Wall clock time and date at job start Fri Apr 10 2020 18:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46902 * 109.47466 * 2 1 4 4 C 1.46846 * 110.99617 * 294.20987 * 3 2 1 5 5 C 1.53040 * 109.51964 * 174.15808 * 4 3 2 6 6 C 1.53119 * 109.28089 * 59.17912 * 5 4 3 7 7 C 1.52995 * 109.57448 * 182.40979 * 6 5 4 8 8 N 1.46500 * 109.47071 * 294.71033 * 7 6 5 9 9 C 1.34778 * 120.00233 * 180.02562 * 8 7 6 10 10 O 1.21585 * 119.99754 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00145 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99930 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47030 * 179.97438 * 12 11 9 14 14 O 1.21289 * 120.00354 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99783 * 180.02562 * 13 12 11 16 16 C 1.37103 * 119.99981 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99359 * 359.97438 * 16 15 13 18 18 C 1.38942 * 120.00074 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00276 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99929 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47349 * 59.99644 * 20 18 16 22 22 H 1.48502 * 109.47152 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47123 * 299.98930 * 20 18 16 24 24 C 1.53124 * 109.15841 * 302.34776 * 6 5 4 25 25 C 1.46846 * 111.00204 * 169.99882 * 3 2 1 26 26 H 1.09004 * 109.47372 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47207 * 299.99940 * 1 2 3 28 28 H 1.09002 * 109.46874 * 60.00238 * 1 2 3 29 29 H 1.08997 * 109.47222 * 239.99574 * 2 1 3 30 30 H 1.09007 * 109.47397 * 120.00253 * 2 1 3 31 31 H 1.08996 * 109.46231 * 294.17554 * 4 3 2 32 32 H 1.09004 * 109.46418 * 54.14394 * 4 3 2 33 33 H 1.09004 * 109.50602 * 299.23671 * 5 4 3 34 34 H 1.08998 * 109.50366 * 179.12192 * 5 4 3 35 35 H 1.08999 * 109.51878 * 62.24548 * 6 5 4 36 36 H 1.08999 * 109.47534 * 54.71390 * 7 6 5 37 37 H 1.09002 * 109.47076 * 174.71469 * 7 6 5 38 38 H 0.97004 * 120.00143 * 0.02562 * 8 7 6 39 39 H 0.97004 * 120.00231 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.47405 * 299.99913 * 12 11 9 41 41 H 1.09005 * 109.47294 * 59.99541 * 12 11 9 42 42 H 0.96998 * 120.00236 * 359.97438 * 15 13 12 43 43 H 0.97003 * 120.00572 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.49853 * 297.70868 * 24 6 5 45 45 H 1.08994 * 109.53481 * 177.61659 * 24 6 5 46 46 H 1.09001 * 109.45990 * 305.85570 * 25 3 2 47 47 H 1.08999 * 109.46398 * 65.83493 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6651 2.0685 -1.2504 5 6 2.0608 3.5439 -1.1567 6 6 3.5676 3.6482 -0.9057 7 6 3.9609 5.1187 -0.7510 8 7 3.7367 5.8199 -2.0176 9 6 4.0154 7.1347 -2.1185 10 8 4.4533 7.7387 -1.1584 11 7 3.8086 7.7799 -3.2835 12 6 4.1111 9.2092 -3.3930 13 6 3.7944 9.6843 -4.7876 14 8 3.3593 8.9056 -5.6094 15 7 3.9955 10.9744 -5.1220 16 6 3.7079 11.4065 -6.3909 17 1 3.3205 10.7130 -7.1226 18 6 3.9158 12.7363 -6.7358 19 7 4.3876 13.5800 -5.8456 20 14 3.5232 13.3252 -8.4645 21 1 2.0828 13.1019 -8.7484 22 1 3.8303 14.7739 -8.5757 23 1 4.3440 12.5684 -9.4436 24 6 3.9175 2.8873 0.3762 25 6 3.4680 1.4311 0.2381 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.1942 1.6026 -2.0816 32 1 0.5903 1.9904 -1.4148 33 1 1.5214 4.0138 -0.3342 34 1 1.8117 4.0475 -2.0907 35 1 4.1079 3.2131 -1.7464 36 1 3.3544 5.5768 0.0303 37 1 5.0144 5.1864 -0.4798 38 1 3.3876 5.3380 -2.7837 39 1 3.4596 7.2980 -4.0496 40 1 3.5084 9.7643 -2.6740 41 1 5.1683 9.3739 -3.1846 42 1 4.3438 11.5971 -4.4649 43 1 4.5324 14.5085 -6.0862 44 1 3.4074 3.3469 1.2228 45 1 4.9948 2.9219 0.5381 46 1 3.7027 0.8900 1.1548 47 1 3.9888 0.9684 -0.6002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566873008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:29 Heat of formation + Delta-G solvation = -79.094477 kcal Electronic energy + Delta-G solvation = -25382.602289 eV Core-core repulsion = 21599.578225 eV Total energy + Delta-G solvation = -3783.024063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.08406 -39.36870 -38.17213 -36.07377 -34.38070 -33.65412 -33.48456 -31.37220 -31.25056 -30.49660 -27.90579 -26.28649 -24.40453 -23.83950 -22.77976 -21.47965 -20.68121 -20.03417 -19.55687 -18.35997 -17.93175 -16.48676 -16.19911 -15.78388 -15.55856 -15.45723 -14.91420 -14.72365 -14.66212 -14.43753 -14.22367 -13.96697 -13.81852 -13.62137 -13.35972 -13.26052 -12.71198 -12.45473 -12.15446 -12.12861 -12.00929 -11.83306 -11.61718 -11.53232 -11.42622 -11.09513 -10.97754 -10.76644 -10.55223 -10.49889 -10.30413 -9.99563 -9.61274 -9.11368 -8.70439 -8.60750 -8.55581 -8.08418 -6.49787 -3.91931 2.86737 3.14667 3.22328 3.26330 3.44764 3.48812 3.77197 4.10138 4.34902 4.36975 4.42921 4.52889 4.69215 4.80536 4.90731 4.92765 4.97229 5.06957 5.08719 5.18787 5.20579 5.24558 5.36759 5.39902 5.46314 5.54324 5.57935 5.65645 5.73537 5.79437 5.84840 5.87309 5.95645 6.03582 6.10409 6.10613 6.55153 6.71193 6.72546 6.78993 7.13304 7.47091 7.93826 8.27598 8.47000 8.84012 9.06054 9.41256 9.89280 10.67002 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.030973 B = 0.001904 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.789817 B =14700.920673 C =15367.475283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.053 3.947 5 C -0.113 4.113 6 C -0.101 4.101 7 C 0.147 3.853 8 N -0.749 5.749 9 C 0.704 3.296 10 O -0.599 6.599 11 N -0.725 5.725 12 C 0.129 3.871 13 C 0.429 3.571 14 O -0.599 6.599 15 N -0.549 5.549 16 C -0.306 4.306 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.895 5.895 20 Si 0.934 3.066 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 C -0.108 4.108 25 C 0.057 3.943 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.395 0.605 39 H 0.406 0.594 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.396 0.604 43 H 0.275 0.725 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.372 -24.342 12.245 27.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 N -0.265 5.265 4 C -0.075 4.075 5 C -0.150 4.150 6 C -0.120 4.120 7 C 0.022 3.978 8 N -0.405 5.405 9 C 0.403 3.597 10 O -0.478 6.478 11 N -0.383 5.383 12 C 0.000 4.000 13 C 0.214 3.786 14 O -0.485 6.485 15 N -0.184 5.184 16 C -0.435 4.435 17 H 0.122 0.878 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.147 4.147 25 C -0.071 4.071 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.229 0.771 39 H 0.243 0.757 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.230 0.770 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.432 -23.796 12.942 27.304 hybrid contribution 0.147 -0.105 -1.853 1.862 sum -3.285 -23.900 11.089 26.551 Atomic orbital electron populations 1.21814 0.94795 1.01528 1.02640 1.22056 0.96230 0.88828 1.00620 1.61969 1.13826 1.15392 1.35287 1.22152 1.01026 0.94533 0.89786 1.21667 0.95229 0.95483 1.02663 1.21462 0.96791 0.94753 0.98969 1.21163 1.01191 0.90003 0.85396 1.45062 1.71921 1.08473 1.15083 1.15860 0.78969 0.81429 0.83400 1.90903 1.52404 1.66706 1.37745 1.44774 1.70092 1.10424 1.12976 1.20774 1.01761 0.80656 0.96782 1.19776 0.85886 0.83859 0.89030 1.90484 1.51841 1.54490 1.51723 1.41784 1.55802 1.07560 1.13253 1.19676 1.41097 0.94255 0.88479 0.87760 1.25320 0.96732 0.95712 0.99953 1.69607 1.44068 1.05078 1.34714 0.85870 0.79132 0.77434 0.81497 1.19805 1.20863 1.19815 1.21548 1.01056 0.94397 0.97663 1.22064 0.87315 0.97112 1.00581 0.92365 0.91760 0.92579 0.95088 0.90862 0.94972 0.90351 0.90621 0.91245 0.90791 0.91536 0.91717 0.77104 0.75673 0.90037 0.90061 0.77002 0.91549 0.90524 0.91021 0.90654 0.94951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.84 37.15 0.37 -0.49 16 2 C 0.05 0.32 5.68 -3.83 -0.02 0.29 16 3 N -0.54 -3.98 4.66 -234.67 -1.09 -5.07 16 4 C 0.05 0.38 5.29 -3.83 -0.02 0.36 16 5 C -0.11 -0.86 5.23 -26.65 -0.14 -1.00 16 6 C -0.10 -0.77 2.29 -90.50 -0.21 -0.97 16 7 C 0.15 1.51 5.07 -4.04 -0.02 1.49 16 8 N -0.75 -8.97 5.32 -65.23 -0.35 -9.31 16 9 C 0.70 11.61 8.57 -86.92 -0.74 10.86 16 10 O -0.60 -11.96 16.34 5.29 0.09 -11.88 16 11 N -0.73 -12.37 5.53 -66.41 -0.37 -12.74 16 12 C 0.13 2.44 6.15 -5.19 -0.03 2.40 16 13 C 0.43 9.92 7.85 -10.98 -0.09 9.84 16 14 O -0.60 -15.37 15.24 5.55 0.08 -15.28 16 15 N -0.55 -13.71 5.29 -10.96 -0.06 -13.77 16 16 C -0.31 -8.34 9.68 -14.93 -0.14 -8.48 16 17 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.97 13.05 55.50 0.72 -23.24 16 20 Si 0.93 20.60 29.55 -169.99 -5.02 15.57 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 C -0.11 -0.74 5.38 -26.65 -0.14 -0.89 16 25 C 0.06 0.38 5.46 -3.84 -0.02 0.36 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 29 H 0.03 0.19 8.12 -51.93 -0.42 -0.23 16 30 H 0.07 0.41 7.99 -51.93 -0.41 0.00 16 31 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.55 6.21 -51.93 -0.32 0.23 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.52 7.27 -51.93 -0.38 0.14 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.40 3.84 7.70 -40.82 -0.31 3.53 16 39 H 0.41 6.69 7.45 -40.82 -0.30 6.39 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.40 9.53 7.90 -40.82 -0.32 9.20 16 43 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.45 8.02 -51.93 -0.42 0.03 16 47 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 378.55 15.07 5.70 5.70 Total: -1.00 -31.87 378.55 -9.41 -41.28 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -7.81 Total: 14.38 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: -1.31 Total: 14.36 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -1.14 Total: -64.14 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: 0.17 Total: -27.16 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.87 -9.41 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566873008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.817 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds