Wall clock time and date at job start Fri Apr 10 2020 18:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99783 * 2 1 4 4 O 1.20831 * 120.00242 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00138 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47324 * 179.97438 * 5 3 2 7 7 C 1.34779 * 120.00165 * 179.97438 * 6 5 3 8 8 O 1.21282 * 119.99927 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00033 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 6 11 11 N 1.46902 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.46852 * 110.99931 * 294.20338 * 11 10 9 13 13 C 1.53038 * 109.52166 * 174.16462 * 12 11 10 14 14 C 1.53111 * 109.27933 * 59.17985 * 13 12 11 15 15 C 1.52999 * 109.57722 * 182.40588 * 14 13 12 16 16 C 1.50695 * 109.47441 * 294.72228 * 15 14 13 17 17 H 1.08002 * 119.99692 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00172 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00061 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99936 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47214 * 60.00068 * 20 18 16 22 22 H 1.48501 * 109.46918 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47324 * 299.99688 * 20 18 16 24 24 C 1.53113 * 109.16361 * 302.34846 * 14 13 12 25 25 C 1.46845 * 110.99560 * 170.00278 * 11 10 9 26 26 H 1.09006 * 109.46877 * 60.00794 * 1 2 3 27 27 H 1.09005 * 109.46871 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47911 * 300.00281 * 1 2 3 29 29 H 1.08996 * 109.47197 * 59.99640 * 5 3 2 30 30 H 1.09004 * 109.47476 * 299.99997 * 5 3 2 31 31 H 0.96996 * 119.99985 * 0.02562 * 6 5 3 32 32 H 1.08993 * 109.47512 * 60.00410 * 9 7 6 33 33 H 1.09000 * 109.47247 * 300.00119 * 9 7 6 34 34 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 35 35 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 36 36 H 1.08996 * 109.46717 * 294.18527 * 12 11 10 37 37 H 1.09002 * 109.45810 * 54.15580 * 12 11 10 38 38 H 1.09009 * 109.50306 * 299.24202 * 13 12 11 39 39 H 1.09000 * 109.50216 * 179.12976 * 13 12 11 40 40 H 1.09011 * 109.52176 * 62.25284 * 14 13 12 41 41 H 1.09002 * 109.46686 * 54.71900 * 15 14 13 42 42 H 1.09001 * 109.47140 * 174.71494 * 15 14 13 43 43 H 0.97000 * 120.00268 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.50089 * 297.70933 * 24 14 13 45 45 H 1.09004 * 109.50328 * 177.59242 * 24 14 13 46 46 H 1.09000 * 109.46228 * 305.85144 * 25 11 10 47 47 H 1.09001 * 109.47085 * 65.82947 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 5.2919 2.9952 0.0007 8 8 6.1273 2.1159 0.0016 9 6 5.7191 4.4404 -0.0006 10 6 7.2471 4.5205 0.0001 11 7 7.6635 5.9293 -0.0006 12 6 7.2743 6.5924 -1.2517 13 6 7.5921 8.0866 -1.1588 14 6 9.0912 8.2699 -0.9071 15 6 9.4069 9.7590 -0.7534 16 6 9.1394 10.4665 -2.0568 17 1 8.7805 9.9096 -2.9097 18 6 9.3528 11.8247 -2.1604 19 7 9.7893 12.5029 -1.1217 20 14 9.0218 12.7015 -3.7763 21 1 7.5937 12.5334 -4.1473 22 1 9.3270 14.1471 -3.6266 23 1 9.8810 12.1212 -4.8394 24 6 9.4798 7.5293 0.3754 25 6 9.1073 6.0513 0.2381 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3635 0.5138 0.8899 29 1 3.9563 0.7807 -0.8891 30 1 3.9557 0.7811 0.8908 31 1 3.3135 3.3831 -0.0005 32 1 5.3287 4.9356 0.8883 33 1 5.3302 4.9334 -0.8916 34 1 7.6364 4.0273 0.8908 35 1 7.6373 4.0254 -0.8892 36 1 7.8275 6.1544 -2.0824 37 1 6.2052 6.4581 -1.4165 38 1 7.0284 8.5281 -0.3368 39 1 7.3173 8.5758 -2.0933 40 1 9.6540 7.8631 -1.7474 41 1 8.7768 10.1852 0.0273 42 1 10.4553 9.8820 -0.4817 43 1 9.9391 13.4585 -1.1945 44 1 8.9459 7.9621 1.2214 45 1 10.5539 7.6204 0.5370 46 1 9.3696 5.5239 1.1552 47 1 9.6521 5.6159 -0.5997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565654789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:21 Heat of formation + Delta-G solvation = -159.250131 kcal Electronic energy + Delta-G solvation = -25368.502970 eV Core-core repulsion = 21549.710346 eV Total energy + Delta-G solvation = -3818.792625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.79755 -40.79262 -39.88607 -37.80769 -36.41210 -35.64346 -34.48362 -32.35690 -31.58541 -30.33905 -29.14706 -27.69988 -25.92878 -24.24104 -23.62391 -22.33216 -21.97351 -21.33467 -20.41920 -19.03999 -18.42594 -18.34143 -17.84856 -17.54197 -16.80732 -16.70505 -16.53215 -16.15383 -15.79874 -15.33810 -15.07973 -14.88923 -14.73878 -14.62149 -14.23890 -14.12456 -13.96285 -13.66303 -13.43645 -13.21856 -13.00009 -12.92055 -12.75320 -12.55134 -12.46168 -12.13479 -11.99637 -11.90637 -11.89412 -11.81086 -11.62318 -11.21073 -11.06780 -10.82511 -10.67241 -10.48969 -10.32905 -9.22995 -8.14959 -6.24516 0.94556 1.30820 1.40823 1.43537 1.51158 1.54837 2.22172 2.43436 3.01482 3.18012 3.55534 3.81154 3.93689 4.06896 4.09528 4.18052 4.19069 4.25562 4.27099 4.33007 4.35075 4.44265 4.59885 4.61465 4.70928 4.72562 4.78446 4.87036 4.92474 5.01448 5.02840 5.11959 5.16167 5.20844 5.26056 5.41301 5.44410 5.50179 5.61007 5.84121 5.92192 6.17650 6.21264 6.33190 6.34996 6.49276 6.91518 7.09728 7.43599 8.96614 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.001998 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.194459 B =14010.114637 C =14933.083580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.465 3.535 4 O -0.529 6.529 5 C 0.126 3.874 6 N -0.721 5.721 7 C 0.528 3.472 8 O -0.572 6.572 9 C -0.131 4.131 10 C 0.076 3.924 11 N -0.542 5.542 12 C 0.060 3.940 13 C -0.094 4.094 14 C -0.077 4.077 15 C 0.034 3.966 16 C -0.530 4.530 17 H 0.060 0.940 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.960 3.040 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.269 1.269 24 C -0.106 4.106 25 C 0.066 3.934 26 H 0.064 0.936 27 H 0.133 0.867 28 H 0.065 0.935 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.419 0.581 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.028 0.972 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.045 0.955 41 H -0.011 1.011 42 H -0.016 1.016 43 H 0.261 0.739 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.508 -26.889 2.913 32.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.309 3.691 4 O -0.418 6.418 5 C 0.002 3.998 6 N -0.378 5.378 7 C 0.316 3.684 8 O -0.451 6.451 9 C -0.171 4.171 10 C -0.052 4.052 11 N -0.267 5.267 12 C -0.068 4.068 13 C -0.132 4.132 14 C -0.095 4.095 15 C -0.003 4.003 16 C -0.568 4.568 17 H 0.079 0.921 18 C -0.200 4.200 19 N -0.576 5.576 20 Si 0.785 3.215 21 H -0.191 1.191 22 H -0.211 1.211 23 H -0.194 1.194 24 C -0.144 4.144 25 C -0.061 4.061 26 H 0.083 0.917 27 H 0.151 0.849 28 H 0.084 0.916 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.257 0.743 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.008 0.992 42 H 0.002 0.998 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.105 0.895 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -17.366 -26.850 3.350 32.152 hybrid contribution 0.021 1.007 -1.265 1.617 sum -17.346 -25.844 2.085 31.195 Atomic orbital electron populations 1.23620 0.74023 1.05994 1.02811 1.86479 1.25455 1.31929 1.83399 1.23669 0.92084 0.81724 0.71610 1.90693 1.67432 1.37097 1.46609 1.20722 0.86376 0.85212 1.07504 1.45770 1.08054 1.07889 1.76044 1.20833 0.81285 0.91960 0.74294 1.90721 1.52219 1.51330 1.50850 1.21613 0.96888 0.91659 1.06908 1.21716 0.94276 0.87642 1.01599 1.61911 1.15588 1.13941 1.35245 1.22170 1.01199 0.93775 0.89635 1.21421 0.95493 0.95060 1.01233 1.21104 0.96371 0.95545 0.96528 1.19007 0.94118 0.91867 0.95356 1.21628 1.43437 0.93426 0.98284 0.92145 1.25957 0.95219 0.98773 1.00042 1.70098 1.47393 1.08162 1.31908 0.85572 0.79104 0.77131 0.79664 1.19074 1.21120 1.19412 1.21594 1.00217 0.94789 0.97803 1.22010 0.87175 0.96130 1.00819 0.91712 0.84923 0.91646 0.85955 0.85816 0.74281 0.86247 0.87078 0.90281 0.95065 0.95378 0.88808 0.92862 0.92455 0.93683 0.99231 0.99754 0.93004 0.92359 0.92171 0.89477 0.95167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 113.37 1.20 1.39 16 2 O -0.36 -4.02 10.57 -51.41 -0.54 -4.56 16 3 C 0.47 6.14 8.03 71.23 0.57 6.71 16 4 O -0.53 -9.63 15.42 21.95 0.34 -9.29 16 5 C 0.13 1.44 6.27 85.63 0.54 1.97 16 6 N -0.72 -9.93 5.53 -466.79 -2.58 -12.51 16 7 C 0.53 9.59 7.83 87.66 0.69 10.27 16 8 O -0.57 -14.31 15.98 -3.04 -0.05 -14.36 16 9 C -0.13 -2.18 5.63 29.85 0.17 -2.01 16 10 C 0.08 1.67 4.25 86.31 0.37 2.04 16 11 N -0.54 -14.33 4.66 -896.33 -4.17 -18.50 16 12 C 0.06 1.67 5.29 86.33 0.46 2.13 16 13 C -0.09 -3.45 5.15 30.64 0.16 -3.29 16 14 C -0.08 -3.18 2.20 -10.72 -0.02 -3.21 16 15 C 0.03 1.79 4.45 29.85 0.13 1.93 16 16 C -0.53 -30.13 8.45 25.60 0.22 -29.91 16 17 H 0.06 3.28 7.08 -2.91 -0.02 3.26 16 18 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 19 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 20 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 C -0.11 -3.70 5.38 30.65 0.16 -3.53 16 25 C 0.07 1.87 5.46 86.33 0.47 2.34 16 26 H 0.06 0.46 8.13 -2.38 -0.02 0.44 16 27 H 0.13 0.12 8.14 -2.38 -0.02 0.10 16 28 H 0.06 0.46 8.13 -2.39 -0.02 0.44 16 29 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.42 5.15 7.44 -92.71 -0.69 4.46 16 32 H 0.12 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.11 1.59 6.43 -2.39 -0.02 1.58 16 34 H 0.08 1.77 7.94 -2.39 -0.02 1.76 16 35 H 0.03 0.75 8.08 -2.39 -0.02 0.73 16 36 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.09 2.13 6.21 -2.39 -0.01 2.11 16 38 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.06 2.24 7.06 -2.39 -0.02 2.23 16 40 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 41 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 42 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 43 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.09 2.13 8.01 -2.39 -0.02 2.11 16 47 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -72.94 381.23 1.13 -71.81 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.26 Total: 11.02 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 5.56 Total: -12.88 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -6.47 Total: -88.42 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.25 Total: -28.21 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -72.94 1.13 -71.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565654789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.440 kcal (2) G-P(sol) polarization free energy of solvation -72.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds