Wall clock time and date at job start Fri Apr 10 2020 18:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46952 * 111.00101 * 2 1 4 4 C 1.53056 * 109.36261 * 183.18453 * 3 2 1 5 5 N 1.46949 * 109.36711 * 301.59763 * 4 3 2 6 6 C 1.46902 * 111.00156 * 183.18493 * 5 4 3 7 7 C 1.53006 * 109.46626 * 46.20399 * 6 5 4 8 8 N 1.46500 * 109.46998 * 179.97438 * 7 6 5 9 9 C 1.34769 * 120.00241 * 180.02562 * 8 7 6 10 10 O 1.21587 * 120.00166 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00187 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99847 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46659 * 179.97438 * 12 11 9 14 14 C 1.50709 * 109.46980 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99538 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00024 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00019 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99907 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46922 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46891 * 119.99776 * 18 16 14 21 21 H 1.48498 * 109.47258 * 240.00087 * 18 16 14 22 22 C 1.46962 * 110.87960 * 59.32167 * 5 4 3 23 23 C 1.46966 * 110.99807 * 123.79826 * 2 1 3 24 24 C 1.53002 * 109.48567 * 56.84422 * 23 2 1 25 25 C 1.52999 * 109.48796 * 296.78024 * 23 2 1 26 26 H 1.08997 * 109.47221 * 296.20123 * 1 2 3 27 27 H 1.09005 * 109.47058 * 56.19904 * 1 2 3 28 28 H 1.09004 * 109.47571 * 176.19918 * 1 2 3 29 29 H 1.09002 * 109.49119 * 303.15348 * 3 2 1 30 30 H 1.08999 * 109.49188 * 63.20106 * 3 2 1 31 31 H 1.09007 * 109.48507 * 181.62999 * 4 3 2 32 32 H 1.08997 * 109.48705 * 61.57073 * 4 3 2 33 33 H 1.08993 * 109.47737 * 286.20531 * 6 5 4 34 34 H 1.09000 * 109.47263 * 166.20093 * 6 5 4 35 35 H 1.09000 * 109.47050 * 299.99824 * 7 6 5 36 36 H 1.09001 * 109.46801 * 59.99937 * 7 6 5 37 37 H 0.97010 * 119.99910 * 359.97438 * 8 7 6 38 38 H 0.96996 * 120.00041 * 359.97438 * 11 9 8 39 39 H 1.08992 * 109.47399 * 299.99606 * 12 11 9 40 40 H 1.08996 * 109.46901 * 60.00043 * 12 11 9 41 41 H 1.08996 * 109.47916 * 300.00334 * 13 12 11 42 42 H 1.09000 * 109.47354 * 60.00623 * 13 12 11 43 43 H 0.96997 * 120.00123 * 180.02562 * 17 16 14 44 44 H 1.08995 * 109.48778 * 60.64619 * 22 5 4 45 45 H 1.08998 * 109.48707 * 180.71127 * 22 5 4 46 46 H 1.08997 * 109.46594 * 179.89358 * 24 23 2 47 47 H 1.08996 * 109.47443 * 299.88957 * 24 23 2 48 48 H 1.08995 * 109.47275 * 59.89574 * 24 23 2 49 49 H 1.08997 * 109.47089 * 300.10875 * 25 23 2 50 50 H 1.08998 * 109.47244 * 60.10887 * 25 23 2 51 51 H 1.09004 * 109.46844 * 180.10915 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5235 1.3289 -0.0802 5 7 4.0500 0.5658 1.0598 6 6 5.5191 0.5657 1.0599 7 6 6.0291 1.9863 0.8094 8 7 7.4941 1.9864 0.8100 9 6 8.1680 3.1359 0.6079 10 8 7.5602 4.1728 0.4247 11 7 9.5157 3.1358 0.6080 12 6 10.2483 4.3854 0.3878 13 6 11.7525 4.1100 0.4370 14 6 12.5062 5.3952 0.2099 15 1 11.9662 6.3162 0.0471 16 6 13.8849 5.3952 0.2098 17 7 14.5424 4.2735 0.4075 18 14 14.8190 6.9883 -0.0710 19 1 13.8540 8.1000 -0.2663 20 1 15.6727 7.2762 1.1095 21 1 15.6726 6.8553 -1.2788 22 6 3.5234 -0.8062 1.0599 23 6 1.9956 -0.7632 1.1402 24 6 1.4420 -2.1890 1.0993 25 6 1.5718 -0.0878 2.4460 26 1 -0.3633 0.4537 0.9220 27 1 -0.3633 0.5717 -0.8540 28 1 -0.3634 -1.0254 -0.0681 29 1 1.6013 1.9128 -0.8603 30 1 1.6935 1.8775 0.9172 31 1 3.9178 2.3448 -0.0512 32 1 3.8253 0.8478 -1.0105 33 1 5.8824 -0.0948 0.2727 34 1 5.8824 0.2142 2.0256 35 1 5.6658 2.3378 -0.1563 36 1 5.6657 2.6469 1.5966 37 1 7.9791 1.1591 0.9566 38 1 10.0007 2.3086 0.7538 39 1 9.9851 4.7938 -0.5879 40 1 9.9849 5.1027 1.1650 41 1 12.0156 3.7018 1.4128 42 1 12.0162 3.3926 -0.3400 43 1 15.5124 4.2735 0.4078 44 1 3.8253 -1.3116 0.1426 45 1 3.9177 -1.3470 1.9201 46 1 1.8343 -2.7553 1.9440 47 1 0.3540 -2.1581 1.1565 48 1 1.7435 -2.6693 0.1685 49 1 1.9656 0.9281 2.4740 50 1 0.4837 -0.0574 2.5028 51 1 1.9642 -0.6531 3.2914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440984122.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:13 Heat of formation + Delta-G solvation = -45.587922 kcal Electronic energy + Delta-G solvation = -26084.435577 eV Core-core repulsion = 22438.697561 eV Total energy + Delta-G solvation = -3645.738016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.227 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.25008 -40.84060 -37.80144 -36.58113 -35.38128 -34.77700 -33.95700 -31.80670 -30.58823 -29.07630 -28.17652 -27.16190 -26.42469 -24.56313 -24.14611 -22.92577 -21.99035 -21.75639 -19.42785 -19.30174 -18.43239 -17.64296 -16.95753 -16.82767 -16.71226 -16.46562 -16.15289 -15.99399 -15.49481 -15.32473 -15.22399 -15.09786 -14.75740 -14.50281 -14.24149 -14.05645 -13.65569 -13.26440 -13.19040 -13.03618 -12.95287 -12.78404 -12.69361 -12.50924 -12.48078 -12.36249 -12.21470 -12.06738 -12.04335 -11.69121 -11.63794 -11.50518 -11.30770 -11.18236 -10.60431 -10.34984 -9.71871 -9.40630 -9.17128 -8.23444 -6.33413 1.41740 1.42608 1.55653 1.69985 2.16300 2.41740 2.85986 2.95047 3.11474 3.46704 3.69422 3.78136 3.97939 4.05767 4.11655 4.21471 4.33431 4.34762 4.45959 4.48893 4.53217 4.56024 4.64259 4.66567 4.72081 4.81089 4.83987 4.86088 4.87630 4.90980 4.93625 4.99410 5.01926 5.05174 5.15933 5.30311 5.31859 5.45032 5.47798 5.52687 5.60671 5.79851 5.92129 5.95453 6.04879 6.17128 6.18300 6.21661 6.79938 7.13269 7.35898 7.59615 8.88644 Molecular weight = 312.23amu Principal moments of inertia in cm(-1) A = 0.044988 B = 0.001771 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.233506 B =15805.902967 C =16149.749248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.544 5.544 3 C 0.056 3.944 4 C 0.049 3.951 5 N -0.537 5.537 6 C 0.057 3.943 7 C 0.142 3.858 8 N -0.731 5.731 9 C 0.698 3.302 10 O -0.641 6.641 11 N -0.733 5.733 12 C 0.160 3.840 13 C 0.023 3.977 14 C -0.546 4.546 15 H 0.058 0.942 16 C 0.007 3.993 17 N -0.926 5.926 18 Si 0.965 3.035 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.070 3.930 23 C 0.104 3.896 24 C -0.136 4.136 25 C -0.165 4.165 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.412 0.588 38 H 0.408 0.592 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.266 0.734 44 H 0.038 0.962 45 H 0.091 0.909 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.055 0.945 50 H 0.054 0.946 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.455 -16.436 2.252 32.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.079 4.079 5 N -0.262 5.262 6 C -0.071 4.071 7 C 0.017 3.983 8 N -0.389 5.389 9 C 0.398 3.602 10 O -0.523 6.523 11 N -0.387 5.387 12 C 0.036 3.964 13 C -0.014 4.014 14 C -0.584 4.584 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.566 5.566 18 Si 0.790 3.210 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.058 4.058 23 C 0.014 3.986 24 C -0.194 4.194 25 C -0.224 4.224 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.248 0.752 38 H 0.243 0.757 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.109 0.891 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.074 0.926 50 H 0.073 0.927 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -28.845 -15.568 2.089 32.844 hybrid contribution 1.210 0.203 -0.062 1.228 sum -27.635 -15.365 2.026 31.685 Atomic orbital electron populations 1.22467 0.86639 1.02941 1.00762 1.62417 1.08682 1.13482 1.42264 1.22162 0.93959 0.89841 1.01253 1.22283 0.94962 0.98835 0.91807 1.62173 1.06494 1.14704 1.42798 1.22160 0.87626 0.94396 1.02920 1.21216 0.77809 0.97839 1.01401 1.44814 1.07225 1.08985 1.77873 1.16129 0.81995 0.84166 0.77936 1.90863 1.68870 1.33166 1.59377 1.45204 1.04184 1.12666 1.76692 1.21072 0.91880 0.84355 0.99101 1.19142 0.89159 0.96699 0.96449 1.21501 0.92098 0.95197 1.49620 0.92326 1.25863 0.98714 0.99992 0.94625 1.70058 1.08121 1.27993 1.50396 0.85391 0.78367 0.79320 0.77927 1.19023 1.20218 1.20217 1.22220 0.93826 0.88371 1.01342 1.21170 0.93659 0.94753 0.88990 1.21854 1.01383 0.93633 1.02554 1.22267 1.00702 1.01644 0.97760 0.95158 0.91244 0.90230 0.89822 0.93990 0.90130 0.94492 0.93111 0.88523 0.92526 0.92412 0.75164 0.75689 0.93882 0.93878 0.97186 0.97212 0.92561 0.94402 0.89095 0.90975 0.91599 0.92256 0.92603 0.92749 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.81 127.69 1.12 1.34 16 2 N -0.54 -7.78 4.73 -872.11 -4.13 -11.91 16 3 C 0.06 0.87 5.24 86.31 0.45 1.32 16 4 C 0.05 0.84 4.93 86.31 0.43 1.27 16 5 N -0.54 -8.54 4.18 -895.71 -3.74 -12.28 16 6 C 0.06 0.87 5.39 86.31 0.47 1.33 16 7 C 0.14 3.09 4.94 86.38 0.43 3.52 16 8 N -0.73 -17.67 5.56 -478.53 -2.66 -20.33 16 9 C 0.70 24.52 8.57 179.06 1.53 26.06 16 10 O -0.64 -28.34 16.34 -3.99 -0.07 -28.40 16 11 N -0.73 -25.97 5.56 -478.54 -2.66 -28.64 16 12 C 0.16 7.07 5.61 86.38 0.48 7.55 16 13 C 0.02 1.17 5.09 29.85 0.15 1.32 16 14 C -0.55 -30.72 9.11 25.60 0.23 -30.49 16 15 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 16 C 0.01 0.38 5.46 84.66 0.46 0.84 16 17 N -0.93 -54.29 13.29 21.45 0.28 -54.00 16 18 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 22 C 0.07 0.95 4.29 86.31 0.37 1.32 16 23 C 0.10 1.32 0.68 3.53 0.00 1.32 16 24 C -0.14 -1.30 8.14 71.98 0.59 -0.72 16 25 C -0.17 -2.13 7.65 71.98 0.55 -1.58 16 26 H 0.03 0.33 6.39 -2.39 -0.02 0.32 16 27 H 0.07 0.72 8.13 -2.38 -0.02 0.70 16 28 H 0.08 0.74 6.25 -2.39 -0.01 0.73 16 29 H 0.08 1.19 8.13 -2.39 -0.02 1.17 16 30 H 0.04 0.70 6.34 -2.39 -0.02 0.68 16 31 H 0.08 1.52 5.99 -2.38 -0.01 1.51 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.71 8.08 -2.39 -0.02 0.69 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 1.38 6.26 -2.39 -0.01 1.36 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.41 7.10 8.49 -92.70 -0.79 6.31 16 38 H 0.41 12.06 8.49 -92.71 -0.79 11.27 16 39 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 43 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 46 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 47 H 0.07 0.56 6.36 -2.39 -0.02 0.54 16 48 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.05 0.92 5.94 -2.39 -0.01 0.91 16 50 H 0.05 0.65 6.48 -2.39 -0.02 0.64 16 51 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -69.42 389.51 -4.33 -73.75 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -0.66 Total: 21.52 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 7.27 Total: 14.41 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -12.91 Total: -127.15 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.07 Total: -28.40 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -69.42 -4.33 -73.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440984122.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.164 kcal (2) G-P(sol) polarization free energy of solvation -69.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds