Wall clock time and date at job start Fri Apr 10 2020 18:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46362 * 2 1 4 4 C 1.52993 * 109.47335 * 120.00280 * 2 1 3 5 5 C 1.50696 * 109.47122 * 185.48689 * 4 2 1 6 6 H 1.08003 * 120.00022 * 5.01267 * 5 4 2 7 7 C 1.37880 * 120.00214 * 185.01424 * 5 4 2 8 8 N 1.31511 * 119.99720 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00205 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46912 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47063 * 119.99865 * 9 7 5 12 12 H 1.48504 * 109.47086 * 240.00389 * 9 7 5 13 13 N 1.46897 * 109.46509 * 240.00685 * 2 1 3 14 14 C 1.46851 * 111.00133 * 307.51382 * 13 2 1 15 15 C 1.53031 * 109.51586 * 185.85244 * 14 13 2 16 16 C 1.53121 * 109.27910 * 300.80417 * 15 14 13 17 17 O 1.42898 * 109.53284 * 297.76944 * 16 15 14 18 18 C 1.53004 * 109.52514 * 177.57066 * 16 15 14 19 19 N 1.46899 * 109.47135 * 186.75613 * 18 16 15 20 20 C 1.47008 * 110.99880 * 285.98291 * 19 18 16 21 21 C 1.53100 * 109.25883 * 177.61120 * 20 19 18 22 22 O 1.43017 * 109.25945 * 56.84224 * 21 20 19 23 23 C 1.43014 * 113.73838 * 301.33673 * 22 21 20 24 24 C 1.47007 * 110.99932 * 162.34629 * 19 18 16 25 25 C 1.53118 * 109.15136 * 57.67150 * 16 15 14 26 26 C 1.46843 * 111.00515 * 71.73171 * 13 2 1 27 27 H 1.09010 * 109.47085 * 299.99510 * 1 2 3 28 28 H 1.08996 * 109.47520 * 59.99490 * 1 2 3 29 29 H 1.09000 * 109.47074 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46949 * 305.48762 * 4 2 1 31 31 H 1.09003 * 109.47509 * 65.48665 * 4 2 1 32 32 H 0.96998 * 119.99924 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46342 * 305.86542 * 14 13 2 34 34 H 1.08997 * 109.45864 * 65.83786 * 14 13 2 35 35 H 1.09000 * 109.51006 * 60.75664 * 15 14 13 36 36 H 1.09002 * 109.50281 * 180.87703 * 15 14 13 37 37 H 0.96698 * 114.00094 * 59.67497 * 17 16 15 38 38 H 1.08998 * 109.46733 * 306.76024 * 18 16 15 39 39 H 1.08997 * 109.46553 * 66.75629 * 18 16 15 40 40 H 1.09000 * 109.50833 * 297.54229 * 20 19 18 41 41 H 1.09001 * 109.51503 * 57.67466 * 20 19 18 42 42 H 1.09005 * 109.50404 * 296.91286 * 21 20 19 43 43 H 1.09001 * 109.51178 * 176.78564 * 21 20 19 44 44 H 1.09001 * 109.50384 * 298.73212 * 23 22 21 45 45 H 1.08999 * 109.53844 * 178.62585 * 23 22 21 46 46 H 1.09004 * 109.50698 * 302.32640 * 24 19 18 47 47 H 1.08999 * 109.50577 * 62.45650 * 24 19 18 48 48 H 1.08996 * 109.50804 * 182.40080 * 25 16 15 49 49 H 1.09006 * 109.50294 * 62.27999 * 25 16 15 50 50 H 1.08999 * 109.45722 * 294.17063 * 26 13 2 51 51 H 1.08991 * 109.46604 * 54.15094 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5409 -0.6047 1.3189 6 1 4.0699 -0.0024 0.5952 7 6 4.2387 -1.2670 2.3066 8 7 3.5945 -2.0008 3.1875 9 14 6.0991 -1.1230 2.3926 10 1 6.5791 -0.2465 1.2942 11 1 6.4904 -0.5380 3.7002 12 1 6.7069 -2.4706 2.2514 13 7 2.0195 -0.6924 -1.1995 14 6 1.4078 -2.0213 -1.3266 15 6 2.0464 -2.7680 -2.4998 16 6 1.8359 -1.9638 -3.7857 17 8 0.4369 -1.8488 -4.0537 18 6 2.5245 -2.6752 -4.9523 19 7 2.4614 -1.8262 -6.1495 20 6 1.1058 -1.8173 -6.7181 21 6 1.0707 -0.8763 -7.9252 22 8 2.0543 -1.2924 -8.8765 23 6 3.3863 -1.3121 -8.3562 24 6 3.4447 -2.2576 -7.1535 25 6 2.4395 -0.5677 -3.6096 26 6 1.7898 0.1154 -2.4041 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.5987 -0.2673 2.1364 31 1 1.7592 -1.7734 1.2014 32 1 4.0853 -2.4664 3.8826 33 1 1.5681 -2.5844 -0.4072 34 1 0.3378 -1.9130 -1.5042 35 1 3.1141 -2.8887 -2.3167 36 1 1.5814 -3.7484 -2.6037 37 1 -0.0629 -1.4087 -3.3526 38 1 3.5667 -2.8665 -4.6969 39 1 2.0195 -3.6206 -5.1502 40 1 0.8371 -2.8252 -7.0345 41 1 0.3975 -1.4705 -5.9656 42 1 1.2869 0.1414 -7.5998 43 1 0.0828 -0.9100 -8.3846 44 1 3.6697 -0.3072 -8.0433 45 1 4.0736 -1.6607 -9.1270 46 1 4.4440 -2.2321 -6.7188 47 1 3.2135 -3.2725 -7.4769 48 1 2.2554 0.0241 -4.5062 49 1 3.5135 -0.6539 -3.4439 50 1 0.7180 0.2136 -2.5765 51 1 2.2277 1.1041 -2.2675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565043791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:12 Heat of formation + Delta-G solvation = -108.327865 kcal Electronic energy + Delta-G solvation = -28331.228782 eV Core-core repulsion = 24650.477407 eV Total energy + Delta-G solvation = -3680.751375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31794 -40.18224 -38.17471 -36.22518 -35.06751 -33.78897 -32.07227 -31.94247 -31.36711 -29.28417 -28.65310 -26.16437 -25.09231 -24.91723 -24.08316 -22.93785 -21.37848 -20.93831 -20.00674 -18.34477 -18.04704 -17.45944 -17.02317 -16.87773 -16.47871 -16.26816 -15.98066 -15.86312 -15.74571 -15.37038 -14.97602 -14.67268 -14.63217 -14.21686 -13.92800 -13.87497 -13.53829 -13.47995 -13.17505 -12.97735 -12.82793 -12.58156 -12.52454 -12.39779 -12.38292 -12.29444 -12.21747 -12.05104 -12.00800 -11.77890 -11.53906 -11.23864 -11.06007 -10.89425 -10.66571 -10.48033 -10.37324 -9.33843 -8.82505 -8.08756 -6.12820 1.41039 1.42486 1.55061 2.48108 2.74383 2.99557 3.11983 3.27724 3.30516 3.74570 3.90721 3.93078 4.02304 4.10487 4.19542 4.23751 4.24731 4.32743 4.40989 4.41383 4.45452 4.46605 4.60127 4.63342 4.66241 4.68487 4.74200 4.80756 4.89357 4.91967 4.96326 5.04371 5.06633 5.07840 5.15378 5.21136 5.25718 5.32117 5.38279 5.46168 5.53268 5.72511 5.91828 5.98370 6.03142 6.22501 6.35208 6.51431 6.57946 6.75853 7.01094 7.52713 9.03371 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.019201 B = 0.003403 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.941521 B = 8225.353352 C = 9004.667439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.062 0.938 4 C 0.035 3.965 5 C -0.494 4.494 6 H 0.055 0.945 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.954 3.046 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.529 5.529 14 C 0.063 3.937 15 C -0.134 4.134 16 C 0.153 3.847 17 O -0.559 6.559 18 C 0.075 3.925 19 N -0.532 5.532 20 C 0.017 3.983 21 C 0.063 3.937 22 O -0.408 6.408 23 C 0.064 3.936 24 C 0.015 3.985 25 C -0.112 4.112 26 C 0.052 3.948 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.052 0.948 30 H -0.013 1.013 31 H -0.001 1.001 32 H 0.257 0.743 33 H 0.050 0.950 34 H 0.042 0.958 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.376 0.624 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.023 0.977 41 H 0.113 0.887 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.113 0.887 46 H 0.096 0.904 47 H 0.034 0.966 48 H 0.087 0.913 49 H 0.061 0.939 50 H 0.041 0.959 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.002 1.187 -22.110 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 H 0.080 0.920 4 C -0.002 4.002 5 C -0.532 4.532 6 H 0.074 0.926 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.254 5.254 14 C -0.065 4.065 15 C -0.173 4.173 16 C 0.112 3.888 17 O -0.368 6.368 18 C -0.053 4.053 19 N -0.257 5.257 20 C -0.111 4.111 21 C -0.013 4.013 22 O -0.327 6.327 23 C -0.013 4.013 24 C -0.113 4.113 25 C -0.150 4.150 26 C -0.076 4.076 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.006 0.994 31 H 0.018 0.982 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.226 0.774 38 H 0.109 0.891 39 H 0.055 0.945 40 H 0.041 0.959 41 H 0.131 0.869 42 H 0.078 0.922 43 H 0.126 0.874 44 H 0.079 0.921 45 H 0.131 0.869 46 H 0.114 0.886 47 H 0.053 0.947 48 H 0.106 0.894 49 H 0.079 0.921 50 H 0.059 0.941 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.205 1.156 -22.535 22.953 hybrid contribution -0.104 -0.689 1.414 1.576 sum -4.309 0.468 -21.121 21.561 Atomic orbital electron populations 1.22389 0.97102 1.01682 1.02068 1.21590 0.92105 0.97006 0.90602 0.91976 1.19060 0.95087 0.94561 0.91479 1.21489 0.93367 1.27422 1.10948 0.92639 1.25816 1.02673 0.95683 0.95890 1.70095 1.36929 1.33493 1.17785 0.85561 0.80954 0.77683 0.77797 1.18921 1.20959 1.21028 1.61884 1.59077 1.02546 1.01869 1.21919 0.95787 0.90674 0.98135 1.22163 1.01966 0.98924 0.94236 1.21053 0.81185 0.94356 0.92246 1.86418 1.19361 1.82731 1.48260 1.22054 1.00474 0.93592 0.89206 1.62166 1.05567 1.52225 1.05722 1.23025 0.91417 0.98486 0.98137 1.22784 0.92668 0.97194 0.88676 1.87936 1.17306 1.88839 1.38607 1.22760 0.83862 0.99230 0.95431 1.22860 0.97502 0.97514 0.93464 1.21927 1.00218 0.95938 0.96957 1.22165 0.98557 0.97004 0.89828 0.92719 0.91244 0.92894 0.99446 0.98238 0.93376 0.93115 0.93985 0.91549 0.90754 0.77412 0.89103 0.94460 0.95868 0.86943 0.92210 0.87439 0.92100 0.86896 0.88584 0.94720 0.89415 0.92061 0.94115 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.40 8.42 71.98 0.61 -4.80 16 2 C 0.10 3.70 2.24 44.91 0.10 3.80 16 3 H 0.06 2.47 7.95 -2.39 -0.02 2.45 16 4 C 0.04 1.80 4.40 29.84 0.13 1.93 16 5 C -0.49 -27.68 8.85 25.60 0.23 -27.46 16 6 H 0.06 3.09 7.75 -2.91 -0.02 3.07 16 7 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 8 N -0.94 -57.42 13.29 21.45 0.28 -57.14 16 9 Si 0.95 45.24 29.54 68.60 2.03 47.27 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 N -0.53 -18.41 4.32 -871.15 -3.76 -22.17 16 14 C 0.06 2.03 4.27 86.32 0.37 2.40 16 15 C -0.13 -3.71 5.10 30.64 0.16 -3.55 16 16 C 0.15 3.52 0.86 -10.71 -0.01 3.51 16 17 O -0.56 -12.15 9.98 -148.98 -1.49 -13.63 16 18 C 0.07 1.60 4.35 86.30 0.38 1.98 16 19 N -0.53 -10.64 3.69 -895.25 -3.30 -13.95 16 20 C 0.02 0.34 5.31 86.32 0.46 0.80 16 21 C 0.06 1.13 7.01 72.02 0.50 1.63 16 22 O -0.41 -8.37 10.83 -148.98 -1.61 -9.99 16 23 C 0.06 1.04 7.01 72.01 0.50 1.54 16 24 C 0.01 0.25 5.61 86.31 0.48 0.74 16 25 C -0.11 -2.75 4.83 30.65 0.15 -2.60 16 26 C 0.05 1.41 4.93 86.33 0.43 1.84 16 27 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.07 1.75 6.88 -2.39 -0.02 1.74 16 29 H 0.05 1.65 6.45 -2.39 -0.02 1.63 16 30 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H 0.00 -0.04 6.27 -2.39 -0.01 -0.05 16 32 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 33 H 0.05 2.05 6.19 -2.39 -0.01 2.03 16 34 H 0.04 1.18 5.27 -2.39 -0.01 1.17 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.38 7.33 5.86 -74.06 -0.43 6.89 16 38 H 0.09 1.87 7.89 -2.39 -0.02 1.86 16 39 H 0.04 0.84 8.02 -2.39 -0.02 0.82 16 40 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.11 2.34 5.29 -2.39 -0.01 2.33 16 42 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.10 1.45 8.03 -2.39 -0.02 1.43 16 47 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.09 2.02 7.54 -2.39 -0.02 2.01 16 49 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 50 H 0.04 0.96 5.64 -2.39 -0.01 0.94 16 51 H 0.07 1.90 8.00 -2.39 -0.02 1.88 16 Total: -1.00 -64.77 372.50 -2.44 -67.22 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.47 Total: 20.44 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 4.94 Total: -18.06 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -6.78 Total: -93.25 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -3.10 Total: -23.62 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -64.77 -2.44 -67.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565043791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.113 kcal (2) G-P(sol) polarization free energy of solvation -64.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds