Wall clock time and date at job start Fri Apr 10 2020 18:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46362 * 2 1 4 4 C 1.52993 * 109.47335 * 120.00280 * 2 1 3 5 5 C 1.50696 * 109.47122 * 185.48689 * 4 2 1 6 6 H 1.08003 * 120.00022 * 5.01267 * 5 4 2 7 7 C 1.37880 * 120.00214 * 185.01424 * 5 4 2 8 8 N 1.31511 * 119.99720 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00205 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46912 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47063 * 119.99865 * 9 7 5 12 12 H 1.48504 * 109.47086 * 240.00389 * 9 7 5 13 13 N 1.46897 * 109.46509 * 240.00685 * 2 1 3 14 14 C 1.46851 * 111.00133 * 307.51382 * 13 2 1 15 15 C 1.53031 * 109.51586 * 185.85244 * 14 13 2 16 16 C 1.53121 * 109.27910 * 300.80417 * 15 14 13 17 17 O 1.42898 * 109.53284 * 297.76944 * 16 15 14 18 18 C 1.53004 * 109.52514 * 177.57066 * 16 15 14 19 19 N 1.46899 * 109.47135 * 186.75613 * 18 16 15 20 20 C 1.47008 * 110.99880 * 285.98291 * 19 18 16 21 21 C 1.53100 * 109.25883 * 177.61120 * 20 19 18 22 22 O 1.43017 * 109.25945 * 56.84224 * 21 20 19 23 23 C 1.43014 * 113.73838 * 301.33673 * 22 21 20 24 24 C 1.47007 * 110.99932 * 162.34629 * 19 18 16 25 25 C 1.53118 * 109.15136 * 57.67150 * 16 15 14 26 26 C 1.46843 * 111.00515 * 71.73171 * 13 2 1 27 27 H 1.09010 * 109.47085 * 299.99510 * 1 2 3 28 28 H 1.08996 * 109.47520 * 59.99490 * 1 2 3 29 29 H 1.09000 * 109.47074 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46949 * 305.48762 * 4 2 1 31 31 H 1.09003 * 109.47509 * 65.48665 * 4 2 1 32 32 H 0.96998 * 119.99924 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46342 * 305.86542 * 14 13 2 34 34 H 1.08997 * 109.45864 * 65.83786 * 14 13 2 35 35 H 1.09000 * 109.51006 * 60.75664 * 15 14 13 36 36 H 1.09002 * 109.50281 * 180.87703 * 15 14 13 37 37 H 0.96698 * 114.00094 * 59.67497 * 17 16 15 38 38 H 1.08998 * 109.46733 * 306.76024 * 18 16 15 39 39 H 1.08997 * 109.46553 * 66.75629 * 18 16 15 40 40 H 1.09000 * 109.50833 * 297.54229 * 20 19 18 41 41 H 1.09001 * 109.51503 * 57.67466 * 20 19 18 42 42 H 1.09005 * 109.50404 * 296.91286 * 21 20 19 43 43 H 1.09001 * 109.51178 * 176.78564 * 21 20 19 44 44 H 1.09001 * 109.50384 * 298.73212 * 23 22 21 45 45 H 1.08999 * 109.53844 * 178.62585 * 23 22 21 46 46 H 1.09004 * 109.50698 * 302.32640 * 24 19 18 47 47 H 1.08999 * 109.50577 * 62.45650 * 24 19 18 48 48 H 1.08996 * 109.50804 * 182.40080 * 25 16 15 49 49 H 1.09006 * 109.50294 * 62.27999 * 25 16 15 50 50 H 1.08999 * 109.45722 * 294.17063 * 26 13 2 51 51 H 1.08991 * 109.46604 * 54.15094 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5409 -0.6047 1.3189 6 1 4.0699 -0.0024 0.5952 7 6 4.2387 -1.2670 2.3066 8 7 3.5945 -2.0008 3.1875 9 14 6.0991 -1.1230 2.3926 10 1 6.5791 -0.2465 1.2942 11 1 6.4904 -0.5380 3.7002 12 1 6.7069 -2.4706 2.2514 13 7 2.0195 -0.6924 -1.1995 14 6 1.4078 -2.0213 -1.3266 15 6 2.0464 -2.7680 -2.4998 16 6 1.8359 -1.9638 -3.7857 17 8 0.4369 -1.8488 -4.0537 18 6 2.5245 -2.6752 -4.9523 19 7 2.4614 -1.8262 -6.1495 20 6 1.1058 -1.8173 -6.7181 21 6 1.0707 -0.8763 -7.9252 22 8 2.0543 -1.2924 -8.8765 23 6 3.3863 -1.3121 -8.3562 24 6 3.4447 -2.2576 -7.1535 25 6 2.4395 -0.5677 -3.6096 26 6 1.7898 0.1154 -2.4041 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.5987 -0.2673 2.1364 31 1 1.7592 -1.7734 1.2014 32 1 4.0853 -2.4664 3.8826 33 1 1.5681 -2.5844 -0.4072 34 1 0.3378 -1.9130 -1.5042 35 1 3.1141 -2.8887 -2.3167 36 1 1.5814 -3.7484 -2.6037 37 1 -0.0629 -1.4087 -3.3526 38 1 3.5667 -2.8665 -4.6969 39 1 2.0195 -3.6206 -5.1502 40 1 0.8371 -2.8252 -7.0345 41 1 0.3975 -1.4705 -5.9656 42 1 1.2869 0.1414 -7.5998 43 1 0.0828 -0.9100 -8.3846 44 1 3.6697 -0.3072 -8.0433 45 1 4.0736 -1.6607 -9.1270 46 1 4.4440 -2.2321 -6.7188 47 1 3.2135 -3.2725 -7.4769 48 1 2.2554 0.0241 -4.5062 49 1 3.5135 -0.6539 -3.4439 50 1 0.7180 0.2136 -2.5765 51 1 2.2277 1.1041 -2.2675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565043791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:13 Heat of formation + Delta-G solvation = -86.992109 kcal Electronic energy + Delta-G solvation = -28330.303594 eV Core-core repulsion = 24650.477407 eV Total energy + Delta-G solvation = -3679.826187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.26483 -39.23097 -36.94666 -35.29729 -33.35780 -32.20388 -31.30430 -30.70806 -30.12215 -27.78725 -27.27362 -25.10451 -24.14449 -23.25482 -22.85618 -21.71506 -20.52319 -19.68680 -18.67835 -17.01213 -16.58999 -16.24250 -16.17255 -15.62059 -15.29512 -15.11801 -15.02207 -14.63247 -14.51828 -14.13494 -13.83061 -13.49438 -13.38335 -12.90990 -12.81942 -12.54440 -12.26961 -11.95777 -11.77826 -11.75220 -11.56622 -11.47550 -11.34043 -11.14724 -11.05730 -11.02045 -10.91544 -10.67716 -10.55144 -10.41424 -10.11714 -9.99314 -9.71452 -9.44362 -9.15072 -8.95559 -8.47665 -8.27331 -7.46718 -5.90080 -3.87519 3.36706 3.44419 3.49702 3.56724 3.73752 4.23837 4.49376 4.55780 4.66358 4.81492 4.86690 4.95107 5.00058 5.05867 5.12768 5.17343 5.38296 5.45453 5.47826 5.48563 5.50709 5.57130 5.59623 5.66261 5.71125 5.75898 5.78250 5.84258 5.93551 6.00454 6.03091 6.06786 6.18590 6.32444 6.40823 6.44527 6.53042 6.59977 6.69906 6.83900 6.85317 6.97662 6.98321 7.51420 7.66614 7.69738 7.90416 8.01709 8.11056 8.56545 9.17959 9.74023 11.21942 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.019201 B = 0.003403 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.941521 B = 8225.353352 C = 9004.667439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.068 0.932 4 C 0.030 3.970 5 C -0.487 4.487 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.509 5.509 14 C 0.057 3.943 15 C -0.140 4.140 16 C 0.141 3.859 17 O -0.561 6.561 18 C 0.072 3.928 19 N -0.528 5.528 20 C 0.013 3.987 21 C 0.063 3.937 22 O -0.391 6.391 23 C 0.065 3.935 24 C 0.015 3.985 25 C -0.124 4.124 26 C 0.049 3.951 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.014 0.986 31 H 0.022 0.978 32 H 0.256 0.744 33 H 0.090 0.910 34 H 0.022 0.978 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.371 0.629 38 H 0.087 0.913 39 H 0.041 0.959 40 H 0.034 0.966 41 H 0.117 0.883 42 H 0.057 0.943 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.039 0.961 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.021 0.979 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.107 0.478 -19.994 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.525 4.525 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.232 5.232 14 C -0.071 4.071 15 C -0.179 4.179 16 C 0.101 3.899 17 O -0.370 6.370 18 C -0.056 4.056 19 N -0.253 5.253 20 C -0.115 4.115 21 C -0.014 4.014 22 O -0.309 6.309 23 C -0.012 4.012 24 C -0.114 4.114 25 C -0.162 4.162 26 C -0.079 4.079 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.040 0.960 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.220 0.780 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.135 0.865 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.112 0.888 46 H 0.103 0.897 47 H 0.057 0.943 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.038 0.962 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.305 0.436 -20.401 20.855 hybrid contribution -0.054 -0.466 0.753 0.887 sum -4.359 -0.030 -19.649 20.126 Atomic orbital electron populations 1.22532 0.99821 1.01279 1.00677 1.21913 0.89965 0.98273 0.91954 0.91366 1.19198 0.96344 0.95530 0.89666 1.21175 0.91830 1.28097 1.11439 0.92282 1.24993 0.97987 0.95828 0.96078 1.69968 1.35134 1.32405 1.17008 0.86591 0.86497 0.77612 0.77600 1.19800 1.21429 1.21358 1.62023 1.58144 1.01780 1.01302 1.22042 0.94442 0.91522 0.99106 1.22224 1.03155 0.98385 0.94093 1.21226 0.80790 0.95084 0.92850 1.86391 1.19780 1.82686 1.48127 1.22118 1.00443 0.93830 0.89191 1.62160 1.05178 1.52412 1.05546 1.23078 0.91611 0.98873 0.97934 1.22722 0.92095 0.97513 0.89104 1.87954 1.16404 1.88734 1.37854 1.22624 0.84278 0.99182 0.95088 1.22803 0.97377 0.97636 0.93540 1.22033 1.01236 0.95568 0.97345 1.22143 0.97182 0.97637 0.90982 0.92559 0.94225 0.92835 0.96767 0.95940 0.93400 0.89144 0.95975 0.89943 0.91651 0.77989 0.89478 0.94082 0.94788 0.86500 0.92425 0.88832 0.92276 0.88759 0.89663 0.94279 0.90414 0.90646 0.96150 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 8.42 37.16 0.31 -2.68 16 2 C 0.09 1.69 2.24 -67.72 -0.15 1.54 16 3 H 0.07 1.37 7.95 -51.93 -0.41 0.96 16 4 C 0.03 0.73 4.40 -27.89 -0.12 0.61 16 5 C -0.49 -13.37 8.85 -34.44 -0.30 -13.67 16 6 H 0.06 1.63 7.75 -52.48 -0.41 1.22 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 N -0.51 -8.98 4.32 -226.70 -0.98 -9.96 16 14 C 0.06 0.93 4.27 -3.83 -0.02 0.91 16 15 C -0.14 -1.98 5.10 -26.65 -0.14 -2.12 16 16 C 0.14 1.76 0.86 -90.49 -0.08 1.68 16 17 O -0.56 -6.81 9.98 -35.23 -0.35 -7.16 16 18 C 0.07 0.83 4.35 -3.82 -0.02 0.82 16 19 N -0.53 -5.81 3.69 -234.32 -0.86 -6.67 16 20 C 0.01 0.14 5.31 -3.71 -0.02 0.12 16 21 C 0.06 0.62 7.01 37.21 0.26 0.88 16 22 O -0.39 -4.40 10.83 -35.23 -0.38 -4.78 16 23 C 0.07 0.60 7.01 37.20 0.26 0.86 16 24 C 0.01 0.14 5.61 -3.72 -0.02 0.12 16 25 C -0.12 -1.64 4.83 -26.65 -0.13 -1.76 16 26 C 0.05 0.71 4.93 -3.83 -0.02 0.69 16 27 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 28 H 0.04 0.56 6.88 -51.93 -0.36 0.20 16 29 H 0.05 0.86 6.45 -51.93 -0.33 0.53 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.59 6.27 -51.93 -0.33 0.26 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.09 1.76 6.19 -51.93 -0.32 1.44 16 34 H 0.02 0.33 5.27 -51.93 -0.27 0.06 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.37 4.19 5.86 45.56 0.27 4.46 16 38 H 0.09 0.96 7.89 -51.93 -0.41 0.55 16 39 H 0.04 0.49 8.02 -51.93 -0.42 0.08 16 40 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.12 1.35 5.29 -51.93 -0.27 1.08 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 47 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 1.00 7.54 -51.93 -0.39 0.61 16 49 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.02 0.28 5.64 -51.93 -0.29 -0.02 16 51 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -29.83 372.50 -10.09 -39.92 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -8.57 Total: 3.10 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.28 Total: -10.68 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -1.11 Total: -42.82 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.73 Total: -11.95 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.83 -10.09 -39.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565043791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.067 kcal (2) G-P(sol) polarization free energy of solvation -29.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds