Wall clock time and date at job start Fri Apr 10 2020 18:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.50472 * 2 1 4 4 C 1.53103 * 109.50324 * 239.91439 * 2 1 3 5 5 N 1.47014 * 109.25484 * 183.21402 * 4 2 1 6 6 C 1.46903 * 110.99920 * 182.39211 * 5 4 2 7 7 C 1.53000 * 109.47134 * 75.16992 * 6 5 4 8 8 H 1.08999 * 109.46887 * 300.34987 * 7 6 5 9 9 O 1.42898 * 109.47192 * 60.35059 * 7 6 5 10 10 C 1.52998 * 109.46815 * 180.34974 * 7 6 5 11 11 N 1.46902 * 109.46666 * 179.97438 * 10 7 6 12 12 C 1.46907 * 110.99899 * 179.97438 * 11 10 7 13 13 C 1.53005 * 109.47015 * 174.48965 * 12 11 10 14 14 C 1.50701 * 115.54850 * 39.66235 * 13 12 11 15 15 H 1.08003 * 119.99581 * 265.12949 * 14 13 12 16 16 C 1.37871 * 120.00109 * 85.13240 * 14 13 12 17 17 N 1.31518 * 120.00234 * 0.71806 * 16 14 13 18 18 Si 1.86807 * 120.00026 * 180.71893 * 16 14 13 19 19 H 1.48501 * 109.46903 * 89.99730 * 18 16 14 20 20 H 1.48500 * 109.46999 * 210.00007 * 18 16 14 21 21 H 1.48495 * 109.46850 * 329.99928 * 18 16 14 22 22 C 1.52992 * 117.49505 * 253.95141 * 13 12 11 23 23 C 1.52993 * 117.49647 * 185.32936 * 13 12 11 24 24 C 1.47019 * 110.75277 * 58.61546 * 5 4 2 25 25 C 1.53093 * 109.25820 * 301.38192 * 24 5 4 26 26 H 1.09001 * 109.50946 * 296.91247 * 25 24 5 27 27 C 1.53001 * 109.50620 * 176.82712 * 25 24 5 28 28 O 1.43015 * 109.50733 * 120.13108 * 2 1 3 29 29 H 1.09003 * 109.47097 * 180.08777 * 1 2 3 30 30 H 1.08995 * 109.47634 * 60.08676 * 1 2 3 31 31 H 1.09003 * 109.47186 * 300.08538 * 1 2 3 32 32 H 1.08994 * 109.50511 * 303.14424 * 4 2 1 33 33 H 1.09001 * 109.50628 * 63.23972 * 4 2 1 34 34 H 1.09004 * 109.46684 * 195.17086 * 6 5 4 35 35 H 1.08994 * 109.46832 * 315.16805 * 6 5 4 36 36 H 0.96705 * 114.00196 * 59.99390 * 9 7 6 37 37 H 1.08999 * 109.47403 * 299.99697 * 10 7 6 38 38 H 1.08997 * 109.47049 * 60.00357 * 10 7 6 39 39 H 1.00905 * 111.00042 * 56.04923 * 11 10 7 40 40 H 1.09000 * 109.46840 * 294.48929 * 12 11 10 41 41 H 1.08998 * 109.46826 * 54.49453 * 12 11 10 42 42 H 0.97003 * 120.00151 * 185.03348 * 17 16 14 43 43 H 1.09000 * 117.50316 * 0.02562 * 22 13 12 44 44 H 1.09007 * 117.49640 * 145.02368 * 22 13 12 45 45 H 1.08997 * 117.49887 * 214.98097 * 23 13 12 46 46 H 1.09005 * 117.50360 * 359.97438 * 23 13 12 47 47 H 1.08998 * 109.50577 * 61.32179 * 24 5 4 48 48 H 1.09004 * 109.50461 * 181.44796 * 24 5 4 49 49 H 1.09000 * 109.46830 * 60.00270 * 27 25 24 50 50 H 1.09002 * 109.46908 * 180.02562 * 27 25 24 51 51 H 1.08996 * 109.47104 * 299.99781 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0411 -0.7235 -1.2488 5 7 3.5092 -0.7880 -1.2049 6 6 4.0445 -1.4259 -2.4150 7 6 3.9605 -0.4467 -3.5876 8 1 2.9207 -0.1627 -3.7499 9 8 4.7318 0.7191 -3.2909 10 6 4.5100 -1.1142 -4.8498 11 7 4.4287 -0.1741 -5.9757 12 6 4.9494 -0.7819 -7.2077 13 6 4.7230 0.1721 -8.3822 14 6 4.9522 1.6321 -8.0872 15 1 4.1212 2.2640 -7.8104 16 6 6.2226 2.1611 -8.1706 17 7 7.2323 1.3949 -8.5214 18 14 6.5099 3.9663 -7.7853 19 1 6.8084 4.1223 -6.3390 20 1 7.6573 4.4665 -8.5844 21 1 5.2923 4.7450 -8.1262 22 6 3.6165 -0.1828 -9.3774 23 6 5.0848 -0.3312 -9.7809 24 6 3.9639 -1.4884 0.0051 25 6 3.4335 -0.7573 1.2412 26 1 3.8534 0.2479 1.2777 27 6 3.8368 -1.5255 2.5014 28 8 2.0076 -0.6767 1.1659 29 1 -0.3633 -1.0277 0.0016 30 1 -0.3634 0.5124 -0.8907 31 1 -0.3634 0.5152 0.8892 32 1 1.6331 -1.7338 -1.2766 33 1 1.7266 -0.1791 -2.1392 34 1 5.0850 -1.7051 -2.2486 35 1 3.4612 -2.3178 -2.6439 36 1 5.6694 0.5410 -3.1344 37 1 5.5497 -1.3981 -4.6875 38 1 3.9215 -2.0033 -5.0761 39 1 4.9126 0.6857 -5.7646 40 1 6.0166 -0.9732 -7.0954 41 1 4.4297 -1.7211 -7.3971 42 1 8.1359 1.7476 -8.5095 43 1 3.0495 -1.0957 -9.1952 44 1 3.0538 0.6398 -9.8189 45 1 5.4882 0.3937 -10.4879 46 1 5.4845 -1.3419 -9.8645 47 1 3.5867 -2.5110 -0.0028 48 1 5.0536 -1.5020 0.0300 49 1 4.9236 -1.5891 2.5558 50 1 3.4585 -1.0047 3.3811 51 1 3.4153 -2.5300 2.4651 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568619854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:44 Heat of formation + Delta-G solvation = -93.451223 kcal Electronic energy + Delta-G solvation = -27002.822982 eV Core-core repulsion = 23322.716707 eV Total energy + Delta-G solvation = -3680.106275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.91231 -39.23164 -38.37360 -36.34630 -35.12574 -34.68600 -33.92822 -31.72586 -30.56707 -28.00054 -27.72734 -27.18419 -25.23712 -23.22070 -23.01359 -22.80916 -22.14490 -21.38579 -20.92201 -17.93197 -17.68941 -17.56864 -17.16313 -16.88450 -16.60749 -16.35635 -16.20216 -15.79448 -15.45851 -15.25433 -15.01139 -14.77754 -14.47213 -14.05347 -13.80356 -13.57707 -13.34325 -13.15439 -13.11194 -13.05423 -12.92913 -12.82860 -12.79828 -12.75686 -12.62154 -12.31531 -12.25732 -11.96001 -11.94243 -11.67720 -11.46509 -11.31453 -10.92700 -10.83302 -10.48181 -10.32357 -9.90329 -9.34787 -9.00325 -8.05009 -6.14527 1.43674 1.45921 1.54379 2.46744 2.58244 2.72354 3.22757 3.36663 3.61510 3.63909 3.78422 3.88332 3.94701 4.10287 4.11012 4.16425 4.21368 4.29812 4.36412 4.41468 4.46049 4.47816 4.58152 4.64325 4.65183 4.67497 4.70351 4.72277 4.76699 4.81000 4.95095 4.97587 4.99796 5.03179 5.10966 5.12821 5.18936 5.22493 5.28763 5.29657 5.62483 5.68848 5.82484 5.91386 5.95670 6.25925 6.40515 6.58449 6.74443 6.92376 6.95462 7.52525 9.02425 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.017700 B = 0.002800 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.564643 B = 9996.965515 C =10382.538166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.089 3.911 3 H 0.056 0.944 4 C 0.025 3.975 5 N -0.539 5.539 6 C 0.034 3.966 7 C 0.129 3.871 8 H 0.088 0.912 9 O -0.562 6.562 10 C 0.029 3.971 11 N -0.676 5.676 12 C 0.120 3.880 13 C 0.023 3.977 14 C -0.487 4.487 15 H 0.047 0.953 16 C 0.028 3.972 17 N -0.909 5.909 18 Si 0.943 3.057 19 H -0.274 1.274 20 H -0.289 1.289 21 H -0.274 1.274 22 C -0.189 4.189 23 C -0.164 4.164 24 C 0.027 3.973 25 C 0.085 3.915 26 H 0.058 0.942 27 C -0.138 4.138 28 O -0.396 6.396 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.377 0.623 37 H 0.026 0.974 38 H 0.079 0.921 39 H 0.346 0.654 40 H 0.000 1.000 41 H 0.054 0.946 42 H 0.257 0.743 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.040 0.960 48 H 0.096 0.904 49 H 0.090 0.910 50 H 0.066 0.934 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.214 -8.460 20.115 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.031 3.969 3 H 0.074 0.926 4 C -0.103 4.103 5 N -0.263 5.263 6 C -0.095 4.095 7 C 0.069 3.931 8 H 0.106 0.894 9 O -0.367 6.367 10 C -0.101 4.101 11 N -0.308 5.308 12 C -0.010 4.010 13 C 0.022 3.978 14 C -0.525 4.525 15 H 0.065 0.935 16 C -0.172 4.172 17 N -0.548 5.548 18 Si 0.769 3.231 19 H -0.200 1.200 20 H -0.215 1.215 21 H -0.199 1.199 22 C -0.226 4.226 23 C -0.202 4.202 24 C -0.101 4.101 25 C 0.027 3.973 26 H 0.076 0.924 27 C -0.196 4.196 28 O -0.316 6.316 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.224 0.776 37 H 0.044 0.956 38 H 0.098 0.902 39 H 0.166 0.834 40 H 0.018 0.982 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.058 0.942 48 H 0.114 0.886 49 H 0.108 0.892 50 H 0.085 0.915 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.200 -7.899 19.965 22.983 hybrid contribution 1.834 -0.038 -0.323 1.862 sum -6.367 -7.936 19.641 22.120 Atomic orbital electron populations 1.21743 0.91378 1.03166 1.03468 1.22178 0.95872 0.95014 0.83793 0.92561 1.22849 0.87792 0.99990 0.99659 1.62055 1.09019 1.53165 1.02080 1.22734 1.01313 0.95481 0.89926 1.21755 0.95800 0.85328 0.90253 0.89411 1.86616 1.24284 1.33120 1.92674 1.22642 0.98998 0.96459 0.92017 1.60316 1.61577 1.07018 1.01934 1.21173 0.94428 0.95036 0.90344 1.18981 0.97429 0.94166 0.87223 1.20558 0.93088 0.93171 1.45714 0.93494 1.25552 0.96252 1.00577 0.94783 1.70113 0.98995 1.37450 1.48240 0.85790 0.77294 0.81772 0.78207 1.19976 1.21520 1.19932 1.22988 0.91062 1.01308 1.07202 1.22398 0.96831 0.99183 1.01757 1.22869 1.01650 0.95780 0.89836 1.22264 0.80651 0.99131 0.95204 0.92356 1.21737 1.02492 1.00160 0.95172 1.87951 1.21837 1.78515 1.43308 0.91795 0.89745 0.91240 0.94065 0.89832 0.89337 0.92883 0.77579 0.95631 0.90218 0.83394 0.98227 0.92804 0.93401 0.89381 0.91151 0.92557 0.91059 0.94175 0.88564 0.89173 0.91493 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.57 71.98 0.69 -1.56 16 2 C 0.09 1.82 3.43 30.63 0.10 1.93 16 3 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 4 C 0.03 0.53 4.75 86.32 0.41 0.94 16 5 N -0.54 -11.52 4.54 -895.20 -4.06 -15.58 16 6 C 0.03 0.70 4.66 86.30 0.40 1.10 16 7 C 0.13 3.40 3.29 30.59 0.10 3.50 16 8 H 0.09 2.57 6.86 -2.39 -0.02 2.55 16 9 O -0.56 -16.95 12.55 -148.98 -1.87 -18.81 16 10 C 0.03 0.87 5.38 86.30 0.46 1.34 16 11 N -0.68 -26.92 6.26 -513.87 -3.22 -30.14 16 12 C 0.12 5.24 5.80 86.30 0.50 5.74 16 13 C 0.02 1.11 1.81 -52.93 -0.10 1.01 16 14 C -0.49 -26.39 7.48 25.60 0.19 -26.20 16 15 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 16 C 0.03 1.52 5.42 84.65 0.46 1.98 16 17 N -0.91 -51.31 12.73 21.45 0.27 -51.04 16 18 Si 0.94 43.73 29.54 68.60 2.03 45.76 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 22 C -0.19 -8.26 9.88 30.59 0.30 -7.96 16 23 C -0.16 -7.80 9.26 30.59 0.28 -7.52 16 24 C 0.03 0.48 4.89 86.31 0.42 0.90 16 25 C 0.09 1.56 3.42 30.63 0.10 1.66 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 C -0.14 -1.81 9.57 71.98 0.69 -1.12 16 28 O -0.40 -8.66 10.11 -148.98 -1.51 -10.16 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 0.85 8.13 -2.39 -0.02 0.83 16 33 H 0.08 1.85 6.78 -2.39 -0.02 1.83 16 34 H 0.09 1.60 7.87 -2.38 -0.02 1.59 16 35 H 0.05 1.01 8.00 -2.39 -0.02 1.00 16 36 H 0.38 9.28 9.05 -74.05 -0.67 8.61 16 37 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.35 15.50 7.11 -89.69 -0.64 14.86 16 40 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 42 H 0.26 13.96 8.32 -92.71 -0.77 13.19 16 43 H 0.09 3.38 8.08 -2.39 -0.02 3.36 16 44 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16 45 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 46 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 47 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.10 1.47 8.02 -2.38 -0.02 1.45 16 49 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -62.07 401.76 -3.75 -65.82 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: -0.42 Total: 38.40 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 5.03 Total: -24.25 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -7.00 Total: -96.75 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -3.38 Total: -28.98 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -62.07 -3.75 -65.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568619854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.632 kcal (2) G-P(sol) polarization free energy of solvation -62.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds