1.08996 * 109.50863 * 61.30534 * 25 24 21 27 27 C 1.53004 * 109.50435 * 181.39203 * 25 24 21 28 28 C 1.47010 * 111.00119 * 200.04707 * 19 18 15 29 29 H 1.07999 * 120.00020 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00425 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00020 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46602 * 5.00331 * 3 2 1 33 33 H 1.08994 * 109.47026 * 245.00386 * 3 2 1 34 34 H 1.09001 * 109.46740 * 280.74835 * 5 4 3 35 35 H 1.08998 * 109.47250 * 40.75083 * 5 4 3 36 36 H 0.97001 * 119.99826 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.47607 * 173.95557 * 14 4 3 38 38 H 1.09005 * 109.47547 * 53.95091 * 14 4 3 39 39 H 0.96710 * 113.99662 * 299.99512 * 17 15 14 40 40 H 1.09004 * 109.46978 * 60.47360 * 18 15 14 41 41 H 1.08996 * 109.47521 * 300.47249 * 18 15 14 42 42 H 1.08996 * 109.50592 * 62.45704 * 20 19 18 43 43 H 1.08997 * 109.50406 * 302.32428 * 20 19 18 44 44 H 1.09004 * 109.47255 * 59.99663 * 23 21 20 45 45 H 1.08997 * 109.47294 * 180.02562 * 23 21 20 46 46 H 1.09001 * 109.47103 * 300.00074 * 23 21 20 47 47 H 1.09000 * 109.47427 * 60.00218 * 27 25 24 48 48 H 1.09007 * 109.46927 * 179.97438 * 27 25 24 49 49 H 1.08994 * 109.47220 * 299.99697 * 27 25 24 50 50 H 1.09002 * 109.50710 * 57.67196 * 28 19 18 51 51 H 1.09007 * 109.54094 * 297.56713 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9964 1.3319 1.1345 5 6 2.2766 1.5014 2.4039 6 6 3.1584 1.0610 3.5439 7 1 4.1742 0.7487 3.3514 8 6 2.6683 1.0569 4.8326 9 7 1.4312 1.4367 5.0670 10 14 3.7611 0.5104 6.2457 11 1 5.0983 0.1346 5.7206 12 1 3.9065 1.6234 7.2180 13 1 3.1474 -0.6605 6.9219 14 6 4.0086 2.3818 0.9591 15 6 4.8992 2.0370 -0.2363 16 1 4.2883 1.9672 -1.1363 17 8 5.5470 0.7851 -0.0022 18 6 5.9531 3.1309 -0.4195 19 7 6.8011 2.8055 -1.5741 20 6 6.1027 3.0874 -2.8367 21 6 6.9970 2.6791 -4.0104 22 1 7.1736 1.6040 -3.9766 23 6 6.3088 3.0427 -5.3276 24 8 8.2449 3.3713 -3.9156 25 6 8.9521 3.1191 -2.6984 26 1 9.1863 2.0570 -2.6269 27 6 10.2493 3.9303 -2.6839 28 6 8.0777 3.5318 -1.5115 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 2.0115 2.5506 2.5339 35 1 1.3700 0.8964 2.3911 36 1 1.0866 1.4341 5.9737 37 1 4.6195 2.4516 1.8590 38 1 3.5144 3.3369 0.7805 39 1 6.1089 0.7742 0.7849 40 1 6.5694 3.1954 0.4773 41 1 5.4585 4.0871 -0.5899 42 1 5.8822 4.1529 -2.9006 43 1 5.1729 2.5198 -2.8729 44 1 6.1338 4.1181 -5.3614 45 1 6.9457 2.7514 -6.1628 46 1 5.3563 2.5173 -5.3970 47 1 10.0145 4.9924 -2.7539 48 1 10.7877 3.7381 -1.7558 49 1 10.8697 3.6388 -3.5313 50 1 8.5896 3.2886 -0.5804 51 1 7.8893 4.6046 -1.5538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428856846.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:54 Heat of formation + Delta-G solvation = -90.415001 kcal Electronic energy + Delta-G solvation = -27295.843227 eV Core-core repulsion = 23615.868613 eV Total energy + Delta-G solvation = -3679.974615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.92036 -39.50642 -37.64185 -36.07228 -34.96437 -34.67678 -33.91799 -31.72262 -30.67031 -29.18420 -27.72138 -27.44042 -25.90006 -24.25998 -22.99641 -22.35453 -21.86619 -21.37189 -20.58797 -18.51949 -17.66360 -17.50703 -17.22627 -16.89053 -16.75066 -16.32962 -16.07470 -15.66809 -15.55967 -15.40967 -14.96142 -14.79618 -14.66648 -14.14511 -14.00362 -13.80041 -13.54093 -13.30816 -13.10541 -13.03474 -12.86604 -12.84572 -12.74924 -12.68620 -12.50656 -12.44725 -12.23322 -12.06066 -11.93801 -11.81386 -11.65704 -11.44814 -11.25529 -10.86158 -10.60148 -10.40605 -10.16150 -9.34955 -8.95968 -8.16809 -6.26248 1.41280 1.42527 1.44494 1.56021 2.42065 2.58466 2.73265 3.15036 3.32606 3.66313 3.79885 3.86237 3.89388 4.06442 4.09245 4.11500 4.14542 4.21322 4.27896 4.33908 4.40661 4.45204 4.47954 4.59138 4.64468 4.65786 4.68499 4.71547 4.72520 4.77252 4.83027 4.98581 5.00689 5.04365 5.13283 5.15620 5.19744 5.22066 5.29833 5.32221 5.67672 5.75721 5.88581 5.91475 5.95220 6.12517 6.27151 6.41410 6.63829 6.89639 7.05611 7.43068 8.93930 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.014654 B = 0.003271 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.294061 B = 8558.912056 C =10072.009498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 C 0.079 3.921 4 N -0.525 5.525 5 C 0.210 3.790 6 C -0.513 4.513 7 H 0.064 0.936 8 C 0.000 4.000 9 N -0.937 5.937 10 Si 0.967 3.033 11 H -0.260 1.260 12 H -0.280 1.280 13 H -0.283 1.283 14 C 0.034 3.966 15 C 0.136 3.864 16 H 0.088 0.912 17 O -0.549 6.549 18 C 0.031 3.969 19 N -0.534 5.534 20 C 0.024 3.976 21 C 0.090 3.910 22 H 0.060 0.940 23 C -0.140 4.140 24 O -0.396 6.396 25 C 0.087 3.913 26 H 0.061 0.939 27 C -0.139 4.139 28 C 0.025 3.975 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.019 0.981 33 H 0.090 0.910 34 H -0.044 1.044 35 H 0.008 0.992 36 H 0.262 0.738 37 H 0.070 0.930 38 H 0.026 0.974 39 H 0.376 0.624 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.038 0.962 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.060 0.940 48 H 0.089 0.911 49 H 0.068 0.932 50 H 0.095 0.905 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.930 4.932 -17.864 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.160 4.160 3 C -0.048 4.048 4 N -0.249 5.249 5 C 0.083 3.917 6 C -0.551 4.551 7 H 0.083 0.917 8 C -0.198 4.198 9 N -0.578 5.578 10 Si 0.792 3.208 11 H -0.184 1.184 12 H -0.206 1.206 13 H -0.209 1.209 14 C -0.095 4.095 15 C 0.076 3.924 16 H 0.106 0.894 17 O -0.353 6.353 18 C -0.098 4.098 19 N -0.259 5.259 20 C -0.104 4.104 21 C 0.032 3.968 22 H 0.078 0.922 23 C -0.197 4.197 24 O -0.316 6.316 25 C 0.030 3.970 26 H 0.079 0.921 27 C -0.196 4.196 28 C -0.103 4.103 29 H 0.110 0.890 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.038 0.962 33 H 0.108 0.892 34 H -0.026 1.026 35 H 0.026 0.974 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.224 0.776 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.079 0.921 48 H 0.108 0.892 49 H 0.087 0.913 50 H 0.113 0.887 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.916 3.969 -18.384 22.816 hybrid contribution -0.601 1.521 1.841 2.463 sum 12.315 5.491 -16.543 21.342 Atomic orbital electron populations 1.23892 0.95673 1.02192 1.01702 1.22874 0.95879 0.98504 0.98750 1.21274 0.94180 0.94355 0.95010 1.61935 1.14616 1.46593 1.01762 1.19392 0.93431 0.92267 0.86563 1.21486 0.99271 1.42827 0.91520 0.91744 1.25898 0.96466 0.95640 1.01785 1.70105 1.16677 1.49594 1.21415 0.85368 0.79182 0.77714 0.78558 1.18395 1.20597 1.20853 1.22696 0.95119 0.92110 0.99570 1.21679 0.91038 0.83892 0.95806 0.89396 1.86524 1.65596 1.33286 1.49934 1.22751 0.95743 0.97052 0.94209 1.62070 1.04496 1.57550 1.01739 1.22877 0.98219 0.99475 0.89819 1.22189 0.83508 0.95970 0.95141 0.92234 1.21745 1.00720 1.02607 0.94647 1.87946 1.33616 1.70804 1.39272 1.22245 0.92176 0.99670 0.82946 0.92068 1.21741 0.94317 0.99932 1.03622 1.22884 0.90819 0.96105 1.00468 0.88953 0.87070 0.87525 0.96234 0.89227 1.02642 0.97389 0.92898 0.91178 0.95630 0.77626 0.89609 0.93482 0.94355 0.89656 0.91993 0.91170 0.89566 0.92108 0.89248 0.91338 0.88689 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.39 14.32 67.78 0.97 -5.42 16 2 C -0.14 -5.08 8.79 25.65 0.23 -4.85 16 3 C 0.08 2.90 5.28 85.56 0.45 3.35 16 4 N -0.53 -22.29 4.24 -905.36 -3.84 -26.13 16 5 C 0.21 11.12 4.58 85.56 0.39 11.52 16 6 C -0.51 -28.71 8.59 25.60 0.22 -28.49 16 7 H 0.06 3.52 7.66 -2.91 -0.02 3.49 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 9 N -0.94 -56.53 13.29 21.45 0.28 -56.25 16 10 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 11 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 C 0.03 1.22 4.45 86.31 0.38 1.60 16 15 C 0.14 3.88 2.94 30.60 0.09 3.97 16 16 H 0.09 2.51 5.05 -2.39 -0.01 2.50 16 17 O -0.55 -17.38 13.08 -148.98 -1.95 -19.33 16 18 C 0.03 0.73 4.67 86.30 0.40 1.13 16 19 N -0.53 -12.03 4.53 -895.21 -4.06 -16.08 16 20 C 0.02 0.51 4.75 86.32 0.41 0.92 16 21 C 0.09 1.79 3.42 30.63 0.10 1.90 16 22 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 23 C -0.14 -2.14 9.57 71.98 0.69 -1.45 16 24 O -0.40 -8.71 10.11 -148.98 -1.51 -10.21 16 25 C 0.09 1.64 3.43 30.63 0.10 1.75 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 C -0.14 -1.92 9.57 71.98 0.69 -1.23 16 28 C 0.03 0.49 4.88 86.31 0.42 0.91 16 29 H 0.09 2.91 7.84 -2.91 -0.02 2.89 16 30 H 0.11 3.15 8.06 -2.91 -0.02 3.12 16 31 H 0.11 3.87 8.06 -2.91 -0.02 3.85 16 32 H 0.02 0.73 7.70 -2.39 -0.02 0.71 16 33 H 0.09 2.83 5.93 -2.39 -0.01 2.82 16 34 H -0.04 -2.54 8.01 -2.39 -0.02 -2.56 16 35 H 0.01 0.46 7.16 -2.39 -0.02 0.45 16 36 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.07 2.70 7.31 -2.39 -0.02 2.69 16 38 H 0.03 0.90 8.12 -2.38 -0.02 0.88 16 39 H 0.38 10.54 9.05 -74.05 -0.67 9.87 16 40 H 0.09 1.91 7.85 -2.39 -0.02 1.89 16 41 H 0.05 1.07 7.98 -2.39 -0.02 1.05 16 42 H 0.04 0.82 8.13 -2.39 -0.02 0.80 16 43 H 0.09 1.80 6.85 -2.39 -0.02 1.79 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.09 1.64 8.02 -2.39 -0.02 1.62 16 51 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -66.59 401.13 -2.81 -69.40 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.20 Total: 26.47 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 6.02 Total: -13.96 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -7.61 Total: -98.46 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -3.45 Total: -29.54 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -66.59 -2.81 -69.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428856846.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.014 kcal (2) G-P(sol) polarization free energy of solvation -66.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds