Wall clock time and date at job start Fri Apr 10 2020 18:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00150 * 2 1 4 4 C 1.50701 * 119.99938 * 180.02562 * 2 1 3 5 5 H 1.09003 * 110.33304 * 352.74169 * 4 2 1 6 6 O 1.44434 * 110.46595 * 230.43533 * 4 2 1 7 7 C 1.44423 * 105.27262 * 200.60663 * 6 4 2 8 8 C 1.54799 * 104.80453 * 40.58702 * 7 6 4 9 9 C 1.54478 * 110.37573 * 114.99811 * 4 2 1 10 10 H 1.08996 * 110.50665 * 24.13798 * 9 4 2 11 11 C 1.52998 * 110.51115 * 261.56608 * 9 4 2 12 12 N 1.46897 * 109.47242 * 176.90193 * 11 9 4 13 13 C 1.46900 * 111.00100 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47004 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.47628 * 305.00146 * 14 13 12 16 16 O 1.42903 * 109.47006 * 65.00410 * 14 13 12 17 17 C 1.53001 * 109.47341 * 185.00046 * 14 13 12 18 18 N 1.46897 * 109.47528 * 180.02562 * 17 14 13 19 19 C 1.46906 * 110.99814 * 293.95568 * 18 17 14 20 20 C 1.46905 * 111.00158 * 170.00206 * 18 17 14 21 21 C 1.50695 * 109.46944 * 189.99717 * 20 18 17 22 22 H 1.08001 * 120.00376 * 0.02562 * 21 20 18 23 23 C 1.37879 * 119.99938 * 179.97438 * 21 20 18 24 24 N 1.31517 * 119.99874 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00221 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46864 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47065 * 119.99864 * 25 23 21 28 28 H 1.48496 * 109.47109 * 239.99905 * 25 23 21 29 29 H 1.07999 * 120.00221 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99676 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.47362 * 270.00283 * 3 2 1 32 32 H 1.09001 * 109.47088 * 30.00403 * 3 2 1 33 33 H 1.08999 * 109.47336 * 150.00403 * 3 2 1 34 34 H 1.08997 * 110.36639 * 159.33944 * 7 6 4 35 35 H 1.08997 * 110.37321 * 281.56565 * 7 6 4 36 36 H 1.08997 * 110.55563 * 217.33533 * 8 7 6 37 37 H 1.09001 * 110.60869 * 94.51984 * 8 7 6 38 38 H 1.09007 * 109.47229 * 56.90084 * 11 9 4 39 39 H 1.08998 * 109.47234 * 296.90446 * 11 9 4 40 40 H 1.00903 * 110.99977 * 56.04263 * 12 11 9 41 41 H 1.09006 * 109.46635 * 60.00172 * 13 12 11 42 42 H 1.08993 * 109.47126 * 300.00378 * 13 12 11 43 43 H 0.96698 * 114.00172 * 59.99921 * 16 14 13 44 44 H 1.09009 * 109.46667 * 60.00059 * 17 14 13 45 45 H 1.09002 * 109.47365 * 300.00556 * 17 14 13 46 46 H 1.08992 * 109.47459 * 59.99744 * 19 18 17 47 47 H 1.09004 * 109.47040 * 179.97438 * 19 18 17 48 48 H 1.09000 * 109.47033 * 299.99847 * 19 18 17 49 49 H 1.09002 * 109.46783 * 309.99945 * 20 18 17 50 50 H 1.09002 * 109.46955 * 69.99566 * 20 18 17 51 51 H 0.97002 * 120.00020 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3748 -2.1401 0.1282 6 8 3.0624 -1.3120 1.0426 7 6 4.0123 -2.3278 0.6531 8 6 4.1757 -2.1510 -0.8761 9 6 2.8624 -1.4644 -1.3131 10 1 3.0696 -0.4896 -1.7547 11 6 2.0988 -2.3478 -2.3017 12 7 2.8423 -2.4234 -3.5663 13 6 2.1376 -3.2660 -4.5418 14 6 2.9404 -3.3199 -5.8431 15 1 3.1256 -2.3061 -6.1981 16 8 4.1871 -3.9771 -5.6068 17 6 2.1484 -4.0933 -6.8993 18 7 2.9194 -4.1456 -8.1485 19 6 3.0659 -2.8059 -8.7332 20 6 2.3058 -5.0742 -9.1074 21 6 3.2429 -5.2899 -10.2677 22 1 4.1988 -4.7878 -10.2904 23 6 2.8803 -6.1291 -11.2998 24 7 1.7165 -6.7410 -11.2720 25 14 4.0422 -6.3971 -12.7378 26 1 5.2781 -5.6005 -12.5306 27 1 4.3917 -7.8374 -12.8300 28 1 3.3804 -5.9669 -13.9956 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 0.0004 31 1 2.2452 1.6198 -1.0276 32 1 1.4745 2.0647 0.5139 33 1 3.0160 1.1747 0.5138 34 1 4.9659 -2.1685 1.1564 35 1 3.6233 -3.3195 0.8838 36 1 4.2809 -3.1198 -1.3643 37 1 5.0320 -1.5146 -1.0994 38 1 1.1130 -1.9201 -2.4848 39 1 1.9887 -3.3487 -1.8845 40 1 3.7825 -2.7565 -3.4137 41 1 1.1520 -2.8450 -4.7404 42 1 2.0282 -4.2732 -4.1399 43 1 4.0986 -4.8859 -5.2883 44 1 1.1974 -3.5920 -7.0795 45 1 1.9631 -5.1071 -6.5443 46 1 3.5858 -2.1569 -8.0286 47 1 3.6410 -2.8735 -9.6567 48 1 2.0801 -2.3934 -8.9479 49 1 2.1105 -6.0274 -8.6159 50 1 1.3680 -4.6540 -9.4709 51 1 1.4612 -7.3311 -11.9983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570444703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:00 Heat of formation + Delta-G solvation = -80.167049 kcal Electronic energy + Delta-G solvation = -26176.857309 eV Core-core repulsion = 22497.327079 eV Total energy + Delta-G solvation = -3679.530230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.27551 -38.33426 -36.22029 -35.47701 -35.16235 -32.57685 -32.38652 -29.91560 -29.01656 -27.64352 -27.13018 -26.24967 -24.62025 -23.30180 -23.02218 -21.32090 -20.63098 -20.12578 -19.16744 -17.07194 -16.51948 -16.38658 -16.03674 -15.90732 -15.69361 -15.14339 -14.89306 -14.59880 -14.27569 -14.07696 -13.81042 -13.72795 -13.53321 -13.45562 -13.32253 -13.06838 -12.50211 -12.37086 -12.03376 -11.91064 -11.82636 -11.70777 -11.37948 -11.26486 -11.12920 -11.10961 -10.94275 -10.87619 -10.73424 -10.65848 -10.29012 -10.17883 -10.00914 -9.62970 -9.42800 -9.10939 -8.61242 -8.44141 -7.19478 -6.02992 -4.03777 1.77085 3.31224 3.38505 3.44273 3.59383 3.79126 4.14358 4.40498 4.47076 4.47457 4.60959 4.65684 4.70451 4.83796 4.88681 4.94487 5.05362 5.14740 5.21392 5.28548 5.30205 5.34731 5.36558 5.39795 5.41694 5.47706 5.53271 5.55867 5.64491 5.69413 5.71041 5.74917 5.88876 6.06636 6.21211 6.21695 6.32694 6.36473 6.40849 6.53381 6.79140 6.80134 7.22172 7.27069 7.33018 7.80553 7.94610 8.10013 8.20797 8.55672 9.04742 9.60476 11.08028 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.030185 B = 0.002003 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.396367 B =13972.286559 C =14296.859930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.115 4.115 3 C -0.117 4.117 4 C 0.115 3.885 5 H 0.072 0.928 6 O -0.366 6.366 7 C 0.043 3.957 8 C -0.152 4.152 9 C -0.111 4.111 10 H 0.096 0.904 11 C 0.068 3.932 12 N -0.683 5.683 13 C 0.028 3.972 14 C 0.114 3.886 15 H 0.103 0.897 16 O -0.546 6.546 17 C 0.025 3.975 18 N -0.529 5.529 19 C 0.036 3.964 20 C 0.192 3.808 21 C -0.504 4.504 22 H 0.065 0.935 23 C 0.053 3.947 24 N -0.900 5.900 25 Si 0.898 3.102 26 H -0.271 1.271 27 H -0.284 1.284 28 H -0.285 1.285 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.029 0.971 40 H 0.347 0.653 41 H 0.078 0.922 42 H 0.032 0.968 43 H 0.367 0.633 44 H 0.029 0.971 45 H 0.068 0.932 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.008 0.992 49 H 0.027 0.973 50 H -0.011 1.011 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 11.346 25.037 27.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.115 4.115 3 C -0.174 4.174 4 C 0.057 3.943 5 H 0.090 0.910 6 O -0.285 6.285 7 C -0.033 4.033 8 C -0.189 4.189 9 C -0.130 4.130 10 H 0.115 0.885 11 C -0.062 4.062 12 N -0.316 5.316 13 C -0.102 4.102 14 C 0.054 3.946 15 H 0.121 0.879 16 O -0.350 6.350 17 C -0.105 4.105 18 N -0.253 5.253 19 C -0.112 4.112 20 C 0.067 3.933 21 C -0.542 4.542 22 H 0.083 0.917 23 C -0.148 4.148 24 N -0.540 5.540 25 Si 0.726 3.274 26 H -0.196 1.196 27 H -0.210 1.210 28 H -0.211 1.211 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.167 0.833 41 H 0.097 0.903 42 H 0.050 0.950 43 H 0.213 0.787 44 H 0.047 0.953 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.027 0.973 49 H 0.045 0.955 50 H 0.007 0.993 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.040 12.336 24.775 27.677 hybrid contribution -0.604 -1.614 -0.716 1.866 sum -0.564 10.723 24.059 26.346 Atomic orbital electron populations 1.23725 0.94930 1.02289 1.01208 1.21508 0.94930 0.94962 1.00142 1.20786 1.00731 0.93724 1.02146 1.21988 0.90427 0.95256 0.86614 0.90971 1.89161 1.37150 1.57688 1.44483 1.23479 0.93522 0.91846 0.94492 1.23083 0.98353 1.01606 0.95909 1.22564 0.94474 1.01075 0.94859 0.88548 1.21936 0.97674 0.97305 0.89251 1.60380 1.06166 1.55507 1.09502 1.22698 0.98745 0.95049 0.93732 1.21980 0.84019 0.97394 0.91212 0.87879 1.86598 1.29430 1.30115 1.88834 1.22702 0.94790 0.99861 0.93150 1.62025 1.50009 1.08914 1.04395 1.22251 0.98844 0.90097 1.00020 1.19750 0.93223 0.90491 0.89835 1.21211 1.03130 1.26508 1.03393 0.91718 1.25009 0.95396 0.95866 0.98536 1.69972 1.20743 1.30394 1.32932 0.86429 0.80982 0.77936 0.82023 1.19601 1.21035 1.21140 0.88367 0.87768 0.91338 0.91904 0.91123 0.88951 0.92313 0.90510 0.90105 0.90755 0.95266 0.83309 0.90335 0.94990 0.78725 0.95308 0.91388 0.93359 0.90715 0.97339 0.95451 0.99312 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 13.91 29.01 0.40 -0.95 16 2 C -0.12 -0.96 5.13 -101.07 -0.52 -1.47 16 3 C -0.12 -0.89 9.45 36.00 0.34 -0.55 16 4 C 0.12 0.98 3.04 -27.11 -0.08 0.90 16 5 H 0.07 0.59 7.58 -51.93 -0.39 0.19 16 6 O -0.37 -3.55 10.78 -35.23 -0.38 -3.93 16 7 C 0.04 0.32 7.64 38.11 0.29 0.61 16 8 C -0.15 -1.10 6.27 -24.99 -0.16 -1.26 16 9 C -0.11 -0.90 2.84 -89.05 -0.25 -1.16 16 10 H 0.10 0.89 7.40 -51.93 -0.38 0.50 16 11 C 0.07 0.59 4.86 -3.83 -0.02 0.57 16 12 N -0.68 -7.03 6.50 -113.78 -0.74 -7.77 16 13 C 0.03 0.31 5.36 -3.83 -0.02 0.29 16 14 C 0.11 1.61 3.08 -26.73 -0.08 1.52 16 15 H 0.10 1.58 6.55 -51.93 -0.34 1.24 16 16 O -0.55 -8.10 12.72 -35.23 -0.45 -8.55 16 17 C 0.02 0.43 4.62 -3.83 -0.02 0.41 16 18 N -0.53 -11.49 4.62 -244.36 -1.13 -12.62 16 19 C 0.04 0.73 9.14 60.07 0.55 1.28 16 20 C 0.19 5.04 4.72 -4.98 -0.02 5.02 16 21 C -0.50 -14.31 8.46 -34.44 -0.29 -14.61 16 22 H 0.06 1.84 7.12 -52.49 -0.37 1.46 16 23 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 24 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 25 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H 0.10 0.65 7.87 -52.49 -0.41 0.23 16 30 H 0.10 0.65 8.04 -52.49 -0.42 0.23 16 31 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 32 H 0.06 0.41 8.06 -51.93 -0.42 -0.01 16 33 H 0.07 0.58 7.62 -51.93 -0.40 0.18 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.53 7.11 -51.93 -0.37 0.16 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.35 3.56 7.15 -39.29 -0.28 3.28 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.37 4.42 9.05 45.56 0.41 4.83 16 44 H 0.03 0.49 8.12 -51.92 -0.42 0.07 16 45 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 46 H 0.05 0.85 6.47 -51.93 -0.34 0.52 16 47 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 48 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 49 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 50 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 51 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 403.19 15.07 6.08 6.08 Total: -1.00 -31.54 403.19 -9.55 -41.09 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -8.67 Total: 3.03 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 0.02 Total: -7.98 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -1.13 Total: -46.54 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.83 Total: -12.48 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.54 -9.55 -41.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570444703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.075 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds