Wall clock time and date at job start Fri Apr 10 2020 18:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.50550 * 2 1 4 4 C 1.53096 * 109.50516 * 239.90870 * 2 1 3 5 5 N 1.47009 * 109.25690 * 183.21473 * 4 2 1 6 6 C 1.46899 * 111.00144 * 182.39387 * 5 4 2 7 7 C 1.52998 * 109.47376 * 170.00151 * 6 5 4 8 8 H 1.09005 * 109.47103 * 60.00093 * 7 6 5 9 9 O 1.42899 * 109.47158 * 300.00280 * 7 6 5 10 10 C 1.52998 * 109.47540 * 179.97438 * 7 6 5 11 11 N 1.46901 * 109.47548 * 185.80318 * 10 7 6 12 12 C 1.46894 * 111.00176 * 183.61454 * 11 10 7 13 13 C 1.52997 * 109.47181 * 184.69049 * 12 11 10 14 14 C 1.50701 * 115.54994 * 297.69261 * 13 12 11 15 15 H 1.08004 * 119.99249 * 91.68193 * 14 13 12 16 16 C 1.37876 * 120.00443 * 271.68464 * 14 13 12 17 17 N 1.31508 * 119.99954 * 182.77661 * 16 14 13 18 18 Si 1.86801 * 119.99728 * 2.78310 * 16 14 13 19 19 H 1.48500 * 109.46816 * 265.71060 * 18 16 14 20 20 H 1.48496 * 109.47097 * 145.71510 * 18 16 14 21 21 H 1.48494 * 109.47326 * 25.70771 * 18 16 14 22 22 C 1.52996 * 117.49815 * 83.36791 * 13 12 11 23 23 C 1.53003 * 117.49886 * 152.02964 * 13 12 11 24 24 C 1.47017 * 110.75366 * 58.62056 * 5 4 2 25 25 C 1.53100 * 109.25379 * 301.38150 * 24 5 4 26 26 H 1.09001 * 109.50885 * 176.78027 * 25 24 5 27 27 C 1.52997 * 109.50858 * 296.91342 * 25 24 5 28 28 O 1.43016 * 109.26095 * 56.84952 * 25 24 5 29 29 H 1.08998 * 109.47107 * 180.08747 * 1 2 3 30 30 H 1.09004 * 109.47306 * 300.08739 * 1 2 3 31 31 H 1.09002 * 109.47044 * 60.08852 * 1 2 3 32 32 H 1.09003 * 109.50828 * 63.28648 * 4 2 1 33 33 H 1.09002 * 109.50861 * 303.15427 * 4 2 1 34 34 H 1.08997 * 109.47185 * 50.00258 * 6 5 4 35 35 H 1.09004 * 109.46959 * 290.00249 * 6 5 4 36 36 H 0.96702 * 113.99729 * 299.99532 * 9 7 6 37 37 H 1.09009 * 109.47024 * 65.80283 * 10 7 6 38 38 H 1.09003 * 109.46922 * 305.80720 * 10 7 6 39 39 H 1.00899 * 111.00244 * 307.57276 * 11 10 7 40 40 H 1.08997 * 109.47021 * 64.68965 * 12 11 10 41 41 H 1.09006 * 109.47480 * 304.69211 * 12 11 10 42 42 H 0.97003 * 119.99911 * 180.02562 * 17 16 14 43 43 H 1.09008 * 117.49538 * 215.00215 * 22 13 12 44 44 H 1.08995 * 117.50322 * 0.02562 * 22 13 12 45 45 H 1.09003 * 117.50145 * 359.97150 * 23 13 12 46 46 H 1.08997 * 117.50240 * 144.97211 * 23 13 12 47 47 H 1.08996 * 109.50955 * 61.31243 * 24 5 4 48 48 H 1.08997 * 109.50865 * 181.45311 * 24 5 4 49 49 H 1.09004 * 109.46947 * 179.78352 * 27 25 24 50 50 H 1.09000 * 109.46818 * 299.78169 * 27 25 24 51 51 H 1.09004 * 109.47289 * 59.78290 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2486 5 7 3.5092 -0.7881 -1.2047 6 6 4.0446 -1.4261 -2.4148 7 6 5.5644 -1.2539 -2.4523 8 1 6.0047 -1.7199 -1.5707 9 8 5.8859 0.1384 -2.4659 10 6 6.1221 -1.9190 -3.7123 11 7 7.5901 -1.8758 -3.6800 12 6 8.1604 -2.4294 -4.9154 13 6 9.6851 -2.4756 -4.7973 14 6 10.3649 -1.1410 -4.6308 15 1 10.5585 -0.7534 -3.6415 16 6 10.7395 -0.4148 -5.7413 17 7 11.3814 0.7238 -5.5965 18 14 10.3352 -1.0483 -7.4515 19 1 11.4917 -1.8140 -7.9819 20 1 10.0477 0.0992 -8.3492 21 1 9.1450 -1.9335 -7.3829 22 6 10.3018 -3.6772 -4.0784 23 6 10.4235 -3.5494 -5.5990 24 6 3.9640 -1.4885 0.0053 25 6 3.4335 -0.7572 1.2413 26 1 3.7200 -1.3049 2.1392 27 6 4.0229 0.6537 1.2925 28 8 2.0076 -0.6766 1.1660 29 1 -0.3633 -1.0276 0.0016 30 1 -0.3634 0.5152 0.8892 31 1 -0.3633 0.5125 -0.8908 32 1 1.7274 -0.1788 -2.1391 33 1 1.6331 -1.7339 -1.2765 34 1 3.6043 -0.9602 -3.2963 35 1 3.7994 -2.4881 -2.4043 36 1 5.5256 0.6178 -3.2245 37 1 5.7623 -1.3874 -4.5933 38 1 5.7899 -2.9564 -3.7530 39 1 7.9208 -0.9364 -3.5183 40 1 7.8803 -1.7989 -5.7592 41 1 7.7774 -3.4378 -5.0724 42 1 11.6447 1.2349 -6.3778 43 1 11.1993 -3.5023 -3.4850 44 1 9.6215 -4.4350 -3.6900 45 1 9.8231 -4.2232 -6.2103 46 1 11.4008 -3.2904 -6.0063 47 1 3.5866 -2.5110 -0.0025 48 1 5.0536 -1.5020 0.0302 49 1 3.6418 1.1751 2.1706 50 1 5.1096 0.5916 1.3499 51 1 3.7372 1.1997 0.3933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568619849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:41 Heat of formation + Delta-G solvation = -65.351954 kcal Electronic energy + Delta-G solvation = -27155.133972 eV Core-core repulsion = 23476.246172 eV Total energy + Delta-G solvation = -3678.887800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28299 -38.15041 -37.06366 -35.40742 -33.85729 -33.61831 -32.04375 -30.86134 -29.52714 -27.12472 -26.78231 -25.49375 -24.00186 -23.11973 -22.20579 -21.46218 -21.12311 -19.66239 -18.90902 -16.88419 -16.73983 -16.22643 -16.04072 -15.97975 -15.49539 -15.29285 -14.88743 -14.67766 -14.36602 -14.13664 -13.76109 -13.64846 -13.18221 -13.06503 -12.77599 -12.69743 -12.42202 -12.38201 -12.10594 -12.04719 -11.89706 -11.77222 -11.55972 -11.47567 -11.23900 -11.06690 -10.73807 -10.62506 -10.49690 -10.41288 -10.09735 -9.91421 -9.65775 -9.43592 -8.93675 -8.57963 -8.51715 -8.41436 -7.66984 -6.07988 -4.10035 3.28717 3.38037 3.41740 3.43180 3.54971 4.39978 4.43794 4.50826 4.62164 4.64734 4.77398 4.84410 4.92271 4.99977 5.09719 5.15908 5.18126 5.21152 5.23323 5.29670 5.33846 5.35186 5.39754 5.52069 5.57843 5.59358 5.69665 5.76863 5.79328 5.81954 5.90721 5.92121 6.15340 6.17786 6.23323 6.24902 6.40664 6.51663 6.57126 6.72920 6.75670 6.83389 7.02199 7.12422 7.22986 7.76126 7.80790 7.87504 8.18895 8.57054 8.98300 9.55971 11.03828 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.023580 B = 0.002649 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.173247 B =10568.257363 C =10635.669913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.071 0.929 4 C 0.024 3.976 5 N -0.521 5.521 6 C 0.024 3.976 7 C 0.115 3.885 8 H 0.104 0.896 9 O -0.542 6.542 10 C 0.028 3.972 11 N -0.673 5.673 12 C 0.099 3.901 13 C 0.008 3.992 14 C -0.483 4.483 15 H 0.079 0.921 16 C 0.075 3.925 17 N -0.898 5.898 18 Si 0.879 3.121 19 H -0.280 1.280 20 H -0.296 1.296 21 H -0.259 1.259 22 C -0.169 4.169 23 C -0.207 4.207 24 C 0.021 3.979 25 C 0.091 3.909 26 H 0.103 0.897 27 C -0.174 4.174 28 O -0.381 6.381 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.368 0.632 37 H 0.024 0.976 38 H 0.068 0.932 39 H 0.361 0.639 40 H 0.024 0.976 41 H 0.042 0.958 42 H 0.263 0.737 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.039 0.961 48 H 0.093 0.907 49 H 0.054 0.946 50 H 0.068 0.932 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.200 -3.267 8.821 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.089 0.911 4 C -0.105 4.105 5 N -0.245 5.245 6 C -0.105 4.105 7 C 0.055 3.945 8 H 0.122 0.878 9 O -0.345 6.345 10 C -0.103 4.103 11 N -0.307 5.307 12 C -0.030 4.030 13 C 0.007 3.993 14 C -0.521 4.521 15 H 0.097 0.903 16 C -0.127 4.127 17 N -0.536 5.536 18 Si 0.707 3.293 19 H -0.207 1.207 20 H -0.223 1.223 21 H -0.183 1.183 22 C -0.207 4.207 23 C -0.245 4.245 24 C -0.107 4.107 25 C 0.034 3.966 26 H 0.121 0.879 27 C -0.231 4.231 28 O -0.300 6.300 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.215 0.785 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.183 0.817 40 H 0.042 0.958 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.057 0.943 48 H 0.111 0.889 49 H 0.073 0.927 50 H 0.087 0.913 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.689 -3.438 9.784 23.143 hybrid contribution -0.701 -0.350 -2.593 2.709 sum -21.390 -3.788 7.192 22.882 Atomic orbital electron populations 1.21751 0.93059 1.02797 1.02597 1.22128 0.94439 0.96197 0.84379 0.91138 1.22829 0.88252 0.99983 0.99403 1.62097 1.07901 1.52721 1.01791 1.22868 0.97178 0.97536 0.92886 1.21935 0.91022 0.82759 0.98829 0.87785 1.86657 1.78073 1.19662 1.50133 1.22590 0.91433 1.00264 0.96056 1.60335 1.03410 1.29971 1.36977 1.21626 0.95280 0.96670 0.89447 1.19313 0.89958 0.90909 0.99094 1.20321 1.37213 0.99795 0.94768 0.90267 1.24997 0.94136 0.94573 0.98949 1.69907 1.39064 1.14402 1.30227 0.86864 0.79772 0.78135 0.84544 1.20651 1.22320 1.18322 1.22701 1.02644 1.02069 0.93246 1.22980 1.02393 1.04862 0.94237 1.22862 1.01962 0.95471 0.90431 1.22254 0.80372 0.96795 0.97214 0.87875 1.22259 1.01738 0.96592 1.02520 1.88018 1.21118 1.78104 1.42757 0.92032 0.91592 0.91026 0.89914 0.94291 0.90461 0.93953 0.78545 0.95827 0.91371 0.81748 0.95808 0.93922 0.92702 0.89897 0.91070 0.91351 0.89666 0.94287 0.88852 0.92727 0.91290 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.57 37.16 0.36 -0.66 16 2 C 0.09 0.79 3.02 -26.68 -0.08 0.71 16 3 H 0.07 0.67 6.50 -51.93 -0.34 0.33 16 4 C 0.02 0.22 4.93 -3.71 -0.02 0.20 16 5 N -0.52 -5.40 3.96 -234.31 -0.93 -6.32 16 6 C 0.02 0.25 4.62 -3.83 -0.02 0.23 16 7 C 0.11 1.44 3.07 -26.73 -0.08 1.36 16 8 H 0.10 1.43 6.52 -51.93 -0.34 1.09 16 9 O -0.54 -7.61 12.70 -35.23 -0.45 -8.06 16 10 C 0.03 0.39 5.36 -3.82 -0.02 0.37 16 11 N -0.67 -12.54 6.49 -113.78 -0.74 -13.28 16 12 C 0.10 2.03 5.20 -3.83 -0.02 2.01 16 13 C 0.01 0.19 1.02 -155.66 -0.16 0.04 16 14 C -0.48 -13.25 8.80 -34.44 -0.30 -13.55 16 15 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 16 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 18 Si 0.88 21.54 24.91 -169.99 -4.23 17.31 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.26 -6.00 5.64 56.52 0.32 -5.68 16 22 C -0.17 -3.56 9.96 -26.69 -0.27 -3.82 16 23 C -0.21 -4.47 7.54 -26.69 -0.20 -4.67 16 24 C 0.02 0.22 4.85 -3.71 -0.02 0.20 16 25 C 0.09 0.91 3.92 -26.68 -0.10 0.81 16 26 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 27 C -0.17 -1.74 8.88 37.16 0.33 -1.41 16 28 O -0.38 -4.16 10.28 -35.23 -0.36 -4.52 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 35 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 36 H 0.37 4.20 9.05 45.56 0.41 4.61 16 37 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.36 7.50 7.69 -39.29 -0.30 7.20 16 40 H 0.02 0.52 6.68 -51.93 -0.35 0.17 16 41 H 0.04 0.81 8.10 -51.93 -0.42 0.39 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.08 1.78 8.14 -51.92 -0.42 1.35 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 46 H 0.08 1.94 7.21 -51.93 -0.37 1.56 16 47 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 1.02 6.38 -51.93 -0.33 0.69 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.07 0.81 6.13 -51.93 -0.32 0.50 16 LS Contribution 389.08 15.07 5.86 5.86 Total: -1.00 -30.40 389.08 -9.53 -39.93 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -8.75 Total: 11.57 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -0.70 Total: -16.17 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.89 Total: -45.92 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.81 Total: -12.58 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.23 Total: 17.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.40 -9.53 -39.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568619849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.424 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds