Wall clock time and date at job start Fri Apr 10 2020 18:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99381 * 2 1 4 4 C 1.53004 * 109.46768 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47262 * 64.99363 * 4 3 2 6 6 C 1.37103 * 120.00144 * 269.99976 * 5 4 3 7 7 H 1.07994 * 119.99699 * 145.18617 * 6 5 4 8 8 C 1.38948 * 120.00102 * 325.18074 * 6 5 4 9 9 N 1.31420 * 119.99870 * 337.38581 * 8 6 5 10 10 Si 1.86793 * 120.00063 * 157.37952 * 8 6 5 11 11 H 1.48502 * 109.47044 * 60.00204 * 10 8 6 12 12 H 1.48493 * 109.47480 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47507 * 300.00284 * 10 8 6 14 14 C 1.34771 * 119.99730 * 90.00547 * 5 4 3 15 15 O 1.21292 * 120.00244 * 4.89492 * 14 5 4 16 16 C 1.50701 * 119.99856 * 184.89500 * 14 5 4 17 17 N 1.46502 * 109.47002 * 179.63688 * 16 14 5 18 18 C 1.34778 * 119.99928 * 180.02562 * 17 16 14 19 19 O 1.21286 * 119.99871 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.00220 * 180.02562 * 18 17 16 21 21 C 1.52999 * 109.47161 * 59.99556 * 20 18 17 22 22 C 1.53007 * 109.47235 * 180.02562 * 21 20 18 23 23 C 1.53000 * 109.46919 * 300.00033 * 22 21 20 24 24 C 1.53001 * 109.47097 * 60.00316 * 23 22 21 25 25 C 1.52999 * 109.46884 * 299.99440 * 24 23 22 26 26 H 1.09002 * 109.47510 * 60.00748 * 1 2 3 27 27 H 1.09009 * 109.46785 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47355 * 299.99929 * 1 2 3 29 29 H 1.08992 * 109.47473 * 60.00221 * 3 2 1 30 30 H 1.09000 * 109.47083 * 299.99259 * 3 2 1 31 31 H 1.09000 * 109.46918 * 304.99354 * 4 3 2 32 32 H 1.09000 * 109.47044 * 185.00030 * 4 3 2 33 33 H 0.96998 * 119.99504 * 185.00791 * 9 8 6 34 34 H 1.09005 * 109.46883 * 59.64406 * 16 14 5 35 35 H 1.08994 * 109.47549 * 299.63769 * 16 14 5 36 36 H 0.96998 * 120.00105 * 0.02562 * 17 16 14 37 37 H 1.09001 * 109.47302 * 299.99961 * 20 18 17 38 38 H 1.08999 * 109.47295 * 300.00375 * 21 20 18 39 39 H 1.09004 * 109.47381 * 60.00246 * 21 20 18 40 40 H 1.09003 * 109.47241 * 180.02562 * 22 21 20 41 41 H 1.08994 * 109.46746 * 60.00337 * 22 21 20 42 42 H 1.08994 * 109.47659 * 299.99744 * 23 22 21 43 43 H 1.09000 * 109.46478 * 179.97438 * 23 22 21 44 44 H 1.08999 * 109.47197 * 179.97438 * 24 23 22 45 45 H 1.08994 * 109.47333 * 59.99228 * 24 23 22 46 46 H 1.09001 * 109.47587 * 300.00606 * 25 24 23 47 47 H 1.08994 * 109.47277 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0969 -0.7986 -1.3368 7 1 3.8641 -1.3053 -2.2616 8 6 4.5196 -1.5280 -0.2322 9 7 5.2122 -0.9402 0.7174 10 14 4.1030 -3.3439 -0.0971 11 1 4.6855 -4.0727 -1.2524 12 1 4.6640 -3.8878 1.1656 13 1 2.6278 -3.5148 -0.0968 14 6 4.2615 1.3337 -2.3217 15 8 4.2404 2.5424 -2.2223 16 6 4.6074 0.6922 -3.6407 17 7 4.8663 1.7341 -4.6375 18 6 5.1961 1.3929 -5.8990 19 8 5.2790 0.2232 -6.2088 20 6 5.4629 2.4646 -6.9242 21 6 6.6318 3.3354 -6.4593 22 6 6.9024 4.4240 -7.4999 23 6 7.2527 3.7731 -8.8395 24 6 6.0837 2.9023 -9.3045 25 6 5.8132 1.8138 -8.2639 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6885 1.8464 -0.8901 31 1 3.8514 0.5685 0.8410 32 1 3.9784 2.1767 0.0889 33 1 5.5693 -1.4636 1.4519 34 1 3.7750 0.0712 -3.9721 35 1 5.4971 0.0740 -3.5219 36 1 4.8003 2.6696 -4.3897 37 1 4.5736 3.0835 -7.0429 38 1 6.3821 3.7995 -5.5051 39 1 7.5213 2.7166 -6.3406 40 1 7.7354 5.0442 -7.1689 41 1 6.0129 5.0427 -7.6181 42 1 8.1422 3.1544 -8.7214 43 1 7.4449 4.5486 -9.5809 44 1 6.3331 2.4389 -10.2591 45 1 5.1942 3.5210 -9.4227 46 1 6.7027 1.1950 -8.1456 47 1 4.9802 1.1937 -8.5949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457184434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:27 Heat of formation + Delta-G solvation = -135.600911 kcal Electronic energy + Delta-G solvation = -26893.090617 eV Core-core repulsion = 23075.323500 eV Total energy + Delta-G solvation = -3817.767117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.97961 -38.75267 -37.46236 -36.94995 -34.90519 -33.81265 -31.63685 -31.28004 -30.77629 -29.60437 -26.93564 -25.77321 -24.67343 -23.40174 -22.59766 -21.75169 -20.22495 -19.60994 -19.18294 -17.64584 -16.63715 -15.96449 -15.69394 -15.49237 -15.25411 -15.06935 -14.81761 -14.40958 -14.33714 -14.18517 -14.13355 -14.11353 -13.44098 -13.34231 -12.59915 -12.40549 -12.37802 -12.20627 -12.01327 -11.86176 -11.45600 -11.29665 -11.20663 -11.16906 -11.04671 -11.00747 -10.72032 -10.63501 -10.48482 -10.37370 -10.17634 -10.10564 -9.37962 -9.21412 -9.00729 -8.59954 -8.58170 -7.57202 -6.37504 -4.01834 2.99128 3.18944 3.26811 3.32598 3.53264 3.74311 4.16632 4.48529 4.59997 4.63855 4.67006 4.77517 5.04065 5.11149 5.13250 5.26568 5.33251 5.40345 5.43791 5.54717 5.63448 5.69580 5.73778 5.85129 5.92797 5.95278 5.98552 6.00286 6.03084 6.09408 6.14113 6.17372 6.20673 6.25768 6.29521 6.37185 6.39209 6.62984 6.86439 7.23658 7.48928 7.75191 7.92959 7.99906 8.32699 8.62639 9.05587 9.40309 9.81087 10.65284 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.003242 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.442925 B = 8633.480010 C = 9194.524863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.054 3.946 4 C 0.108 3.892 5 N -0.417 5.417 6 C -0.335 4.335 7 H 0.091 0.909 8 C 0.056 3.944 9 N -0.861 5.861 10 Si 0.918 3.082 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.269 1.269 14 C 0.455 3.545 15 O -0.614 6.614 16 C 0.119 3.881 17 N -0.712 5.712 18 C 0.512 3.488 19 O -0.549 6.549 20 C -0.104 4.104 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.099 4.099 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.271 0.729 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.407 0.593 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 7.475 -10.623 13.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.023 4.023 4 C -0.016 4.016 5 N -0.133 5.133 6 C -0.463 4.463 7 H 0.108 0.892 8 C -0.150 4.150 9 N -0.498 5.498 10 Si 0.744 3.256 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.194 1.194 14 C 0.244 3.756 15 O -0.502 6.502 16 C -0.007 4.007 17 N -0.365 5.365 18 C 0.298 3.702 19 O -0.427 6.427 20 C -0.125 4.125 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.157 4.157 25 C -0.136 4.136 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.137 0.863 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.244 0.756 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.082 6.985 -10.498 12.656 hybrid contribution -0.585 -0.346 0.430 0.804 sum -1.667 6.640 -10.069 12.176 Atomic orbital electron populations 1.22650 0.83475 1.01781 0.98776 1.88172 1.17302 1.27474 1.94998 1.23005 0.96370 0.84471 0.98493 1.21580 0.89407 0.99362 0.91238 1.43264 1.54751 1.06391 1.08909 1.19315 1.46422 0.80373 1.00145 0.89169 1.25222 0.93909 1.00147 0.95729 1.69807 1.29972 1.37186 1.12793 0.86146 0.79498 0.82318 0.77598 1.19867 1.21119 1.19437 1.20221 0.81525 0.86839 0.86993 1.90485 1.59763 1.14454 1.85522 1.20872 1.02908 0.89998 0.86940 1.45876 1.69718 1.11349 1.09577 1.20582 0.76644 0.90153 0.82853 1.90681 1.52197 1.19781 1.80012 1.21314 1.00279 0.96157 0.94746 1.21550 0.97701 0.96943 0.98879 1.21526 1.01589 0.97439 0.94899 1.21568 0.98519 0.98966 0.96857 1.21560 0.98485 0.97325 0.98303 1.21333 1.02692 0.97172 0.92451 0.95010 0.90420 0.95179 0.94175 0.94433 0.86284 0.90829 0.91845 0.89905 0.88896 0.75596 0.88805 0.91077 0.91304 0.91725 0.91803 0.91903 0.92186 0.91868 0.92036 0.91173 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.63 10.18 -35.23 -0.36 -7.98 16 3 C 0.05 1.10 6.28 37.16 0.23 1.33 16 4 C 0.11 2.51 5.47 -4.04 -0.02 2.49 16 5 N -0.42 -10.25 2.52 -114.81 -0.29 -10.54 16 6 C -0.34 -8.49 8.20 -14.93 -0.12 -8.61 16 7 H 0.09 2.24 7.01 -52.49 -0.37 1.87 16 8 C 0.06 1.43 4.95 -17.46 -0.09 1.34 16 9 N -0.86 -22.54 11.34 55.50 0.63 -21.91 16 10 Si 0.92 20.15 29.61 -169.99 -5.03 15.11 16 11 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 14 C 0.46 10.70 7.70 -10.99 -0.08 10.62 16 15 O -0.61 -14.94 15.22 5.55 0.08 -14.86 16 16 C 0.12 2.49 4.76 -5.19 -0.02 2.47 16 17 N -0.71 -12.75 5.42 -61.47 -0.33 -13.08 16 18 C 0.51 8.68 7.15 -10.99 -0.08 8.60 16 19 O -0.55 -11.20 15.98 5.55 0.09 -11.11 16 20 C -0.10 -1.29 2.52 -91.77 -0.23 -1.53 16 21 C -0.11 -1.26 5.10 -26.73 -0.14 -1.39 16 22 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 23 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 24 C -0.12 -1.08 5.92 -26.73 -0.16 -1.23 16 25 C -0.10 -1.16 4.49 -26.73 -0.12 -1.28 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.12 3.00 5.37 -51.93 -0.28 2.72 16 32 H 0.07 1.70 7.36 -51.93 -0.38 1.32 16 33 H 0.27 6.75 8.32 -40.82 -0.34 6.41 16 34 H 0.08 1.74 7.78 -51.93 -0.40 1.34 16 35 H 0.09 2.05 8.05 -51.93 -0.42 1.63 16 36 H 0.41 6.92 6.86 -40.82 -0.28 6.64 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.81 7.56 -51.93 -0.39 0.41 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 47 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -29.80 377.35 -7.56 -37.36 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.00 Total: 9.32 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: -0.04 Total: 12.00 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.01 Total: -45.53 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.19 Total: -33.95 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.80 -7.56 -37.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457184434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.243 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds