Wall clock time and date at job start Fri Apr 10 2020 18:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00150 * 2 1 4 4 C 1.50701 * 119.99938 * 180.02562 * 2 1 3 5 5 H 1.09003 * 110.33304 * 352.74169 * 4 2 1 6 6 O 1.44434 * 110.46595 * 230.43533 * 4 2 1 7 7 C 1.44423 * 105.27262 * 200.60663 * 6 4 2 8 8 C 1.54799 * 104.80453 * 40.58702 * 7 6 4 9 9 C 1.54478 * 110.37573 * 114.99811 * 4 2 1 10 10 H 1.08996 * 110.50665 * 24.13798 * 9 4 2 11 11 C 1.52998 * 110.51115 * 261.56608 * 9 4 2 12 12 N 1.46897 * 109.47242 * 176.90193 * 11 9 4 13 13 C 1.46900 * 111.00100 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47004 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.47628 * 305.00146 * 14 13 12 16 16 O 1.42903 * 109.47006 * 65.00410 * 14 13 12 17 17 C 1.53001 * 109.47341 * 185.00046 * 14 13 12 18 18 N 1.46897 * 109.47528 * 180.02562 * 17 14 13 19 19 C 1.46906 * 110.99814 * 293.95568 * 18 17 14 20 20 C 1.46905 * 111.00158 * 170.00206 * 18 17 14 21 21 C 1.50695 * 109.46944 * 189.99717 * 20 18 17 22 22 H 1.08001 * 120.00376 * 0.02562 * 21 20 18 23 23 C 1.37879 * 119.99938 * 179.97438 * 21 20 18 24 24 N 1.31517 * 119.99874 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00221 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46864 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47065 * 119.99864 * 25 23 21 28 28 H 1.48496 * 109.47109 * 239.99905 * 25 23 21 29 29 H 1.07999 * 120.00221 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99676 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.47362 * 270.00283 * 3 2 1 32 32 H 1.09001 * 109.47088 * 30.00403 * 3 2 1 33 33 H 1.08999 * 109.47336 * 150.00403 * 3 2 1 34 34 H 1.08997 * 110.36639 * 159.33944 * 7 6 4 35 35 H 1.08997 * 110.37321 * 281.56565 * 7 6 4 36 36 H 1.08997 * 110.55563 * 217.33533 * 8 7 6 37 37 H 1.09001 * 110.60869 * 94.51984 * 8 7 6 38 38 H 1.09007 * 109.47229 * 56.90084 * 11 9 4 39 39 H 1.08998 * 109.47234 * 296.90446 * 11 9 4 40 40 H 1.00903 * 110.99977 * 56.04263 * 12 11 9 41 41 H 1.09006 * 109.46635 * 60.00172 * 13 12 11 42 42 H 1.08993 * 109.47126 * 300.00378 * 13 12 11 43 43 H 0.96698 * 114.00172 * 59.99921 * 16 14 13 44 44 H 1.09009 * 109.46667 * 60.00059 * 17 14 13 45 45 H 1.09002 * 109.47365 * 300.00556 * 17 14 13 46 46 H 1.08992 * 109.47459 * 59.99744 * 19 18 17 47 47 H 1.09004 * 109.47040 * 179.97438 * 19 18 17 48 48 H 1.09000 * 109.47033 * 299.99847 * 19 18 17 49 49 H 1.09002 * 109.46783 * 309.99945 * 20 18 17 50 50 H 1.09002 * 109.46955 * 69.99566 * 20 18 17 51 51 H 0.97002 * 120.00020 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3748 -2.1401 0.1282 6 8 3.0624 -1.3120 1.0426 7 6 4.0123 -2.3278 0.6531 8 6 4.1757 -2.1510 -0.8761 9 6 2.8624 -1.4644 -1.3131 10 1 3.0696 -0.4896 -1.7547 11 6 2.0988 -2.3478 -2.3017 12 7 2.8423 -2.4234 -3.5663 13 6 2.1376 -3.2660 -4.5418 14 6 2.9404 -3.3199 -5.8431 15 1 3.1256 -2.3061 -6.1981 16 8 4.1871 -3.9771 -5.6068 17 6 2.1484 -4.0933 -6.8993 18 7 2.9194 -4.1456 -8.1485 19 6 3.0659 -2.8059 -8.7332 20 6 2.3058 -5.0742 -9.1074 21 6 3.2429 -5.2899 -10.2677 22 1 4.1988 -4.7878 -10.2904 23 6 2.8803 -6.1291 -11.2998 24 7 1.7165 -6.7410 -11.2720 25 14 4.0422 -6.3971 -12.7378 26 1 5.2781 -5.6005 -12.5306 27 1 4.3917 -7.8374 -12.8300 28 1 3.3804 -5.9669 -13.9956 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 0.0004 31 1 2.2452 1.6198 -1.0276 32 1 1.4745 2.0647 0.5139 33 1 3.0160 1.1747 0.5138 34 1 4.9659 -2.1685 1.1564 35 1 3.6233 -3.3195 0.8838 36 1 4.2809 -3.1198 -1.3643 37 1 5.0320 -1.5146 -1.0994 38 1 1.1130 -1.9201 -2.4848 39 1 1.9887 -3.3487 -1.8845 40 1 3.7825 -2.7565 -3.4137 41 1 1.1520 -2.8450 -4.7404 42 1 2.0282 -4.2732 -4.1399 43 1 4.0986 -4.8859 -5.2883 44 1 1.1974 -3.5920 -7.0795 45 1 1.9631 -5.1071 -6.5443 46 1 3.5858 -2.1569 -8.0286 47 1 3.6410 -2.8735 -9.6567 48 1 2.0801 -2.3934 -8.9479 49 1 2.1105 -6.0274 -8.6159 50 1 1.3680 -4.6540 -9.4709 51 1 1.4612 -7.3311 -11.9983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570444703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:59 Heat of formation + Delta-G solvation = -104.285186 kcal Electronic energy + Delta-G solvation = -26177.903150 eV Core-core repulsion = 22497.327079 eV Total energy + Delta-G solvation = -3680.576071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.91257 -39.57812 -37.53125 -36.33048 -36.03518 -34.62091 -33.22971 -31.03209 -29.87482 -28.98278 -28.21722 -27.55119 -25.95231 -24.35114 -23.85306 -22.61321 -21.83711 -21.21125 -19.76853 -18.57800 -17.87656 -17.25076 -17.01339 -16.79817 -16.72467 -16.46235 -16.11573 -15.85509 -15.65094 -15.13986 -14.87407 -14.75143 -14.34279 -14.29937 -14.20065 -14.01549 -13.85975 -13.60963 -13.32463 -13.12045 -12.83146 -12.69838 -12.58805 -12.53229 -12.45849 -12.36590 -12.31716 -12.01917 -11.91811 -11.73458 -11.62250 -11.55165 -11.38089 -10.80883 -10.70788 -10.63157 -10.01428 -9.40636 -8.96940 -8.21577 -6.31215 1.18958 1.40503 1.41143 1.55189 2.39767 2.85298 3.04859 3.10901 3.37799 3.54392 3.69974 3.82299 3.85766 3.99429 4.04374 4.10384 4.16229 4.25192 4.27371 4.33393 4.41061 4.44885 4.56041 4.58592 4.68322 4.71974 4.72881 4.78292 4.80925 4.81619 4.85472 4.91728 4.99481 5.06539 5.11396 5.12762 5.14737 5.17130 5.24252 5.31924 5.63996 5.64546 5.77801 5.93210 5.99353 6.05351 6.31620 6.42885 6.62990 6.85164 6.95628 7.38516 8.89575 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.030185 B = 0.002003 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.396367 B =13972.286559 C =14296.859930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.135 4.135 3 C -0.114 4.114 4 C 0.115 3.885 5 H 0.075 0.925 6 O -0.387 6.387 7 C 0.040 3.960 8 C -0.148 4.148 9 C -0.104 4.104 10 H 0.085 0.915 11 C 0.073 3.927 12 N -0.688 5.688 13 C 0.039 3.961 14 C 0.129 3.871 15 H 0.094 0.906 16 O -0.559 6.559 17 C 0.024 3.976 18 N -0.539 5.539 19 C 0.041 3.959 20 C 0.207 3.793 21 C -0.522 4.522 22 H 0.061 0.939 23 C 0.000 4.000 24 N -0.935 5.935 25 Si 0.970 3.030 26 H -0.265 1.265 27 H -0.277 1.277 28 H -0.278 1.278 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.349 0.651 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.379 0.621 44 H 0.032 0.968 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.054 0.946 48 H 0.010 0.990 49 H 0.005 0.995 50 H -0.040 1.040 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 11.627 25.674 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.135 4.135 3 C -0.171 4.171 4 C 0.057 3.943 5 H 0.093 0.907 6 O -0.306 6.306 7 C -0.036 4.036 8 C -0.186 4.186 9 C -0.123 4.123 10 H 0.103 0.897 11 C -0.056 4.056 12 N -0.321 5.321 13 C -0.091 4.091 14 C 0.069 3.931 15 H 0.112 0.888 16 O -0.365 6.365 17 C -0.105 4.105 18 N -0.263 5.263 19 C -0.108 4.108 20 C 0.081 3.919 21 C -0.560 4.560 22 H 0.079 0.921 23 C -0.198 4.198 24 N -0.575 5.575 25 Si 0.794 3.206 26 H -0.189 1.189 27 H -0.203 1.203 28 H -0.204 1.204 29 H 0.123 0.877 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.168 0.832 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.227 0.773 44 H 0.050 0.950 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.029 0.971 49 H 0.023 0.977 50 H -0.022 1.022 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.649 12.626 25.439 28.408 hybrid contribution -0.826 -1.684 -0.844 2.057 sum -0.177 10.942 24.596 26.920 Atomic orbital electron populations 1.23907 0.94729 1.03132 0.99932 1.21653 0.95431 0.95143 1.01313 1.20759 1.00351 0.93833 1.02169 1.22014 0.90331 0.95526 0.86389 0.90680 1.89142 1.37829 1.58484 1.45156 1.23617 0.93685 0.91776 0.94540 1.23061 0.97824 1.01773 0.95955 1.22458 0.94867 1.00441 0.94576 0.89695 1.21901 0.97368 0.97774 0.88569 1.60342 1.06338 1.55301 1.10125 1.22496 0.98178 0.95980 0.92458 1.21766 0.83685 0.96025 0.91634 0.88822 1.86563 1.29790 1.31206 1.88947 1.22826 0.95067 1.00708 0.91926 1.61940 1.50412 1.09093 1.04831 1.22218 0.98976 0.89673 0.99894 1.19404 0.91888 0.90404 0.90224 1.21495 1.03288 1.26721 1.04481 0.92099 1.25926 0.97051 0.95415 1.01425 1.70088 1.22477 1.30947 1.34028 0.85322 0.78851 0.78056 0.78321 1.18869 1.20300 1.20364 0.87717 0.86788 0.91261 0.91078 0.92093 0.87924 0.91492 0.89891 0.90141 0.90954 0.94474 0.83168 0.90046 0.93865 0.77304 0.95014 0.91323 0.90617 0.92680 0.97114 0.97719 1.02205 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 13.91 67.78 0.94 -1.46 16 2 C -0.14 -2.11 5.13 -16.49 -0.08 -2.20 16 3 C -0.11 -1.66 9.45 71.24 0.67 -0.99 16 4 C 0.12 1.84 3.04 30.35 0.09 1.93 16 5 H 0.08 1.12 7.58 -2.39 -0.02 1.10 16 6 O -0.39 -7.17 10.78 -148.98 -1.61 -8.78 16 7 C 0.04 0.53 7.64 72.60 0.55 1.09 16 8 C -0.15 -1.94 6.27 31.72 0.20 -1.74 16 9 C -0.10 -1.57 2.84 -9.78 -0.03 -1.60 16 10 H 0.08 1.49 7.40 -2.39 -0.02 1.47 16 11 C 0.07 1.13 4.86 86.30 0.42 1.55 16 12 N -0.69 -12.83 6.50 -513.90 -3.34 -16.17 16 13 C 0.04 0.79 5.36 86.30 0.46 1.25 16 14 C 0.13 3.43 3.08 30.59 0.09 3.53 16 15 H 0.09 2.71 6.55 -2.39 -0.02 2.69 16 16 O -0.56 -15.65 12.72 -148.98 -1.90 -17.55 16 17 C 0.02 0.81 4.62 86.30 0.40 1.21 16 18 N -0.54 -23.41 4.62 -927.02 -4.28 -27.69 16 19 C 0.04 1.62 9.14 127.69 1.17 2.78 16 20 C 0.21 11.14 4.72 85.55 0.40 11.54 16 21 C -0.52 -30.00 8.46 25.60 0.22 -29.79 16 22 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 23 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 24 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 25 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 26 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 29 H 0.10 1.22 7.87 -2.91 -0.02 1.20 16 30 H 0.11 1.25 8.04 -2.91 -0.02 1.23 16 31 H 0.07 0.96 8.11 -2.39 -0.02 0.94 16 32 H 0.07 0.87 8.06 -2.39 -0.02 0.85 16 33 H 0.06 0.98 7.62 -2.39 -0.02 0.97 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.98 7.11 -2.39 -0.02 0.96 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.35 6.43 7.15 -89.69 -0.64 5.79 16 41 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.38 8.48 9.05 -74.06 -0.67 7.81 16 44 H 0.03 1.06 8.12 -2.38 -0.02 1.04 16 45 H 0.07 2.29 7.93 -2.39 -0.02 2.27 16 46 H 0.08 2.58 6.47 -2.39 -0.02 2.56 16 47 H 0.05 2.38 6.76 -2.38 -0.02 2.36 16 48 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.00 0.27 7.93 -2.39 -0.02 0.25 16 50 H -0.04 -2.32 8.12 -2.39 -0.02 -2.34 16 51 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -67.22 403.19 -3.26 -70.48 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.42 Total: 21.60 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 5.97 Total: -12.44 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -7.34 Total: -100.04 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -3.50 Total: -26.33 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -67.22 -3.26 -70.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570444703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.809 kcal (2) G-P(sol) polarization free energy of solvation -67.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds