Wall clock time and date at job start Fri Apr 10 2020 18:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00363 * 2 1 4 4 C 1.52994 * 109.47423 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47155 * 64.99715 * 4 3 2 6 6 C 1.37093 * 120.00001 * 264.47291 * 5 4 3 7 7 H 1.07996 * 120.00354 * 138.26912 * 6 5 4 8 8 C 1.38961 * 120.00113 * 318.26565 * 6 5 4 9 9 N 1.31409 * 119.99752 * 341.89220 * 8 6 5 10 10 Si 1.86801 * 119.99703 * 161.88869 * 8 6 5 11 11 H 1.48500 * 109.47052 * 90.00414 * 10 8 6 12 12 H 1.48506 * 109.46746 * 210.00255 * 10 8 6 13 13 H 1.48497 * 109.47437 * 329.99979 * 10 8 6 14 14 C 1.34773 * 119.99685 * 84.47523 * 5 4 3 15 15 O 1.21290 * 120.00217 * 359.97438 * 14 5 4 16 16 C 1.50701 * 119.99735 * 180.02562 * 14 5 4 17 17 N 1.46496 * 109.47266 * 179.97438 * 16 14 5 18 18 C 1.44173 * 112.10101 * 270.29629 * 17 16 14 19 19 C 1.53449 * 112.90448 * 179.75381 * 18 17 16 20 20 C 1.52562 * 109.38666 * 79.46002 * 19 18 17 21 21 C 1.51728 * 112.76615 * 322.89064 * 20 19 18 22 22 C 1.52387 * 106.52291 * 277.08808 * 21 20 19 23 23 C 1.53813 * 109.23964 * 63.68557 * 22 21 20 24 24 C 1.32690 * 112.03133 * 89.99678 * 17 16 14 25 25 O 1.21290 * 119.42718 * 349.69093 * 24 17 16 26 26 H 1.09006 * 109.47092 * 60.00330 * 1 2 3 27 27 H 1.09003 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47104 * 300.00168 * 1 2 3 29 29 H 1.09000 * 109.47209 * 59.99378 * 3 2 1 30 30 H 1.09003 * 109.46830 * 300.00278 * 3 2 1 31 31 H 1.09007 * 109.46963 * 304.99630 * 4 3 2 32 32 H 1.09001 * 109.47238 * 185.00060 * 4 3 2 33 33 H 0.96999 * 119.99898 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47440 * 59.99738 * 16 14 5 35 35 H 1.08997 * 109.47390 * 299.99867 * 16 14 5 36 36 H 1.08999 * 108.97382 * 58.73498 * 18 17 16 37 37 H 1.09005 * 108.59600 * 300.50509 * 18 17 16 38 38 H 1.09001 * 109.48698 * 319.48762 * 19 18 17 39 39 H 1.09003 * 109.48683 * 199.43429 * 19 18 17 40 40 H 1.09004 * 108.82674 * 202.04634 * 20 19 18 41 41 H 1.08997 * 108.74215 * 83.68108 * 20 19 18 42 42 H 1.08996 * 110.04012 * 157.83853 * 21 20 19 43 43 H 1.08997 * 110.12600 * 36.38569 * 21 20 19 44 44 H 1.08998 * 109.50663 * 303.75492 * 22 21 20 45 45 H 1.08997 * 109.50952 * 183.61347 * 22 21 20 46 46 H 1.09007 * 109.81739 * 295.29392 * 23 22 21 47 47 H 1.08995 * 109.82127 * 174.38758 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.2071 -0.7867 -1.3022 7 1 3.8794 -1.3583 -2.1578 8 6 4.8624 -1.4201 -0.2532 9 7 5.5675 -0.7148 0.6025 10 14 4.7408 -3.2741 -0.0596 11 1 5.8435 -3.9238 -0.8128 12 1 4.8470 -3.6295 1.3784 13 1 3.4355 -3.7427 -0.5902 14 6 4.1561 1.3204 -2.3516 15 8 3.9519 2.5151 -2.3063 16 6 4.6094 0.6818 -3.6392 17 7 4.7282 1.7079 -4.6779 18 6 3.4966 1.8886 -5.4052 19 6 3.5987 2.9644 -6.4947 20 6 4.2905 2.3784 -7.7218 21 6 5.4046 1.4130 -7.3627 22 6 6.6372 2.2615 -7.0748 23 6 6.3665 3.1489 -5.8480 24 6 5.9414 2.2445 -4.7111 25 8 6.7249 2.0020 -3.8176 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8508 0.5684 0.8428 32 1 3.9785 2.1764 0.0902 33 1 6.0247 -1.1569 1.3349 34 1 3.8804 -0.0666 -3.9500 35 1 5.5775 0.2046 -3.4870 36 1 2.7099 2.1708 -4.7055 37 1 3.2259 0.9412 -5.8713 38 1 4.1776 3.8083 -6.1194 39 1 2.5988 3.3017 -6.7675 40 1 4.7083 3.1934 -8.3128 41 1 3.5496 1.8522 -8.3236 42 1 5.6005 0.7412 -8.1983 43 1 5.1320 0.8381 -6.4777 44 1 6.8559 2.8903 -7.9378 45 1 7.4880 1.6108 -6.8727 46 1 5.5700 3.8582 -6.0734 47 1 7.2740 3.6864 -5.5731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457182345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:23 Heat of formation + Delta-G solvation = -88.783710 kcal Electronic energy + Delta-G solvation = -28347.033534 eV Core-core repulsion = 24531.296562 eV Total energy + Delta-G solvation = -3815.736971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.64032 -38.37315 -37.00921 -36.81814 -34.94781 -34.26460 -31.69604 -31.49307 -29.76601 -28.72352 -26.31402 -25.95413 -25.60623 -24.46590 -22.10764 -21.78327 -20.65155 -19.03734 -18.40554 -17.28309 -16.59991 -16.14286 -15.89359 -15.69979 -15.35112 -15.17131 -14.80663 -14.34358 -14.27573 -14.09091 -13.72065 -13.36280 -13.21364 -13.19905 -12.81995 -12.29811 -12.25752 -11.99394 -11.92686 -11.65352 -11.39168 -11.16389 -11.12582 -11.10141 -10.96952 -10.80077 -10.72873 -10.62298 -10.57232 -10.30517 -9.99696 -9.97589 -9.15280 -9.10255 -8.94570 -8.70191 -7.89094 -7.34824 -6.23079 -3.95127 3.15855 3.22455 3.31028 3.36209 3.50018 4.00888 4.26181 4.52510 4.68531 4.75619 4.83372 4.87473 4.92089 5.06703 5.16228 5.22364 5.41998 5.53076 5.62847 5.66326 5.69722 5.71493 5.78515 5.83152 5.91973 5.95414 5.97848 5.98106 6.04464 6.10014 6.12387 6.16426 6.32995 6.34435 6.37694 6.43261 6.57946 6.67920 6.82546 7.31057 7.55224 7.86652 8.11447 8.17438 8.45936 8.71047 9.22608 9.62569 10.05428 10.81163 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.004702 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.722661 B = 5953.295015 C = 6716.781996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.053 3.947 4 C 0.123 3.877 5 N -0.429 5.429 6 C -0.328 4.328 7 H 0.083 0.917 8 C 0.050 3.950 9 N -0.862 5.862 10 Si 0.913 3.087 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.469 3.531 15 O -0.604 6.604 16 C 0.083 3.917 17 N -0.583 5.583 18 C 0.134 3.866 19 C -0.140 4.140 20 C -0.119 4.119 21 C -0.143 4.143 22 C -0.111 4.111 23 C -0.151 4.151 24 C 0.529 3.471 25 O -0.534 6.534 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.029 0.971 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.268 0.732 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.096 0.904 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 3.372 -13.026 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.025 4.025 4 C -0.001 4.001 5 N -0.147 5.147 6 C -0.456 4.456 7 H 0.100 0.900 8 C -0.156 4.156 9 N -0.498 5.498 10 Si 0.740 3.260 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.257 3.743 15 O -0.491 6.491 16 C -0.044 4.044 17 N -0.315 5.315 18 C 0.012 3.988 19 C -0.178 4.178 20 C -0.157 4.157 21 C -0.180 4.180 22 C -0.148 4.148 23 C -0.190 4.190 24 C 0.317 3.683 25 O -0.410 6.410 26 H 0.049 0.951 27 H 0.096 0.904 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.123 0.877 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.114 0.886 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.195 3.712 -12.430 13.974 hybrid contribution -0.438 -0.734 0.313 0.910 sum -5.632 2.977 -12.117 13.690 Atomic orbital electron populations 1.22640 0.83521 1.01683 0.98776 1.88138 1.17284 1.27832 1.95027 1.23052 0.96718 0.84181 0.98519 1.21303 0.88808 0.98855 0.91151 1.43211 1.56862 1.07286 1.07372 1.19162 1.36900 0.82122 1.07447 0.89954 1.25338 0.93672 0.99656 0.96904 1.69942 1.27466 1.36573 1.15793 0.86174 0.78683 0.83531 0.77625 1.20532 1.20922 1.19319 1.20659 0.80324 0.86523 0.86815 1.90488 1.57235 1.15320 1.86014 1.21444 1.04557 0.90612 0.87756 1.46589 1.10369 1.39850 1.34665 1.20988 0.85189 0.98903 0.93741 1.22117 1.01666 0.98863 0.95111 1.21326 0.97900 0.99017 0.97428 1.21700 0.95106 0.98180 1.03009 1.21557 0.98547 0.98171 0.96565 1.22491 1.03545 0.98463 0.94548 1.19773 0.80925 0.80949 0.86695 1.90795 1.51783 1.60447 1.38004 0.95087 0.90442 0.95195 0.94433 0.94160 0.87724 0.91416 0.92225 0.89503 0.87083 0.91322 0.91797 0.90183 0.90414 0.92029 0.92352 0.91677 0.89444 0.91303 0.91687 0.88598 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.79 10.44 -35.23 -0.37 -8.16 16 3 C 0.05 1.12 6.24 37.15 0.23 1.36 16 4 C 0.12 3.05 5.26 -4.04 -0.02 3.03 16 5 N -0.43 -11.14 2.45 -114.81 -0.28 -11.43 16 6 C -0.33 -8.58 8.29 -14.93 -0.12 -8.70 16 7 H 0.08 2.04 7.21 -52.49 -0.38 1.67 16 8 C 0.05 1.33 4.95 -17.46 -0.09 1.24 16 9 N -0.86 -23.98 11.66 55.50 0.65 -23.33 16 10 Si 0.91 20.43 29.59 -169.99 -5.03 15.40 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 14 C 0.47 11.78 7.34 -10.99 -0.08 11.70 16 15 O -0.60 -16.23 16.01 5.55 0.09 -16.14 16 16 C 0.08 1.75 3.97 -5.20 -0.02 1.73 16 17 N -0.58 -10.34 1.16 -176.91 -0.21 -10.55 16 18 C 0.13 1.86 4.75 -5.05 -0.02 1.83 16 19 C -0.14 -1.49 5.60 -26.72 -0.15 -1.64 16 20 C -0.12 -1.09 5.18 -27.60 -0.14 -1.23 16 21 C -0.14 -1.52 5.63 -27.69 -0.16 -1.68 16 22 C -0.11 -1.23 5.52 -26.62 -0.15 -1.38 16 23 C -0.15 -2.08 5.63 -27.13 -0.15 -2.23 16 24 C 0.53 10.07 6.13 -11.58 -0.07 10.00 16 25 O -0.53 -12.97 15.74 5.55 0.09 -12.89 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.10 2.78 5.81 -51.92 -0.30 2.48 16 32 H 0.07 1.73 7.59 -51.93 -0.39 1.34 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.09 1.61 7.30 -51.93 -0.38 1.23 16 35 H 0.11 2.59 6.90 -51.93 -0.36 2.24 16 36 H 0.07 1.07 8.13 -51.93 -0.42 0.64 16 37 H 0.06 0.76 7.35 -51.93 -0.38 0.38 16 38 H 0.08 0.92 5.06 -51.93 -0.26 0.66 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.50 7.62 -51.93 -0.40 0.10 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.13 4.43 -51.93 -0.23 0.90 16 44 H 0.07 0.62 7.86 -51.93 -0.41 0.21 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 1.17 4.47 -51.93 -0.23 0.93 16 47 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -33.73 363.31 -6.92 -40.65 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.51 Total: 5.33 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 0.17 Total: 15.63 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.16 Total: -45.31 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.19 Total: -37.18 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.73 -6.92 -40.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457182345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.132 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds