Wall clock time and date at job start Fri Apr 10 2020 18:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00317 * 2 1 4 4 C 1.50696 * 109.47273 * 293.95550 * 3 2 1 5 5 H 1.08005 * 119.99993 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99926 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00238 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00336 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47249 * 89.99192 * 8 6 4 10 10 H 1.48501 * 109.47575 * 209.99718 * 8 6 4 11 11 H 1.48503 * 109.46927 * 329.99526 * 8 6 4 12 12 C 1.46900 * 110.99867 * 123.95585 * 2 1 3 13 13 C 1.52995 * 109.47116 * 164.00952 * 12 2 1 14 14 H 1.09001 * 109.47206 * 58.50721 * 13 12 2 15 15 O 1.42901 * 109.47232 * 298.50855 * 13 12 2 16 16 C 1.53002 * 109.47311 * 178.51267 * 13 12 2 17 17 N 1.46902 * 109.47266 * 185.00416 * 16 13 12 18 18 C 1.46904 * 110.99818 * 179.97438 * 17 16 13 19 19 H 1.08997 * 109.54091 * 324.81873 * 18 17 16 20 20 C 1.53180 * 109.54251 * 84.99576 * 18 17 16 21 21 C 1.53092 * 109.15668 * 176.84515 * 20 18 17 22 22 O 1.42903 * 109.41925 * 302.38794 * 21 20 18 23 23 C 1.42898 * 114.09344 * 61.16329 * 22 21 20 24 24 H 1.08996 * 109.48403 * 58.82499 * 23 22 21 25 25 C 1.53003 * 109.48057 * 178.84977 * 23 22 21 26 26 C 1.52995 * 117.49675 * 8.74003 * 25 23 22 27 27 C 1.53004 * 117.49461 * 300.08285 * 25 23 22 28 28 C 1.53096 * 109.41471 * 298.83958 * 23 22 21 29 29 H 1.09000 * 109.47225 * 301.53297 * 1 2 3 30 30 H 1.09007 * 109.46621 * 61.52975 * 1 2 3 31 31 H 1.09001 * 109.47395 * 181.52699 * 1 2 3 32 32 H 1.09004 * 109.46377 * 53.95453 * 3 2 1 33 33 H 1.08992 * 109.47219 * 173.94849 * 3 2 1 34 34 H 0.96992 * 120.00502 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46881 * 44.00777 * 12 2 1 36 36 H 1.08998 * 109.47095 * 284.01373 * 12 2 1 37 37 H 0.96698 * 114.00134 * 299.99862 * 15 13 12 38 38 H 1.09005 * 109.46820 * 304.99871 * 16 13 12 39 39 H 1.09001 * 109.47141 * 64.99753 * 16 13 12 40 40 H 1.00903 * 110.99750 * 303.94825 * 17 16 13 41 41 H 1.08994 * 109.52445 * 296.75024 * 20 18 17 42 42 H 1.08996 * 109.51949 * 56.94075 * 20 18 17 43 43 H 1.08998 * 109.48256 * 62.37926 * 21 20 18 44 44 H 1.09007 * 109.47427 * 182.40795 * 21 20 18 45 45 H 1.08997 * 115.54864 * 154.41930 * 25 23 22 46 46 H 1.09000 * 117.50412 * 0.02562 * 26 25 23 47 47 H 1.09003 * 117.49624 * 145.02404 * 26 25 23 48 48 H 1.09001 * 117.49798 * 214.97887 * 27 25 23 49 49 H 1.08996 * 117.50138 * 0.02562 * 27 25 23 50 50 H 1.08995 * 109.52418 * 297.70107 * 28 23 22 51 51 H 1.09002 * 109.52233 * 177.51394 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0747 1.5113 -2.0488 6 6 2.0270 3.3494 -1.5283 7 7 1.7146 3.9391 -2.6617 8 14 3.0002 4.2761 -0.2309 9 1 4.4526 4.0634 -0.4558 10 1 2.6922 5.7259 -0.3224 11 1 2.6296 3.7755 1.1172 12 6 1.9954 -0.7660 1.1376 13 6 3.4727 -1.0840 0.8984 14 1 4.0282 -0.1550 0.7697 15 8 3.6033 -1.8839 -0.2786 16 6 4.0306 -1.8497 2.0998 17 7 5.4753 -2.0503 1.9247 18 6 6.0467 -2.7835 3.0623 19 1 5.5342 -2.4912 3.9788 20 6 5.8776 -4.2894 2.8384 21 6 6.5451 -5.0464 3.9895 22 8 7.9236 -4.6774 4.0647 23 6 8.1425 -3.2885 4.3200 24 1 7.6677 -3.0127 5.2616 25 6 9.6456 -3.0166 4.4077 26 6 10.5930 -4.1531 4.0182 27 6 10.4356 -3.7573 5.4885 28 6 7.5393 -2.4607 3.1822 29 1 -0.3634 0.5375 0.8759 30 1 -0.3633 0.4899 -0.9035 31 1 -0.3634 -1.0273 0.0274 32 1 1.5611 1.9272 0.8310 33 1 3.0797 1.3443 0.1083 34 1 1.9892 4.8551 -2.8237 35 1 1.4355 -1.6957 1.2398 36 1 1.8933 -0.1783 2.0498 37 1 3.1333 -2.7278 -0.2347 38 1 3.8510 -1.2779 3.0103 39 1 3.5358 -2.8180 2.1752 40 1 5.6720 -2.5220 1.0546 41 1 4.8164 -4.5361 2.8071 42 1 6.3463 -4.5723 1.8960 43 1 6.0494 -4.7937 4.9267 44 1 6.4651 -6.1192 3.8136 45 1 9.9541 -1.9993 4.1669 46 1 10.1455 -5.0944 3.6992 47 1 11.5250 -3.8834 3.5215 48 1 11.2642 -3.2274 5.9585 49 1 9.8847 -4.4386 6.1368 50 1 8.0416 -2.7067 2.2467 51 1 7.6663 -1.3996 3.3968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515834007.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:52 Heat of formation + Delta-G solvation = -93.471941 kcal Electronic energy + Delta-G solvation = -26618.199816 eV Core-core repulsion = 22938.092642 eV Total energy + Delta-G solvation = -3680.107174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87402 -39.57469 -37.93879 -37.21911 -36.25955 -34.59666 -32.89832 -31.83119 -30.71681 -29.79071 -27.18685 -25.63063 -24.72819 -24.26858 -23.22616 -22.80369 -21.74559 -21.30323 -21.10736 -19.06747 -17.66596 -17.48193 -17.14412 -16.98898 -16.44104 -16.27275 -16.08074 -15.90190 -15.82386 -15.41330 -15.30485 -14.80716 -14.74062 -14.47996 -14.15904 -14.00692 -13.74917 -13.29405 -13.12722 -12.95596 -12.88593 -12.62471 -12.41635 -12.40276 -12.39713 -12.26082 -12.17191 -11.89990 -11.86879 -11.66129 -11.48530 -11.44669 -11.22026 -11.03459 -10.77959 -10.75745 -10.35831 -9.31739 -8.96604 -8.28748 -6.31393 1.32632 1.34624 1.44177 2.33232 2.70828 2.83026 3.02163 3.05002 3.33806 3.68034 3.73174 3.75121 3.94343 4.00146 4.03247 4.08789 4.11228 4.15849 4.26019 4.31464 4.33584 4.42274 4.51178 4.53941 4.59690 4.60929 4.69070 4.70228 4.75818 4.81706 4.83839 4.89533 4.90355 4.96535 5.00521 5.09957 5.16684 5.17983 5.20324 5.26300 5.29683 5.38041 5.55377 5.96656 6.08948 6.29746 6.37329 6.41948 6.65585 6.74654 7.04062 7.31741 8.88106 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.002569 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.643967 B =10898.495933 C =11967.809204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.542 5.542 3 C 0.174 3.826 4 C -0.514 4.514 5 H 0.036 0.964 6 C 0.006 3.994 7 N -0.948 5.948 8 Si 0.946 3.054 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.251 1.251 12 C 0.025 3.975 13 C 0.119 3.881 14 H 0.070 0.930 15 O -0.561 6.561 16 C 0.044 3.956 17 N -0.692 5.692 18 C 0.089 3.911 19 H 0.080 0.920 20 C -0.178 4.178 21 C 0.064 3.936 22 O -0.391 6.391 23 C 0.124 3.876 24 H 0.065 0.935 25 C -0.163 4.163 26 C -0.170 4.170 27 C -0.169 4.169 28 C -0.128 4.128 29 H 0.018 0.982 30 H 0.044 0.956 31 H 0.083 0.917 32 H -0.015 1.015 33 H 0.024 0.976 34 H 0.267 0.733 35 H 0.097 0.903 36 H 0.038 0.962 37 H 0.379 0.621 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.347 0.653 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.104 0.896 45 H 0.120 0.880 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.105 0.895 49 H 0.092 0.908 50 H 0.060 0.940 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.414 -20.329 20.500 31.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.047 3.953 4 C -0.552 4.552 5 H 0.055 0.945 6 C -0.191 4.191 7 N -0.589 5.589 8 Si 0.769 3.231 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.175 1.175 12 C -0.104 4.104 13 C 0.059 3.941 14 H 0.088 0.912 15 O -0.367 6.367 16 C -0.086 4.086 17 N -0.323 5.323 18 C -0.021 4.021 19 H 0.099 0.901 20 C -0.217 4.217 21 C -0.013 4.013 22 O -0.310 6.310 23 C 0.066 3.934 24 H 0.083 0.917 25 C -0.181 4.181 26 C -0.207 4.207 27 C -0.206 4.206 28 C -0.167 4.167 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.003 0.997 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.057 0.943 37 H 0.227 0.773 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.166 0.834 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.122 0.878 45 H 0.138 0.862 46 H 0.112 0.888 47 H 0.116 0.884 48 H 0.123 0.877 49 H 0.111 0.889 50 H 0.079 0.921 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.239 -19.391 19.999 30.843 hybrid contribution -1.001 0.219 0.495 1.138 sum 12.238 -19.173 20.495 30.617 Atomic orbital electron populations 1.22195 0.87308 1.01255 0.99832 1.61727 1.07984 1.14573 1.42314 1.19931 0.94945 0.86010 0.94437 1.21273 1.34695 0.97387 1.01863 0.94542 1.25857 0.97043 0.98510 0.97718 1.70050 1.48734 1.13913 1.26248 0.85740 0.79405 0.77775 0.80191 1.19246 1.20446 1.17470 1.22842 0.96699 0.99061 0.91780 1.21822 0.93727 0.93891 0.84707 0.91193 1.86668 1.75743 1.34555 1.39721 1.22512 0.88288 0.99580 0.98212 1.60410 1.12488 1.53999 1.05410 1.21623 0.95170 0.91005 0.94260 0.90144 1.22873 1.02037 0.96505 1.00316 1.22600 0.81418 1.00092 0.97166 1.87894 1.25555 1.24842 1.92753 1.21491 0.94016 0.81226 0.96626 0.91688 1.22389 0.91206 0.98207 1.06314 1.22852 1.00281 0.99389 0.98154 1.22992 1.02579 1.03254 0.91797 1.22091 0.94779 1.00560 0.99239 0.96393 0.93751 0.89833 0.99745 0.95810 0.92454 0.88427 0.94345 0.77340 0.90015 0.92686 0.83352 0.89989 0.91606 0.92282 0.87751 0.86192 0.88826 0.88440 0.87713 0.88941 0.92081 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 9.32 127.69 1.19 2.76 16 2 N -0.54 -22.23 4.60 -927.05 -4.27 -26.49 16 3 C 0.17 8.57 3.64 85.56 0.31 8.88 16 4 C -0.51 -30.75 9.09 25.60 0.23 -30.52 16 5 H 0.04 2.43 7.34 -2.91 -0.02 2.41 16 6 C 0.01 0.34 5.47 84.65 0.46 0.81 16 7 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 8 Si 0.95 45.44 27.47 68.60 1.88 47.33 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 12 C 0.02 0.74 4.63 86.30 0.40 1.14 16 13 C 0.12 3.40 3.23 30.59 0.10 3.50 16 14 H 0.07 2.57 6.55 -2.39 -0.02 2.55 16 15 O -0.56 -16.93 12.75 -148.98 -1.90 -18.83 16 16 C 0.04 0.89 5.16 86.30 0.45 1.33 16 17 N -0.69 -14.57 6.25 -490.93 -3.07 -17.64 16 18 C 0.09 1.49 2.55 45.03 0.11 1.60 16 19 H 0.08 1.28 7.81 -2.39 -0.02 1.26 16 20 C -0.18 -2.45 5.39 30.68 0.17 -2.28 16 21 C 0.06 0.82 6.84 72.01 0.49 1.32 16 22 O -0.39 -6.68 8.76 -148.98 -1.31 -7.98 16 23 C 0.12 1.97 3.00 30.63 0.09 2.06 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 C -0.16 -2.46 5.71 -10.79 -0.06 -2.52 16 26 C -0.17 -2.57 9.88 30.62 0.30 -2.27 16 27 C -0.17 -2.25 10.19 30.62 0.31 -1.94 16 28 C -0.13 -2.26 5.01 30.69 0.15 -2.10 16 29 H 0.02 0.63 8.13 -2.39 -0.02 0.61 16 30 H 0.04 1.94 6.90 -2.38 -0.02 1.92 16 31 H 0.08 2.44 7.97 -2.39 -0.02 2.42 16 32 H -0.02 -0.73 7.17 -2.38 -0.02 -0.75 16 33 H 0.02 1.19 5.81 -2.39 -0.01 1.17 16 34 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 35 H 0.10 2.23 7.88 -2.38 -0.02 2.22 16 36 H 0.04 1.11 8.05 -2.39 -0.02 1.09 16 37 H 0.38 7.97 9.05 -74.06 -0.67 7.30 16 38 H 0.08 1.60 8.06 -2.38 -0.02 1.58 16 39 H 0.06 0.86 7.51 -2.39 -0.02 0.84 16 40 H 0.35 7.70 8.01 -89.69 -0.72 6.98 16 41 H 0.08 0.96 7.55 -2.39 -0.02 0.94 16 42 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 43 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.12 1.68 8.11 -2.39 -0.02 1.66 16 46 H 0.09 1.63 7.07 -2.39 -0.02 1.62 16 47 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -72.05 394.15 -4.18 -76.23 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -0.54 Total: 26.17 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 4.71 Total: -18.23 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -7.04 Total: -104.69 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -3.20 Total: -26.81 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.33 kcal Total: -72.05 -4.18 -76.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515834007.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.240 kcal (2) G-P(sol) polarization free energy of solvation -72.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds