Wall clock time and date at job start Fri Apr 10 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00363 * 2 1 4 4 C 1.52994 * 109.47423 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47155 * 64.99715 * 4 3 2 6 6 C 1.37093 * 120.00001 * 264.47291 * 5 4 3 7 7 H 1.07996 * 120.00354 * 138.26912 * 6 5 4 8 8 C 1.38961 * 120.00113 * 318.26565 * 6 5 4 9 9 N 1.31409 * 119.99752 * 341.89220 * 8 6 5 10 10 Si 1.86801 * 119.99703 * 161.88869 * 8 6 5 11 11 H 1.48500 * 109.47052 * 90.00414 * 10 8 6 12 12 H 1.48506 * 109.46746 * 210.00255 * 10 8 6 13 13 H 1.48497 * 109.47437 * 329.99979 * 10 8 6 14 14 C 1.34773 * 119.99685 * 84.47523 * 5 4 3 15 15 O 1.21290 * 120.00217 * 359.97438 * 14 5 4 16 16 C 1.50701 * 119.99735 * 180.02562 * 14 5 4 17 17 N 1.46496 * 109.47266 * 179.97438 * 16 14 5 18 18 C 1.44173 * 112.10101 * 270.29629 * 17 16 14 19 19 C 1.53449 * 112.90448 * 179.75381 * 18 17 16 20 20 C 1.52562 * 109.38666 * 79.46002 * 19 18 17 21 21 C 1.51728 * 112.76615 * 322.89064 * 20 19 18 22 22 C 1.52387 * 106.52291 * 277.08808 * 21 20 19 23 23 C 1.53813 * 109.23964 * 63.68557 * 22 21 20 24 24 C 1.32690 * 112.03133 * 89.99678 * 17 16 14 25 25 O 1.21290 * 119.42718 * 349.69093 * 24 17 16 26 26 H 1.09006 * 109.47092 * 60.00330 * 1 2 3 27 27 H 1.09003 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47104 * 300.00168 * 1 2 3 29 29 H 1.09000 * 109.47209 * 59.99378 * 3 2 1 30 30 H 1.09003 * 109.46830 * 300.00278 * 3 2 1 31 31 H 1.09007 * 109.46963 * 304.99630 * 4 3 2 32 32 H 1.09001 * 109.47238 * 185.00060 * 4 3 2 33 33 H 0.96999 * 119.99898 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47440 * 59.99738 * 16 14 5 35 35 H 1.08997 * 109.47390 * 299.99867 * 16 14 5 36 36 H 1.08999 * 108.97382 * 58.73498 * 18 17 16 37 37 H 1.09005 * 108.59600 * 300.50509 * 18 17 16 38 38 H 1.09001 * 109.48698 * 319.48762 * 19 18 17 39 39 H 1.09003 * 109.48683 * 199.43429 * 19 18 17 40 40 H 1.09004 * 108.82674 * 202.04634 * 20 19 18 41 41 H 1.08997 * 108.74215 * 83.68108 * 20 19 18 42 42 H 1.08996 * 110.04012 * 157.83853 * 21 20 19 43 43 H 1.08997 * 110.12600 * 36.38569 * 21 20 19 44 44 H 1.08998 * 109.50663 * 303.75492 * 22 21 20 45 45 H 1.08997 * 109.50952 * 183.61347 * 22 21 20 46 46 H 1.09007 * 109.81739 * 295.29392 * 23 22 21 47 47 H 1.08995 * 109.82127 * 174.38758 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.2071 -0.7867 -1.3022 7 1 3.8794 -1.3583 -2.1578 8 6 4.8624 -1.4201 -0.2532 9 7 5.5675 -0.7148 0.6025 10 14 4.7408 -3.2741 -0.0596 11 1 5.8435 -3.9238 -0.8128 12 1 4.8470 -3.6295 1.3784 13 1 3.4355 -3.7427 -0.5902 14 6 4.1561 1.3204 -2.3516 15 8 3.9519 2.5151 -2.3063 16 6 4.6094 0.6818 -3.6392 17 7 4.7282 1.7079 -4.6779 18 6 3.4966 1.8886 -5.4052 19 6 3.5987 2.9644 -6.4947 20 6 4.2905 2.3784 -7.7218 21 6 5.4046 1.4130 -7.3627 22 6 6.6372 2.2615 -7.0748 23 6 6.3665 3.1489 -5.8480 24 6 5.9414 2.2445 -4.7111 25 8 6.7249 2.0020 -3.8176 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8508 0.5684 0.8428 32 1 3.9785 2.1764 0.0902 33 1 6.0247 -1.1569 1.3349 34 1 3.8804 -0.0666 -3.9500 35 1 5.5775 0.2046 -3.4870 36 1 2.7099 2.1708 -4.7055 37 1 3.2259 0.9412 -5.8713 38 1 4.1776 3.8083 -6.1194 39 1 2.5988 3.3017 -6.7675 40 1 4.7083 3.1934 -8.3128 41 1 3.5496 1.8522 -8.3236 42 1 5.6005 0.7412 -8.1983 43 1 5.1320 0.8381 -6.4777 44 1 6.8559 2.8903 -7.9378 45 1 7.4880 1.6108 -6.8727 46 1 5.5700 3.8582 -6.0734 47 1 7.2740 3.6864 -5.5731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457182345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:22 Heat of formation + Delta-G solvation = -110.588879 kcal Electronic energy + Delta-G solvation = -28347.979077 eV Core-core repulsion = 24531.296562 eV Total energy + Delta-G solvation = -3816.682514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.06026 -40.21785 -38.54127 -38.18972 -36.65988 -35.88906 -33.52284 -32.79575 -31.45238 -29.98808 -27.76355 -27.23057 -27.04293 -26.32759 -23.70946 -22.91529 -21.81898 -20.97453 -19.57334 -19.06175 -18.22891 -17.55295 -17.37870 -17.12678 -17.01832 -16.75532 -16.15144 -16.06948 -15.93305 -15.58708 -15.11195 -15.05111 -14.64212 -14.51097 -13.90852 -13.80648 -13.61440 -13.47532 -13.25136 -13.04628 -12.93525 -12.88427 -12.60599 -12.54720 -12.46947 -12.24740 -12.16376 -12.08352 -11.80866 -11.66311 -11.57871 -11.03184 -10.82758 -10.65063 -10.60167 -10.49645 -9.54241 -9.38883 -8.24936 -6.03072 1.43192 1.48279 1.60562 1.68055 2.04648 2.11023 2.38389 2.95166 3.04954 3.19972 3.65602 3.77126 3.91668 4.02917 4.09948 4.17807 4.21262 4.25205 4.35800 4.42433 4.48938 4.51852 4.56959 4.60304 4.61842 4.71684 4.72838 4.76627 4.81705 4.82196 4.87596 4.96451 5.07547 5.16802 5.23968 5.29114 5.29449 5.32046 5.50386 5.52252 5.58446 6.06765 6.39537 6.42229 6.77745 7.17729 7.23857 7.62013 8.04194 8.80420 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.004702 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.722661 B = 5953.295015 C = 6716.781996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.069 3.931 4 C 0.121 3.879 5 N -0.440 5.440 6 C -0.338 4.338 7 H 0.094 0.906 8 C 0.003 3.997 9 N -0.901 5.901 10 Si 0.982 3.018 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.257 1.257 14 C 0.456 3.544 15 O -0.629 6.629 16 C 0.093 3.907 17 N -0.571 5.571 18 C 0.125 3.875 19 C -0.133 4.133 20 C -0.113 4.113 21 C -0.144 4.144 22 C -0.105 4.105 23 C -0.142 4.142 24 C 0.516 3.484 25 O -0.601 6.601 26 H 0.041 0.959 27 H 0.095 0.905 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.268 0.732 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.103 0.897 45 H 0.050 0.950 46 H 0.119 0.881 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.642 2.831 -15.734 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.008 4.008 4 C -0.003 4.003 5 N -0.158 5.158 6 C -0.465 4.465 7 H 0.111 0.889 8 C -0.199 4.199 9 N -0.539 5.539 10 Si 0.806 3.194 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.181 1.181 14 C 0.245 3.755 15 O -0.518 6.518 16 C -0.035 4.035 17 N -0.301 5.301 18 C 0.004 3.996 19 C -0.170 4.170 20 C -0.151 4.151 21 C -0.181 4.181 22 C -0.143 4.143 23 C -0.181 4.181 24 C 0.306 3.694 25 O -0.483 6.483 26 H 0.060 0.940 27 H 0.114 0.886 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.122 0.878 45 H 0.068 0.932 46 H 0.137 0.863 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.148 3.173 -15.182 17.078 hybrid contribution 0.106 -0.530 1.174 1.292 sum -7.042 2.644 -14.008 15.900 Atomic orbital electron populations 1.22902 0.80480 1.03449 1.00282 1.88065 1.20593 1.27544 1.95308 1.22733 0.93966 0.84703 0.99417 1.21217 0.91680 0.97023 0.90369 1.43467 1.56960 1.07630 1.07791 1.19506 1.36772 0.82302 1.07952 0.88894 1.26234 0.93039 1.04216 0.96414 1.70072 1.28679 1.38549 1.16590 0.85117 0.79119 0.77780 0.77396 1.19911 1.20991 1.18093 1.21366 0.79760 0.86419 0.87953 1.90445 1.58304 1.16352 1.86663 1.21219 1.03256 0.91816 0.87180 1.46814 1.11313 1.38486 1.33502 1.21293 0.82607 1.01587 0.94116 1.22128 1.03314 0.97170 0.94436 1.21294 0.97656 0.99356 0.96760 1.21698 0.95411 0.98523 1.02490 1.21604 0.98462 0.98083 0.96157 1.22540 1.04005 0.98147 0.93413 1.20811 0.80565 0.80800 0.87176 1.90758 1.53708 1.62998 1.40810 0.94044 0.88612 0.93132 0.91749 0.94802 0.89749 0.93576 0.92239 0.87028 0.89941 0.93312 0.89424 0.91206 0.87886 0.89941 0.90455 0.89866 0.92181 0.87828 0.93152 0.86348 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.66 10.44 -148.98 -1.56 -18.22 16 3 C 0.07 2.96 6.24 71.98 0.45 3.41 16 4 C 0.12 6.29 5.26 86.38 0.45 6.75 16 5 N -0.44 -23.74 2.45 -635.54 -1.56 -25.30 16 6 C -0.34 -18.02 8.29 84.04 0.70 -17.32 16 7 H 0.09 4.64 7.21 -2.91 -0.02 4.62 16 8 C 0.00 0.17 4.95 84.93 0.42 0.59 16 9 N -0.90 -52.04 11.66 21.67 0.25 -51.78 16 10 Si 0.98 42.20 29.59 68.60 2.03 44.23 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 13 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 14 C 0.46 23.85 7.34 87.66 0.64 24.49 16 15 O -0.63 -35.23 16.01 -3.06 -0.05 -35.28 16 16 C 0.09 4.05 3.97 85.63 0.34 4.39 16 17 N -0.57 -20.51 1.16 -833.15 -0.97 -21.48 16 18 C 0.12 3.29 4.75 86.96 0.41 3.71 16 19 C -0.13 -2.42 5.60 30.60 0.17 -2.24 16 20 C -0.11 -1.57 5.18 30.03 0.16 -1.42 16 21 C -0.14 -2.65 5.63 29.97 0.17 -2.48 16 22 C -0.11 -2.11 5.52 30.67 0.17 -1.94 16 23 C -0.14 -3.78 5.63 30.33 0.17 -3.61 16 24 C 0.52 20.22 6.13 88.19 0.54 20.76 16 25 O -0.60 -31.04 15.74 -3.06 -0.05 -31.09 16 26 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 4.71 5.81 -2.38 -0.01 4.69 16 32 H 0.05 2.51 7.59 -2.39 -0.02 2.49 16 33 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.11 4.18 7.30 -2.39 -0.02 4.16 16 35 H 0.08 4.09 6.90 -2.39 -0.02 4.07 16 36 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 37 H 0.09 1.90 7.35 -2.38 -0.02 1.89 16 38 H 0.07 1.42 5.06 -2.39 -0.01 1.41 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 0.88 7.62 -2.38 -0.02 0.87 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.06 1.45 4.43 -2.39 -0.01 1.44 16 44 H 0.10 1.41 7.86 -2.39 -0.02 1.39 16 45 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 46 H 0.12 2.63 4.47 -2.38 -0.01 2.62 16 47 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -78.38 363.31 5.10 -73.27 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.96 Total: 28.55 kcal Atomic # 6 Polarization: 31.05 SS G_CDS: 6.04 Total: 37.09 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -2.28 Total: -98.56 kcal Atomic # 8 Polarization: -82.94 SS G_CDS: -1.65 Total: -84.59 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -78.38 5.10 -73.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457182345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.315 kcal (2) G-P(sol) polarization free energy of solvation -78.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds