Wall clock time and date at job start Fri Apr 10 2020 18:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99381 * 2 1 4 4 C 1.53004 * 109.46768 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47262 * 64.99363 * 4 3 2 6 6 C 1.37103 * 120.00144 * 269.99976 * 5 4 3 7 7 H 1.07994 * 119.99699 * 145.18617 * 6 5 4 8 8 C 1.38948 * 120.00102 * 325.18074 * 6 5 4 9 9 N 1.31420 * 119.99870 * 337.38581 * 8 6 5 10 10 Si 1.86793 * 120.00063 * 157.37952 * 8 6 5 11 11 H 1.48502 * 109.47044 * 60.00204 * 10 8 6 12 12 H 1.48493 * 109.47480 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47507 * 300.00284 * 10 8 6 14 14 C 1.34771 * 119.99730 * 90.00547 * 5 4 3 15 15 O 1.21292 * 120.00244 * 4.89492 * 14 5 4 16 16 C 1.50701 * 119.99856 * 184.89500 * 14 5 4 17 17 N 1.46502 * 109.47002 * 179.63688 * 16 14 5 18 18 C 1.34778 * 119.99928 * 180.02562 * 17 16 14 19 19 O 1.21286 * 119.99871 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.00220 * 180.02562 * 18 17 16 21 21 C 1.52999 * 109.47161 * 59.99556 * 20 18 17 22 22 C 1.53007 * 109.47235 * 180.02562 * 21 20 18 23 23 C 1.53000 * 109.46919 * 300.00033 * 22 21 20 24 24 C 1.53001 * 109.47097 * 60.00316 * 23 22 21 25 25 C 1.52999 * 109.46884 * 299.99440 * 24 23 22 26 26 H 1.09002 * 109.47510 * 60.00748 * 1 2 3 27 27 H 1.09009 * 109.46785 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47355 * 299.99929 * 1 2 3 29 29 H 1.08992 * 109.47473 * 60.00221 * 3 2 1 30 30 H 1.09000 * 109.47083 * 299.99259 * 3 2 1 31 31 H 1.09000 * 109.46918 * 304.99354 * 4 3 2 32 32 H 1.09000 * 109.47044 * 185.00030 * 4 3 2 33 33 H 0.96998 * 119.99504 * 185.00791 * 9 8 6 34 34 H 1.09005 * 109.46883 * 59.64406 * 16 14 5 35 35 H 1.08994 * 109.47549 * 299.63769 * 16 14 5 36 36 H 0.96998 * 120.00105 * 0.02562 * 17 16 14 37 37 H 1.09001 * 109.47302 * 299.99961 * 20 18 17 38 38 H 1.08999 * 109.47295 * 300.00375 * 21 20 18 39 39 H 1.09004 * 109.47381 * 60.00246 * 21 20 18 40 40 H 1.09003 * 109.47241 * 180.02562 * 22 21 20 41 41 H 1.08994 * 109.46746 * 60.00337 * 22 21 20 42 42 H 1.08994 * 109.47659 * 299.99744 * 23 22 21 43 43 H 1.09000 * 109.46478 * 179.97438 * 23 22 21 44 44 H 1.08999 * 109.47197 * 179.97438 * 24 23 22 45 45 H 1.08994 * 109.47333 * 59.99228 * 24 23 22 46 46 H 1.09001 * 109.47587 * 300.00606 * 25 24 23 47 47 H 1.08994 * 109.47277 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0969 -0.7986 -1.3368 7 1 3.8641 -1.3053 -2.2616 8 6 4.5196 -1.5280 -0.2322 9 7 5.2122 -0.9402 0.7174 10 14 4.1030 -3.3439 -0.0971 11 1 4.6855 -4.0727 -1.2524 12 1 4.6640 -3.8878 1.1656 13 1 2.6278 -3.5148 -0.0968 14 6 4.2615 1.3337 -2.3217 15 8 4.2404 2.5424 -2.2223 16 6 4.6074 0.6922 -3.6407 17 7 4.8663 1.7341 -4.6375 18 6 5.1961 1.3929 -5.8990 19 8 5.2790 0.2232 -6.2088 20 6 5.4629 2.4646 -6.9242 21 6 6.6318 3.3354 -6.4593 22 6 6.9024 4.4240 -7.4999 23 6 7.2527 3.7731 -8.8395 24 6 6.0837 2.9023 -9.3045 25 6 5.8132 1.8138 -8.2639 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6885 1.8464 -0.8901 31 1 3.8514 0.5685 0.8410 32 1 3.9784 2.1767 0.0889 33 1 5.5693 -1.4636 1.4519 34 1 3.7750 0.0712 -3.9721 35 1 5.4971 0.0740 -3.5219 36 1 4.8003 2.6696 -4.3897 37 1 4.5736 3.0835 -7.0429 38 1 6.3821 3.7995 -5.5051 39 1 7.5213 2.7166 -6.3406 40 1 7.7354 5.0442 -7.1689 41 1 6.0129 5.0427 -7.6181 42 1 8.1422 3.1544 -8.7214 43 1 7.4449 4.5486 -9.5809 44 1 6.3331 2.4389 -10.2591 45 1 5.1942 3.5210 -9.4227 46 1 6.7027 1.1950 -8.1456 47 1 4.9802 1.1937 -8.5949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457184434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:26 Heat of formation + Delta-G solvation = -154.331572 kcal Electronic energy + Delta-G solvation = -26893.902840 eV Core-core repulsion = 23075.323500 eV Total energy + Delta-G solvation = -3818.579340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.36194 -40.45736 -38.68610 -38.37669 -36.73803 -35.42142 -33.57031 -32.31510 -31.61363 -31.22028 -28.48388 -27.28778 -26.46500 -24.53693 -23.53613 -23.24609 -21.41292 -21.10803 -20.59657 -19.23220 -18.28273 -17.51969 -17.23312 -17.12406 -16.73857 -16.58211 -16.26042 -16.01611 -15.76332 -15.70537 -15.16665 -14.99512 -14.91782 -14.68255 -14.12703 -13.77080 -13.59511 -13.51574 -13.28194 -13.16990 -13.05961 -12.90040 -12.82656 -12.53082 -12.45283 -12.21606 -12.11390 -12.02020 -11.81514 -11.53660 -11.33229 -11.09903 -10.99058 -10.70916 -10.56335 -10.44122 -10.15418 -9.49700 -8.30741 -6.00233 1.41215 1.49803 1.57225 1.60964 1.88151 2.06247 2.36804 2.93101 3.00941 3.16537 3.62433 3.76024 3.80947 4.07504 4.24383 4.26774 4.30196 4.32818 4.43776 4.45087 4.46775 4.52658 4.56695 4.59274 4.60614 4.61979 4.63758 4.73602 4.77672 4.85763 4.99124 5.14351 5.19344 5.27448 5.27656 5.30787 5.35154 5.38587 5.42649 5.53589 5.58686 5.92910 6.37215 6.42263 6.56231 7.10425 7.20789 7.50366 7.89251 8.72169 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.003242 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.442925 B = 8633.480010 C = 9194.524863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.065 3.935 4 C 0.105 3.895 5 N -0.427 5.427 6 C -0.347 4.347 7 H 0.089 0.911 8 C 0.021 3.979 9 N -0.887 5.887 10 Si 0.975 3.025 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.269 1.269 14 C 0.450 3.550 15 O -0.625 6.625 16 C 0.132 3.868 17 N -0.708 5.708 18 C 0.509 3.491 19 O -0.586 6.586 20 C -0.095 4.095 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.113 4.113 25 C -0.097 4.097 26 H 0.040 0.960 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.273 0.727 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.413 0.587 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 8.369 -11.677 14.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.013 4.013 4 C -0.018 4.018 5 N -0.144 5.144 6 C -0.475 4.475 7 H 0.107 0.893 8 C -0.183 4.183 9 N -0.524 5.524 10 Si 0.799 3.201 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.194 1.194 14 C 0.239 3.761 15 O -0.514 6.514 16 C 0.004 3.996 17 N -0.362 5.362 18 C 0.298 3.702 19 O -0.466 6.466 20 C -0.116 4.116 21 C -0.149 4.149 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.150 4.150 25 C -0.136 4.136 26 H 0.059 0.941 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.251 0.749 37 H 0.134 0.866 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.070 0.930 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.870 7.905 -11.560 14.128 hybrid contribution -0.354 -0.607 0.771 1.043 sum -2.224 7.298 -10.789 13.214 Atomic orbital electron populations 1.22876 0.80800 1.03160 1.00314 1.88100 1.20290 1.27767 1.95296 1.22814 0.94155 0.84689 0.99598 1.21561 0.91800 0.98293 0.90178 1.43452 1.54961 1.06434 1.09511 1.19471 1.46695 0.80880 1.00413 0.89324 1.25905 0.93500 1.03606 0.95290 1.69894 1.30733 1.38516 1.13292 0.85274 0.79023 0.78092 0.77683 1.19401 1.20657 1.19423 1.20574 0.81118 0.86795 0.87591 1.90460 1.60210 1.14820 1.85911 1.20571 1.01940 0.90454 0.86585 1.45862 1.69920 1.10915 1.09499 1.21476 0.75116 0.90750 0.82888 1.90659 1.53661 1.21773 1.80533 1.21376 1.01817 0.94986 0.93395 1.21558 0.96390 0.97238 0.99752 1.21522 1.02612 0.96664 0.94196 1.21582 0.97927 0.99257 0.97084 1.21538 0.99357 0.96568 0.97581 1.21333 1.01430 0.97902 0.92892 0.94113 0.89216 0.92895 0.91297 0.94858 0.88179 0.91515 0.91703 0.90214 0.90435 0.74886 0.86592 0.91344 0.92639 0.90727 0.90517 0.92563 0.90211 0.90859 0.90717 0.92972 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.33 10.18 -148.98 -1.52 -17.85 16 3 C 0.06 2.59 6.28 71.98 0.45 3.04 16 4 C 0.11 4.96 5.47 86.38 0.47 5.43 16 5 N -0.43 -21.36 2.52 -635.54 -1.60 -22.97 16 6 C -0.35 -17.84 8.20 84.04 0.69 -17.15 16 7 H 0.09 4.49 7.01 -2.91 -0.02 4.47 16 8 C 0.02 1.06 4.95 84.92 0.42 1.48 16 9 N -0.89 -47.01 11.34 21.66 0.25 -46.77 16 10 Si 0.97 41.29 29.61 68.60 2.03 43.32 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 12 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 13 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 14 C 0.45 21.49 7.70 87.66 0.67 22.17 16 15 O -0.62 -30.61 15.22 -3.07 -0.05 -30.66 16 16 C 0.13 5.64 4.76 85.63 0.41 6.05 16 17 N -0.71 -25.57 5.42 -466.78 -2.53 -28.10 16 18 C 0.51 17.38 7.15 87.66 0.63 18.01 16 19 O -0.59 -24.46 15.98 -3.05 -0.05 -24.51 16 20 C -0.09 -2.27 2.52 -11.54 -0.03 -2.30 16 21 C -0.11 -2.35 5.10 30.60 0.16 -2.19 16 22 C -0.11 -1.71 5.92 30.60 0.18 -1.53 16 23 C -0.12 -1.73 5.92 30.59 0.18 -1.55 16 24 C -0.11 -1.77 5.92 30.59 0.18 -1.58 16 25 C -0.10 -2.21 4.49 30.60 0.14 -2.07 16 26 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 5.13 5.37 -2.39 -0.01 5.12 16 32 H 0.07 3.15 7.36 -2.39 -0.02 3.13 16 33 H 0.27 13.72 8.32 -92.71 -0.77 12.94 16 34 H 0.08 3.44 7.78 -2.38 -0.02 3.43 16 35 H 0.08 3.55 8.05 -2.39 -0.02 3.53 16 36 H 0.41 13.97 6.86 -92.71 -0.64 13.33 16 37 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.07 1.48 7.56 -2.39 -0.02 1.46 16 39 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 47 H 0.06 1.42 8.10 -2.39 -0.02 1.41 16 Total: -1.00 -64.48 377.35 2.65 -61.83 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.32 Total: 35.91 kcal Atomic # 6 Polarization: 23.98 SS G_CDS: 5.80 Total: 29.78 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -3.89 Total: -97.84 kcal Atomic # 8 Polarization: -71.40 SS G_CDS: -1.61 Total: -73.01 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -64.48 2.65 -61.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457184434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.499 kcal (2) G-P(sol) polarization free energy of solvation -64.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds