Wall clock time and date at job start Fri Apr 10 2020 18:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46902 * 109.47466 * 2 1 4 4 C 1.46846 * 110.99617 * 294.20987 * 3 2 1 5 5 C 1.53040 * 109.51964 * 174.15808 * 4 3 2 6 6 C 1.53119 * 109.28089 * 59.17912 * 5 4 3 7 7 C 1.52995 * 109.57448 * 182.40979 * 6 5 4 8 8 N 1.46500 * 109.47071 * 294.71033 * 7 6 5 9 9 C 1.34778 * 120.00233 * 180.02562 * 8 7 6 10 10 O 1.21585 * 119.99754 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00145 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99930 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47030 * 179.97438 * 12 11 9 14 14 O 1.21289 * 120.00354 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99783 * 180.02562 * 13 12 11 16 16 C 1.37103 * 119.99981 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99359 * 359.97438 * 16 15 13 18 18 C 1.38942 * 120.00074 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00276 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99929 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47349 * 59.99644 * 20 18 16 22 22 H 1.48502 * 109.47152 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47123 * 299.98930 * 20 18 16 24 24 C 1.53124 * 109.15841 * 302.34776 * 6 5 4 25 25 C 1.46846 * 111.00204 * 169.99882 * 3 2 1 26 26 H 1.09004 * 109.47372 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47207 * 299.99940 * 1 2 3 28 28 H 1.09002 * 109.46874 * 60.00238 * 1 2 3 29 29 H 1.08997 * 109.47222 * 239.99574 * 2 1 3 30 30 H 1.09007 * 109.47397 * 120.00253 * 2 1 3 31 31 H 1.08996 * 109.46231 * 294.17554 * 4 3 2 32 32 H 1.09004 * 109.46418 * 54.14394 * 4 3 2 33 33 H 1.09004 * 109.50602 * 299.23671 * 5 4 3 34 34 H 1.08998 * 109.50366 * 179.12192 * 5 4 3 35 35 H 1.08999 * 109.51878 * 62.24548 * 6 5 4 36 36 H 1.08999 * 109.47534 * 54.71390 * 7 6 5 37 37 H 1.09002 * 109.47076 * 174.71469 * 7 6 5 38 38 H 0.97004 * 120.00143 * 0.02562 * 8 7 6 39 39 H 0.97004 * 120.00231 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.47405 * 299.99913 * 12 11 9 41 41 H 1.09005 * 109.47294 * 59.99541 * 12 11 9 42 42 H 0.96998 * 120.00236 * 359.97438 * 15 13 12 43 43 H 0.97003 * 120.00572 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.49853 * 297.70868 * 24 6 5 45 45 H 1.08994 * 109.53481 * 177.61659 * 24 6 5 46 46 H 1.09001 * 109.45990 * 305.85570 * 25 3 2 47 47 H 1.08999 * 109.46398 * 65.83493 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6651 2.0685 -1.2504 5 6 2.0608 3.5439 -1.1567 6 6 3.5676 3.6482 -0.9057 7 6 3.9609 5.1187 -0.7510 8 7 3.7367 5.8199 -2.0176 9 6 4.0154 7.1347 -2.1185 10 8 4.4533 7.7387 -1.1584 11 7 3.8086 7.7799 -3.2835 12 6 4.1111 9.2092 -3.3930 13 6 3.7944 9.6843 -4.7876 14 8 3.3593 8.9056 -5.6094 15 7 3.9955 10.9744 -5.1220 16 6 3.7079 11.4065 -6.3909 17 1 3.3205 10.7130 -7.1226 18 6 3.9158 12.7363 -6.7358 19 7 4.3876 13.5800 -5.8456 20 14 3.5232 13.3252 -8.4645 21 1 2.0828 13.1019 -8.7484 22 1 3.8303 14.7739 -8.5757 23 1 4.3440 12.5684 -9.4436 24 6 3.9175 2.8873 0.3762 25 6 3.4680 1.4311 0.2381 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.1942 1.6026 -2.0816 32 1 0.5903 1.9904 -1.4148 33 1 1.5214 4.0138 -0.3342 34 1 1.8117 4.0475 -2.0907 35 1 4.1079 3.2131 -1.7464 36 1 3.3544 5.5768 0.0303 37 1 5.0144 5.1864 -0.4798 38 1 3.3876 5.3380 -2.7837 39 1 3.4596 7.2980 -4.0496 40 1 3.5084 9.7643 -2.6740 41 1 5.1683 9.3739 -3.1846 42 1 4.3438 11.5971 -4.4649 43 1 4.5324 14.5085 -6.0862 44 1 3.4074 3.3469 1.2228 45 1 4.9948 2.9219 0.5381 46 1 3.7027 0.8900 1.1548 47 1 3.9888 0.9684 -0.6002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566873008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:29 Heat of formation + Delta-G solvation = -103.340127 kcal Electronic energy + Delta-G solvation = -25383.653659 eV Core-core repulsion = 21599.578225 eV Total energy + Delta-G solvation = -3784.075434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26868 -40.30035 -39.84389 -36.92298 -36.20433 -35.24889 -34.40697 -33.35519 -31.84704 -31.15791 -29.30941 -27.36250 -26.14134 -24.44336 -23.48426 -22.06230 -21.92025 -21.34952 -20.71114 -20.09366 -19.48812 -17.50490 -17.41596 -17.03779 -16.88385 -16.46012 -16.21691 -15.96929 -15.86435 -15.49734 -15.31853 -15.15005 -15.10890 -14.62520 -14.18183 -13.97414 -13.87602 -13.77595 -13.52808 -13.29097 -13.05063 -12.88629 -12.61208 -12.51647 -12.46049 -12.13105 -12.10756 -11.95453 -11.62033 -11.55306 -11.52382 -11.26186 -11.15004 -10.54646 -10.41232 -10.09306 -9.78738 -9.23735 -8.49765 -6.00185 1.38941 1.43088 1.53493 1.64397 1.90992 2.13802 2.29621 2.97252 3.06374 3.17329 3.35190 3.68693 3.78255 3.87977 4.14524 4.22230 4.29453 4.33057 4.38348 4.44764 4.47254 4.50317 4.60449 4.60737 4.64864 4.75134 4.84882 4.89151 4.92271 4.99019 5.04870 5.14242 5.20672 5.25737 5.32331 5.37179 5.39450 5.44340 5.55000 5.92285 5.97458 6.18826 6.20450 6.49149 7.04271 7.04646 7.43899 7.55260 7.95473 8.66813 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.030973 B = 0.001904 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.789817 B =14700.920673 C =15367.475283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 N -0.551 5.551 4 C 0.055 3.945 5 C -0.110 4.110 6 C -0.089 4.089 7 C 0.148 3.852 8 N -0.730 5.730 9 C 0.703 3.297 10 O -0.634 6.634 11 N -0.725 5.725 12 C 0.142 3.858 13 C 0.434 3.566 14 O -0.624 6.624 15 N -0.559 5.559 16 C -0.338 4.338 17 H 0.087 0.913 18 C -0.011 4.011 19 N -0.916 5.916 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.270 1.270 24 C -0.106 4.106 25 C 0.058 3.942 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.409 0.591 39 H 0.410 0.590 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.399 0.601 43 H 0.280 0.720 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 -25.403 12.088 28.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 N -0.277 5.277 4 C -0.073 4.073 5 C -0.148 4.148 6 C -0.108 4.108 7 C 0.024 3.976 8 N -0.387 5.387 9 C 0.403 3.597 10 O -0.516 6.516 11 N -0.382 5.382 12 C 0.013 3.987 13 C 0.221 3.779 14 O -0.512 6.512 15 N -0.195 5.195 16 C -0.468 4.468 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.195 1.195 24 C -0.144 4.144 25 C -0.070 4.070 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.245 0.755 39 H 0.248 0.752 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.233 0.767 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.494 -24.904 12.796 28.216 hybrid contribution 0.153 0.148 -1.741 1.754 sum -3.341 -24.756 11.055 27.317 Atomic orbital electron populations 1.21790 0.94538 1.02105 1.02054 1.22097 0.96445 0.88282 1.00971 1.61990 1.14301 1.16114 1.35289 1.22111 1.01148 0.94076 0.89921 1.21634 0.95014 0.95892 1.02274 1.21374 0.96821 0.92799 0.99787 1.21266 1.00769 0.91342 0.84213 1.44979 1.70509 1.06959 1.16240 1.15974 0.78729 0.82493 0.82533 1.90881 1.54092 1.67834 1.38757 1.44686 1.70384 1.09700 1.13458 1.20574 1.02435 0.81862 0.93821 1.20411 0.84193 0.83031 0.90279 1.90462 1.52595 1.55028 1.53127 1.41833 1.56462 1.08310 1.12853 1.19708 1.42906 0.94807 0.89329 0.89525 1.26134 0.96012 0.95311 1.03709 1.69677 1.44157 1.05442 1.36283 0.84918 0.78890 0.77303 0.76805 1.19498 1.19664 1.19498 1.21532 1.01610 0.94459 0.96794 1.22074 0.86973 0.96817 1.01087 0.91247 0.92531 0.92912 0.94965 0.90233 0.94811 0.90248 0.91770 0.91050 0.89986 0.92565 0.92175 0.75521 0.75234 0.89134 0.89122 0.76699 0.91079 0.91249 0.90081 0.89817 0.94745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.84 71.98 0.71 -0.80 16 2 C 0.05 0.55 5.68 86.30 0.49 1.04 16 3 N -0.55 -7.35 4.66 -896.37 -4.17 -11.53 16 4 C 0.06 0.73 5.29 86.33 0.46 1.18 16 5 C -0.11 -1.55 5.23 30.65 0.16 -1.39 16 6 C -0.09 -1.22 2.29 -10.71 -0.02 -1.24 16 7 C 0.15 2.90 5.07 86.38 0.44 3.34 16 8 N -0.73 -16.59 5.32 -478.55 -2.54 -19.13 16 9 C 0.70 22.55 8.57 179.06 1.53 24.08 16 10 O -0.63 -24.96 16.34 -3.99 -0.07 -25.03 16 11 N -0.72 -24.09 5.53 -482.30 -2.67 -26.76 16 12 C 0.14 5.28 6.15 85.63 0.53 5.81 16 13 C 0.43 20.10 7.85 87.66 0.69 20.78 16 14 O -0.62 -32.13 15.24 -3.06 -0.05 -32.18 16 15 N -0.56 -28.18 5.29 -306.98 -1.62 -29.81 16 16 C -0.34 -18.64 9.68 84.04 0.81 -17.83 16 17 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 18 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 19 N -0.92 -48.74 13.05 21.66 0.28 -48.46 16 20 Si 1.00 41.72 29.55 68.60 2.03 43.75 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 C -0.11 -1.29 5.38 30.65 0.16 -1.13 16 25 C 0.06 0.68 5.46 86.32 0.47 1.15 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.57 6.43 -2.39 -0.02 0.55 16 29 H 0.03 0.35 8.12 -2.39 -0.02 0.33 16 30 H 0.08 0.77 7.99 -2.38 -0.02 0.75 16 31 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 1.03 6.21 -2.38 -0.01 1.01 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 0.97 7.27 -2.39 -0.02 0.95 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.41 7.25 7.70 -92.71 -0.71 6.54 16 39 H 0.41 13.13 7.45 -92.71 -0.69 12.44 16 40 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 42 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 43 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.08 0.84 8.02 -2.39 -0.02 0.82 16 47 H 0.03 0.39 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -67.12 378.55 -3.06 -70.19 By element: Atomic # 1 Polarization: 45.23 SS G_CDS: -1.15 Total: 44.08 kcal Atomic # 6 Polarization: 27.98 SS G_CDS: 6.89 Total: 34.87 kcal Atomic # 7 Polarization: -124.95 SS G_CDS: -10.73 Total: -135.68 kcal Atomic # 8 Polarization: -57.10 SS G_CDS: -0.11 Total: -57.21 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -67.12 -3.06 -70.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566873008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.155 kcal (2) G-P(sol) polarization free energy of solvation -67.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds