Wall clock time and date at job start Fri Apr 10 2020 18:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00317 * 2 1 4 4 C 1.50696 * 109.47273 * 293.95550 * 3 2 1 5 5 H 1.08005 * 119.99993 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99926 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00238 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00336 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47249 * 89.99192 * 8 6 4 10 10 H 1.48501 * 109.47575 * 209.99718 * 8 6 4 11 11 H 1.48503 * 109.46927 * 329.99526 * 8 6 4 12 12 C 1.46900 * 110.99867 * 123.95585 * 2 1 3 13 13 C 1.52995 * 109.47116 * 164.00952 * 12 2 1 14 14 H 1.09001 * 109.47206 * 58.50721 * 13 12 2 15 15 O 1.42901 * 109.47232 * 298.50855 * 13 12 2 16 16 C 1.53002 * 109.47311 * 178.51267 * 13 12 2 17 17 N 1.46902 * 109.47266 * 185.00416 * 16 13 12 18 18 C 1.46904 * 110.99818 * 179.97438 * 17 16 13 19 19 H 1.08997 * 109.54091 * 324.81873 * 18 17 16 20 20 C 1.53180 * 109.54251 * 84.99576 * 18 17 16 21 21 C 1.53092 * 109.15668 * 176.84515 * 20 18 17 22 22 O 1.42903 * 109.41925 * 302.38794 * 21 20 18 23 23 C 1.42898 * 114.09344 * 61.16329 * 22 21 20 24 24 H 1.08996 * 109.48403 * 58.82499 * 23 22 21 25 25 C 1.53003 * 109.48057 * 178.84977 * 23 22 21 26 26 C 1.52995 * 117.49675 * 8.74003 * 25 23 22 27 27 C 1.53004 * 117.49461 * 300.08285 * 25 23 22 28 28 C 1.53096 * 109.41471 * 298.83958 * 23 22 21 29 29 H 1.09000 * 109.47225 * 301.53297 * 1 2 3 30 30 H 1.09007 * 109.46621 * 61.52975 * 1 2 3 31 31 H 1.09001 * 109.47395 * 181.52699 * 1 2 3 32 32 H 1.09004 * 109.46377 * 53.95453 * 3 2 1 33 33 H 1.08992 * 109.47219 * 173.94849 * 3 2 1 34 34 H 0.96992 * 120.00502 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46881 * 44.00777 * 12 2 1 36 36 H 1.08998 * 109.47095 * 284.01373 * 12 2 1 37 37 H 0.96698 * 114.00134 * 299.99862 * 15 13 12 38 38 H 1.09005 * 109.46820 * 304.99871 * 16 13 12 39 39 H 1.09001 * 109.47141 * 64.99753 * 16 13 12 40 40 H 1.00903 * 110.99750 * 303.94825 * 17 16 13 41 41 H 1.08994 * 109.52445 * 296.75024 * 20 18 17 42 42 H 1.08996 * 109.51949 * 56.94075 * 20 18 17 43 43 H 1.08998 * 109.48256 * 62.37926 * 21 20 18 44 44 H 1.09007 * 109.47427 * 182.40795 * 21 20 18 45 45 H 1.08997 * 115.54864 * 154.41930 * 25 23 22 46 46 H 1.09000 * 117.50412 * 0.02562 * 26 25 23 47 47 H 1.09003 * 117.49624 * 145.02404 * 26 25 23 48 48 H 1.09001 * 117.49798 * 214.97887 * 27 25 23 49 49 H 1.08996 * 117.50138 * 0.02562 * 27 25 23 50 50 H 1.08995 * 109.52418 * 297.70107 * 28 23 22 51 51 H 1.09002 * 109.52233 * 177.51394 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0747 1.5113 -2.0488 6 6 2.0270 3.3494 -1.5283 7 7 1.7146 3.9391 -2.6617 8 14 3.0002 4.2761 -0.2309 9 1 4.4526 4.0634 -0.4558 10 1 2.6922 5.7259 -0.3224 11 1 2.6296 3.7755 1.1172 12 6 1.9954 -0.7660 1.1376 13 6 3.4727 -1.0840 0.8984 14 1 4.0282 -0.1550 0.7697 15 8 3.6033 -1.8839 -0.2786 16 6 4.0306 -1.8497 2.0998 17 7 5.4753 -2.0503 1.9247 18 6 6.0467 -2.7835 3.0623 19 1 5.5342 -2.4912 3.9788 20 6 5.8776 -4.2894 2.8384 21 6 6.5451 -5.0464 3.9895 22 8 7.9236 -4.6774 4.0647 23 6 8.1425 -3.2885 4.3200 24 1 7.6677 -3.0127 5.2616 25 6 9.6456 -3.0166 4.4077 26 6 10.5930 -4.1531 4.0182 27 6 10.4356 -3.7573 5.4885 28 6 7.5393 -2.4607 3.1822 29 1 -0.3634 0.5375 0.8759 30 1 -0.3633 0.4899 -0.9035 31 1 -0.3634 -1.0273 0.0274 32 1 1.5611 1.9272 0.8310 33 1 3.0797 1.3443 0.1083 34 1 1.9892 4.8551 -2.8237 35 1 1.4355 -1.6957 1.2398 36 1 1.8933 -0.1783 2.0498 37 1 3.1333 -2.7278 -0.2347 38 1 3.8510 -1.2779 3.0103 39 1 3.5358 -2.8180 2.1752 40 1 5.6720 -2.5220 1.0546 41 1 4.8164 -4.5361 2.8071 42 1 6.3463 -4.5723 1.8960 43 1 6.0494 -4.7937 4.9267 44 1 6.4651 -6.1192 3.8136 45 1 9.9541 -1.9993 4.1669 46 1 10.1455 -5.0944 3.6992 47 1 11.5250 -3.8834 3.5215 48 1 11.2642 -3.2274 5.9585 49 1 9.8847 -4.4386 6.1368 50 1 8.0416 -2.7067 2.2467 51 1 7.6663 -1.3996 3.3968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515834007.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:53 Heat of formation + Delta-G solvation = -68.030587 kcal Electronic energy + Delta-G solvation = -26617.096596 eV Core-core repulsion = 22938.092642 eV Total energy + Delta-G solvation = -3679.003954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.19540 -38.37541 -37.09101 -36.09555 -35.21827 -32.42387 -31.99289 -31.18776 -29.40592 -27.94260 -26.08385 -24.51113 -23.83112 -22.99931 -22.63150 -21.61637 -20.76260 -20.44479 -19.92844 -17.00680 -16.92508 -16.44984 -16.20814 -15.94928 -15.50906 -15.13768 -15.04775 -14.74854 -14.63124 -14.34047 -14.08186 -13.73628 -13.38943 -13.20501 -13.07823 -12.61637 -12.33183 -12.25488 -12.17372 -11.80082 -11.73179 -11.56896 -11.52848 -11.32686 -11.22686 -11.07679 -10.83896 -10.77542 -10.61302 -10.48277 -10.37292 -10.16794 -9.89427 -9.80507 -9.57712 -9.19174 -8.52797 -8.50170 -7.33904 -6.01019 -3.97715 3.31180 3.31890 3.38565 3.39911 3.56417 3.82083 4.33460 4.42504 4.45546 4.57519 4.58858 4.66081 4.69707 4.76819 4.83727 4.91548 4.95562 5.10627 5.16448 5.20467 5.25156 5.31303 5.32310 5.36317 5.40368 5.48864 5.56616 5.57139 5.59452 5.69012 5.73213 5.83947 5.86395 5.90596 5.97425 6.01946 6.02485 6.23771 6.39179 6.66384 6.85136 6.89868 6.91933 6.99192 7.28547 7.62559 7.87524 8.03043 8.06268 8.69763 9.07797 9.60725 11.12264 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.002569 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.643967 B =10898.495933 C =11967.809204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.521 5.521 3 C 0.161 3.839 4 C -0.505 4.505 5 H 0.080 0.920 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.024 3.976 13 C 0.113 3.887 14 H 0.109 0.891 15 O -0.539 6.539 16 C 0.030 3.970 17 N -0.677 5.677 18 C 0.087 3.913 19 H 0.075 0.925 20 C -0.186 4.186 21 C 0.068 3.932 22 O -0.377 6.377 23 C 0.121 3.879 24 H 0.060 0.940 25 C -0.154 4.154 26 C -0.164 4.164 27 C -0.177 4.177 28 C -0.133 4.133 29 H 0.010 0.990 30 H 0.079 0.921 31 H 0.045 0.955 32 H -0.014 1.014 33 H 0.026 0.974 34 H 0.263 0.737 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.360 0.640 38 H 0.076 0.924 39 H 0.030 0.970 40 H 0.351 0.649 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.092 0.908 45 H 0.116 0.884 46 H 0.105 0.895 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.075 0.925 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.872 -19.026 17.640 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.245 5.245 3 C 0.035 3.965 4 C -0.543 4.543 5 H 0.098 0.902 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.106 4.106 13 C 0.053 3.947 14 H 0.127 0.873 15 O -0.342 6.342 16 C -0.100 4.100 17 N -0.308 5.308 18 C -0.024 4.024 19 H 0.093 0.907 20 C -0.226 4.226 21 C -0.010 4.010 22 O -0.297 6.297 23 C 0.063 3.937 24 H 0.078 0.922 25 C -0.172 4.172 26 C -0.201 4.201 27 C -0.214 4.214 28 C -0.171 4.171 29 H 0.029 0.971 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.003 0.997 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.205 0.795 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.171 0.829 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.134 0.866 46 H 0.123 0.877 47 H 0.108 0.892 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.093 0.907 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.711 -18.049 17.120 27.936 hybrid contribution -0.782 -0.085 1.477 1.673 sum 11.928 -18.134 18.597 28.583 Atomic orbital electron populations 1.22232 0.88179 0.99194 1.01326 1.61865 1.06965 1.16523 1.39147 1.20233 0.95067 0.83974 0.97207 1.21013 1.35448 0.97063 1.00826 0.90164 1.24898 0.95819 0.97392 0.95289 1.69893 1.47056 1.13265 1.23836 0.86884 0.81109 0.79231 0.82672 1.19990 1.21240 1.19409 1.22720 0.95945 0.98428 0.93518 1.21997 0.94631 0.94675 0.83375 0.87307 1.86715 1.75139 1.33331 1.39007 1.22714 0.88170 0.98950 1.00196 1.60438 1.12360 1.53125 1.04898 1.21620 0.95521 0.90287 0.94928 0.90665 1.22964 1.01433 0.97589 1.00585 1.22460 0.82174 0.99429 0.96919 1.87899 1.24420 1.24650 1.92697 1.21510 0.93726 0.81525 0.96894 0.92231 1.22311 0.91314 0.97965 1.05646 1.22855 1.00000 0.99866 0.97359 1.22948 1.02558 1.03681 0.92223 1.22150 0.94597 1.00791 0.99581 0.97100 0.90185 0.93616 0.99674 0.95634 0.92718 0.91870 0.95100 0.79452 0.90520 0.95211 0.82946 0.91081 0.90622 0.93343 0.88945 0.86589 0.87693 0.89165 0.88967 0.88781 0.90664 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.32 60.06 0.56 1.31 16 2 N -0.52 -10.93 4.60 -244.37 -1.12 -12.06 16 3 C 0.16 3.99 3.64 -4.98 -0.02 3.97 16 4 C -0.51 -14.67 9.09 -34.44 -0.31 -14.99 16 5 H 0.08 2.54 7.34 -52.48 -0.39 2.15 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 8 Si 0.87 21.94 27.47 -169.99 -4.67 17.27 16 9 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 12 C 0.02 0.38 4.63 -3.83 -0.02 0.37 16 13 C 0.11 1.72 3.23 -26.73 -0.09 1.64 16 14 H 0.11 2.02 6.55 -51.93 -0.34 1.68 16 15 O -0.54 -8.50 12.75 -35.23 -0.45 -8.95 16 16 C 0.03 0.34 5.16 -3.82 -0.02 0.32 16 17 N -0.68 -7.69 6.25 -106.52 -0.67 -8.36 16 18 C 0.09 0.81 2.55 -67.53 -0.17 0.64 16 19 H 0.08 0.70 7.81 -51.93 -0.41 0.30 16 20 C -0.19 -1.49 5.39 -26.59 -0.14 -1.64 16 21 C 0.07 0.51 6.84 37.20 0.25 0.77 16 22 O -0.38 -3.50 8.76 -35.23 -0.31 -3.81 16 23 C 0.12 1.04 3.00 -26.68 -0.08 0.96 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 C -0.15 -1.25 5.71 -90.62 -0.52 -1.77 16 26 C -0.16 -1.31 9.88 -26.70 -0.26 -1.58 16 27 C -0.18 -1.31 10.19 -26.69 -0.27 -1.58 16 28 C -0.13 -1.23 5.01 -26.59 -0.13 -1.37 16 29 H 0.01 0.20 8.13 -51.93 -0.42 -0.23 16 30 H 0.08 1.71 6.90 -51.92 -0.36 1.35 16 31 H 0.05 0.73 7.97 -51.93 -0.41 0.31 16 32 H -0.01 -0.36 7.17 -51.93 -0.37 -0.73 16 33 H 0.03 0.64 5.81 -51.93 -0.30 0.34 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.06 0.86 7.88 -51.93 -0.41 0.45 16 36 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 37 H 0.36 4.22 9.05 45.56 0.41 4.63 16 38 H 0.08 0.87 8.06 -51.93 -0.42 0.46 16 39 H 0.03 0.29 7.51 -51.93 -0.39 -0.10 16 40 H 0.35 4.09 8.01 -39.29 -0.31 3.78 16 41 H 0.07 0.53 7.55 -51.93 -0.39 0.14 16 42 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 43 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.12 0.87 8.11 -51.93 -0.42 0.45 16 46 H 0.10 0.94 7.07 -51.93 -0.37 0.57 16 47 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 394.15 15.07 5.94 5.94 Total: -1.00 -32.33 394.15 -10.51 -42.84 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -8.69 Total: 5.50 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -1.32 Total: -11.06 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -1.02 Total: -47.72 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.76 Total: -12.76 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.33 -10.51 -42.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515834007.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.189 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds