Wall clock time and date at job start Fri Apr 10 2020 18:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99752 * 2 1 4 4 C 1.50700 * 109.47534 * 293.95954 * 3 2 1 5 5 H 1.08004 * 119.99791 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00111 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99798 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 120.00097 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47135 * 89.99725 * 8 6 4 10 10 H 1.48497 * 109.46909 * 209.99690 * 8 6 4 11 11 H 1.48499 * 109.46788 * 329.99675 * 8 6 4 12 12 C 1.46890 * 111.00615 * 123.95627 * 2 1 3 13 13 C 1.52996 * 109.47621 * 164.01140 * 12 2 1 14 14 H 1.09001 * 109.46800 * 58.51055 * 13 12 2 15 15 O 1.42896 * 109.46923 * 298.51468 * 13 12 2 16 16 C 1.53002 * 109.47206 * 178.51042 * 13 12 2 17 17 N 1.46897 * 109.46835 * 185.00084 * 16 13 12 18 18 C 1.46896 * 111.00153 * 179.97438 * 17 16 13 19 19 H 1.09000 * 109.55686 * 325.00147 * 18 17 16 20 20 C 1.53158 * 109.55282 * 85.20497 * 18 17 16 21 21 C 1.53052 * 109.40250 * 178.37862 * 20 18 17 22 22 O 1.43042 * 109.52972 * 300.82246 * 21 20 18 23 23 C 1.42582 * 113.84998 * 58.67435 * 22 21 20 24 24 C 1.53419 * 113.57341 * 73.88612 * 23 22 21 25 25 C 1.53849 * 86.97518 * 89.48394 * 24 23 22 26 26 C 1.53402 * 113.61933 * 171.80823 * 23 22 21 27 27 C 1.52816 * 112.93987 * 302.90535 * 23 22 21 28 28 H 1.08993 * 109.47102 * 301.52246 * 1 2 3 29 29 H 1.09001 * 109.47267 * 61.52910 * 1 2 3 30 30 H 1.09006 * 109.46652 * 181.52798 * 1 2 3 31 31 H 1.09009 * 109.46794 * 53.95659 * 3 2 1 32 32 H 1.08994 * 109.47466 * 173.95190 * 3 2 1 33 33 H 0.96998 * 120.00173 * 180.02562 * 7 6 4 34 34 H 1.09008 * 109.47134 * 44.01242 * 12 2 1 35 35 H 1.08998 * 109.47050 * 284.01711 * 12 2 1 36 36 H 0.96707 * 113.99797 * 299.99155 * 15 13 12 37 37 H 1.09004 * 109.47127 * 304.99610 * 16 13 12 38 38 H 1.08995 * 109.47182 * 65.00238 * 16 13 12 39 39 H 1.00897 * 111.00479 * 303.95542 * 17 16 13 40 40 H 1.09005 * 109.48236 * 298.45866 * 20 18 17 41 41 H 1.09003 * 109.48547 * 58.50050 * 20 18 17 42 42 H 1.09000 * 109.48011 * 180.78227 * 21 20 18 43 43 H 1.09001 * 109.39742 * 60.81823 * 21 20 18 44 44 H 1.09000 * 113.63497 * 203.99889 * 24 23 22 45 45 H 1.08999 * 113.63708 * 334.96414 * 24 23 22 46 46 H 1.09007 * 113.59983 * 270.59992 * 25 24 23 47 47 H 1.09002 * 113.68316 * 139.73849 * 25 24 23 48 48 H 1.09003 * 113.62564 * 25.08103 * 26 23 22 49 49 H 1.08999 * 113.63295 * 156.03531 * 26 23 22 50 50 H 1.09000 * 109.56372 * 294.10462 * 27 23 22 51 51 H 1.09000 * 109.65538 * 173.82152 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0473 -1.2984 5 1 1.0744 1.5114 -2.0487 6 6 2.0266 3.3497 -1.5283 7 7 1.7140 3.9392 -2.6616 8 14 2.9998 4.2763 -0.2308 9 1 4.4522 4.0638 -0.4559 10 1 2.6916 5.7260 -0.3224 11 1 2.6293 3.7756 1.1172 12 6 1.9956 -0.7659 1.1374 13 6 3.4729 -1.0839 0.8982 14 1 4.0282 -0.1548 0.7696 15 8 3.6035 -1.8836 -0.2788 16 6 4.0309 -1.8495 2.0997 17 7 5.4755 -2.0500 1.9244 18 6 6.0471 -2.7830 3.0619 19 1 5.5327 -2.4934 3.9782 20 6 5.8829 -4.2889 2.8360 21 6 6.5153 -5.0502 4.0034 22 8 7.9026 -4.7145 4.0976 23 6 8.1474 -3.3227 4.2875 24 6 7.8197 -2.8296 5.7028 25 6 9.2708 -3.1816 6.0734 26 6 9.6153 -2.9920 4.5861 27 6 7.5397 -2.4554 3.1858 28 1 -0.3633 0.5373 0.8760 29 1 -0.3634 0.4899 -0.9034 30 1 -0.3633 -1.0274 0.0274 31 1 1.5610 1.9273 0.8310 32 1 3.0796 1.3445 0.1083 33 1 1.9886 4.8553 -2.8236 34 1 1.4358 -1.6957 1.2397 35 1 1.8935 -0.1782 2.0497 36 1 3.1335 -2.7277 -0.2349 37 1 3.8513 -1.2777 3.0101 38 1 3.5362 -2.8177 2.1751 39 1 5.6723 -2.5216 1.0544 40 1 4.8225 -4.5335 2.7723 41 1 6.3781 -4.5734 1.9075 42 1 6.4115 -6.1224 3.8371 43 1 6.0113 -4.7756 4.9301 44 1 7.6023 -1.7628 5.7544 45 1 7.0772 -3.4396 6.2172 46 1 9.3955 -4.2065 6.4231 47 1 9.7452 -2.4505 6.7280 48 1 10.3168 -3.7328 4.2022 49 1 9.8940 -1.9701 4.3290 50 1 8.0391 -2.6642 2.2397 51 1 7.6625 -1.4022 3.4387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574869406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:21 Heat of formation + Delta-G solvation = -69.004608 kcal Electronic energy + Delta-G solvation = -26964.374260 eV Core-core repulsion = 23285.328070 eV Total energy + Delta-G solvation = -3679.046190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87492 -38.45264 -37.00894 -35.98598 -35.23097 -32.42414 -31.95768 -30.09112 -29.30636 -27.92948 -26.15121 -25.78346 -23.93780 -23.65308 -22.87753 -21.60138 -20.83571 -19.93343 -19.40936 -17.00224 -16.63653 -16.53851 -16.20476 -15.96751 -15.36232 -15.10041 -14.86387 -14.73251 -14.43234 -14.25779 -14.06691 -13.70956 -13.63950 -13.19330 -13.04793 -12.70109 -12.60721 -12.36279 -12.24094 -11.96887 -11.71780 -11.57148 -11.36631 -11.32889 -11.15293 -11.14529 -11.08013 -10.99858 -10.77280 -10.48356 -10.28198 -10.16703 -9.88199 -9.74422 -9.54988 -9.19087 -8.52817 -8.49931 -7.33874 -6.01109 -3.97751 3.30285 3.31766 3.38454 3.39763 3.79875 4.18068 4.29351 4.43175 4.45462 4.48064 4.56758 4.59338 4.71684 4.77160 4.85402 4.99068 5.03120 5.15135 5.22239 5.25445 5.30960 5.34669 5.37129 5.40196 5.48099 5.53036 5.55694 5.56943 5.59489 5.64179 5.69260 5.82734 5.90483 5.91351 5.95663 6.01248 6.02077 6.23800 6.39274 6.66414 6.85323 6.90567 6.96718 6.99173 7.28997 7.62533 7.87514 8.03046 8.06277 8.69727 9.07775 9.60668 11.12200 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.018180 B = 0.002724 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.784313 B =10277.349077 C =11240.324228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.521 5.521 3 C 0.161 3.839 4 C -0.505 4.505 5 H 0.080 0.920 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.024 3.976 13 C 0.113 3.887 14 H 0.109 0.891 15 O -0.539 6.539 16 C 0.030 3.970 17 N -0.678 5.678 18 C 0.088 3.912 19 H 0.076 0.924 20 C -0.186 4.186 21 C 0.066 3.934 22 O -0.357 6.357 23 C 0.093 3.907 24 C -0.165 4.165 25 C -0.136 4.136 26 C -0.125 4.125 27 C -0.121 4.121 28 H 0.010 0.990 29 H 0.079 0.921 30 H 0.045 0.955 31 H -0.014 1.014 32 H 0.026 0.974 33 H 0.263 0.737 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.360 0.640 37 H 0.076 0.924 38 H 0.030 0.970 39 H 0.350 0.650 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.095 0.905 50 H 0.073 0.927 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.089 -18.321 18.219 28.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.245 5.245 3 C 0.035 3.965 4 C -0.543 4.543 5 H 0.098 0.902 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.106 4.106 13 C 0.053 3.947 14 H 0.127 0.873 15 O -0.342 6.342 16 C -0.100 4.100 17 N -0.309 5.309 18 C -0.022 4.022 19 H 0.094 0.906 20 C -0.226 4.226 21 C -0.011 4.011 22 O -0.276 6.276 23 C 0.053 3.947 24 C -0.202 4.202 25 C -0.173 4.173 26 C -0.162 4.162 27 C -0.159 4.159 28 H 0.029 0.971 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.003 0.997 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.205 0.795 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.170 0.830 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.095 0.905 49 H 0.114 0.886 50 H 0.092 0.908 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.925 -17.354 17.710 27.514 hybrid contribution -0.813 -0.177 1.463 1.683 sum 11.111 -17.531 19.173 28.256 Atomic orbital electron populations 1.22231 0.88179 0.99193 1.01323 1.61862 1.06963 1.16514 1.39156 1.20237 0.95075 0.83980 0.97212 1.21014 1.35450 0.97058 1.00827 0.90164 1.24897 0.95815 0.97389 0.95283 1.69894 1.47057 1.13263 1.23840 0.86884 0.81108 0.79238 0.82675 1.19992 1.21233 1.19411 1.22719 0.95950 0.98425 0.93513 1.21996 0.94626 0.94675 0.83377 0.87310 1.86715 1.75149 1.33330 1.38997 1.22710 0.88189 0.98941 1.00182 1.60445 1.12363 1.53137 1.04918 1.21605 0.95554 0.90174 0.94856 0.90578 1.22937 1.01607 0.97666 1.00361 1.22483 0.82078 0.99600 0.96953 1.87898 1.24210 1.22415 1.93068 1.22278 0.96845 0.82061 0.93536 1.23501 0.97696 1.01929 0.97108 1.22794 0.96204 1.01928 0.96387 1.22956 0.94645 1.02324 0.96286 1.22020 0.94689 1.00073 0.99129 0.97103 0.90184 0.93619 0.99669 0.95628 0.92718 0.91875 0.95106 0.79451 0.90527 0.95225 0.82979 0.91006 0.90660 0.88860 0.93160 0.89170 0.91260 0.89977 0.91342 0.90528 0.88645 0.90842 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.33 60.07 0.56 1.31 16 2 N -0.52 -10.93 4.60 -244.37 -1.12 -12.05 16 3 C 0.16 3.98 3.64 -4.98 -0.02 3.96 16 4 C -0.51 -14.67 9.09 -34.44 -0.31 -14.98 16 5 H 0.08 2.54 7.34 -52.48 -0.39 2.15 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 8 Si 0.87 21.91 27.47 -169.99 -4.67 17.25 16 9 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 11 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 12 C 0.02 0.38 4.63 -3.83 -0.02 0.37 16 13 C 0.11 1.72 3.23 -26.73 -0.09 1.64 16 14 H 0.11 2.01 6.55 -51.93 -0.34 1.67 16 15 O -0.54 -8.50 12.75 -35.23 -0.45 -8.95 16 16 C 0.03 0.34 5.16 -3.82 -0.02 0.32 16 17 N -0.68 -7.72 6.26 -106.47 -0.67 -8.39 16 18 C 0.09 0.84 2.48 -67.47 -0.17 0.67 16 19 H 0.08 0.73 7.77 -51.93 -0.40 0.33 16 20 C -0.19 -1.54 5.35 -26.62 -0.14 -1.69 16 21 C 0.07 0.53 6.73 37.18 0.25 0.78 16 22 O -0.36 -3.54 10.45 -35.23 -0.37 -3.91 16 23 C 0.09 0.82 1.03 -90.29 -0.09 0.72 16 24 C -0.16 -1.28 7.12 -26.07 -0.19 -1.46 16 25 C -0.14 -0.98 8.02 -25.85 -0.21 -1.19 16 26 C -0.12 -0.97 7.47 -26.08 -0.19 -1.16 16 27 C -0.12 -1.14 4.88 -26.66 -0.13 -1.27 16 28 H 0.01 0.20 8.13 -51.93 -0.42 -0.23 16 29 H 0.08 1.71 6.90 -51.93 -0.36 1.35 16 30 H 0.04 0.73 7.97 -51.93 -0.41 0.31 16 31 H -0.01 -0.36 7.17 -51.92 -0.37 -0.73 16 32 H 0.03 0.64 5.81 -51.93 -0.30 0.34 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.06 0.86 7.88 -51.92 -0.41 0.45 16 35 H 0.03 0.49 8.05 -51.93 -0.42 0.08 16 36 H 0.36 4.22 9.05 45.56 0.41 4.64 16 37 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 38 H 0.03 0.30 7.49 -51.93 -0.39 -0.09 16 39 H 0.35 4.09 8.02 -39.29 -0.32 3.78 16 40 H 0.07 0.55 7.52 -51.93 -0.39 0.16 16 41 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.37 7.21 -51.93 -0.37 0.00 16 44 H 0.09 0.67 8.02 -51.93 -0.42 0.25 16 45 H 0.07 0.54 7.26 -51.93 -0.38 0.16 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.08 0.79 8.05 -51.93 -0.42 0.38 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -32.48 389.30 -10.13 -42.61 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.63 Total: 4.97 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -0.86 Total: -10.09 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -1.02 Total: -47.75 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.82 Total: -12.86 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.48 -10.13 -42.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574869406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.391 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds