Wall clock time and date at job start Fri Apr 10 2020 18:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99752 * 2 1 4 4 C 1.50700 * 109.47534 * 293.95954 * 3 2 1 5 5 H 1.08004 * 119.99791 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00111 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99798 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 120.00097 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47135 * 89.99725 * 8 6 4 10 10 H 1.48497 * 109.46909 * 209.99690 * 8 6 4 11 11 H 1.48499 * 109.46788 * 329.99675 * 8 6 4 12 12 C 1.46890 * 111.00615 * 123.95627 * 2 1 3 13 13 C 1.52996 * 109.47621 * 164.01140 * 12 2 1 14 14 H 1.09001 * 109.46800 * 58.51055 * 13 12 2 15 15 O 1.42896 * 109.46923 * 298.51468 * 13 12 2 16 16 C 1.53002 * 109.47206 * 178.51042 * 13 12 2 17 17 N 1.46897 * 109.46835 * 185.00084 * 16 13 12 18 18 C 1.46896 * 111.00153 * 179.97438 * 17 16 13 19 19 H 1.09000 * 109.55686 * 325.00147 * 18 17 16 20 20 C 1.53158 * 109.55282 * 85.20497 * 18 17 16 21 21 C 1.53052 * 109.40250 * 178.37862 * 20 18 17 22 22 O 1.43042 * 109.52972 * 300.82246 * 21 20 18 23 23 C 1.42582 * 113.84998 * 58.67435 * 22 21 20 24 24 C 1.53419 * 113.57341 * 73.88612 * 23 22 21 25 25 C 1.53849 * 86.97518 * 89.48394 * 24 23 22 26 26 C 1.53402 * 113.61933 * 171.80823 * 23 22 21 27 27 C 1.52816 * 112.93987 * 302.90535 * 23 22 21 28 28 H 1.08993 * 109.47102 * 301.52246 * 1 2 3 29 29 H 1.09001 * 109.47267 * 61.52910 * 1 2 3 30 30 H 1.09006 * 109.46652 * 181.52798 * 1 2 3 31 31 H 1.09009 * 109.46794 * 53.95659 * 3 2 1 32 32 H 1.08994 * 109.47466 * 173.95190 * 3 2 1 33 33 H 0.96998 * 120.00173 * 180.02562 * 7 6 4 34 34 H 1.09008 * 109.47134 * 44.01242 * 12 2 1 35 35 H 1.08998 * 109.47050 * 284.01711 * 12 2 1 36 36 H 0.96707 * 113.99797 * 299.99155 * 15 13 12 37 37 H 1.09004 * 109.47127 * 304.99610 * 16 13 12 38 38 H 1.08995 * 109.47182 * 65.00238 * 16 13 12 39 39 H 1.00897 * 111.00479 * 303.95542 * 17 16 13 40 40 H 1.09005 * 109.48236 * 298.45866 * 20 18 17 41 41 H 1.09003 * 109.48547 * 58.50050 * 20 18 17 42 42 H 1.09000 * 109.48011 * 180.78227 * 21 20 18 43 43 H 1.09001 * 109.39742 * 60.81823 * 21 20 18 44 44 H 1.09000 * 113.63497 * 203.99889 * 24 23 22 45 45 H 1.08999 * 113.63708 * 334.96414 * 24 23 22 46 46 H 1.09007 * 113.59983 * 270.59992 * 25 24 23 47 47 H 1.09002 * 113.68316 * 139.73849 * 25 24 23 48 48 H 1.09003 * 113.62564 * 25.08103 * 26 23 22 49 49 H 1.08999 * 113.63295 * 156.03531 * 26 23 22 50 50 H 1.09000 * 109.56372 * 294.10462 * 27 23 22 51 51 H 1.09000 * 109.65538 * 173.82152 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0473 -1.2984 5 1 1.0744 1.5114 -2.0487 6 6 2.0266 3.3497 -1.5283 7 7 1.7140 3.9392 -2.6616 8 14 2.9998 4.2763 -0.2308 9 1 4.4522 4.0638 -0.4559 10 1 2.6916 5.7260 -0.3224 11 1 2.6293 3.7756 1.1172 12 6 1.9956 -0.7659 1.1374 13 6 3.4729 -1.0839 0.8982 14 1 4.0282 -0.1548 0.7696 15 8 3.6035 -1.8836 -0.2788 16 6 4.0309 -1.8495 2.0997 17 7 5.4755 -2.0500 1.9244 18 6 6.0471 -2.7830 3.0619 19 1 5.5327 -2.4934 3.9782 20 6 5.8829 -4.2889 2.8360 21 6 6.5153 -5.0502 4.0034 22 8 7.9026 -4.7145 4.0976 23 6 8.1474 -3.3227 4.2875 24 6 7.8197 -2.8296 5.7028 25 6 9.2708 -3.1816 6.0734 26 6 9.6153 -2.9920 4.5861 27 6 7.5397 -2.4554 3.1858 28 1 -0.3633 0.5373 0.8760 29 1 -0.3634 0.4899 -0.9034 30 1 -0.3633 -1.0274 0.0274 31 1 1.5610 1.9273 0.8310 32 1 3.0796 1.3445 0.1083 33 1 1.9886 4.8553 -2.8236 34 1 1.4358 -1.6957 1.2397 35 1 1.8935 -0.1782 2.0497 36 1 3.1335 -2.7277 -0.2349 37 1 3.8513 -1.2777 3.0101 38 1 3.5362 -2.8177 2.1751 39 1 5.6723 -2.5216 1.0544 40 1 4.8225 -4.5335 2.7723 41 1 6.3781 -4.5734 1.9075 42 1 6.4115 -6.1224 3.8371 43 1 6.0113 -4.7756 4.9301 44 1 7.6023 -1.7628 5.7544 45 1 7.0772 -3.4396 6.2172 46 1 9.3955 -4.2065 6.4231 47 1 9.7452 -2.4505 6.7280 48 1 10.3168 -3.7328 4.2022 49 1 9.8940 -1.9701 4.3290 50 1 8.0391 -2.6642 2.2397 51 1 7.6625 -1.4022 3.4387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574869406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:19 Heat of formation + Delta-G solvation = -95.168563 kcal Electronic energy + Delta-G solvation = -26965.508815 eV Core-core repulsion = 23285.328070 eV Total energy + Delta-G solvation = -3680.180745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.53146 -39.64477 -37.97259 -37.07113 -36.24782 -34.59560 -32.87961 -30.84255 -30.55530 -29.75660 -26.99541 -26.73946 -25.23634 -24.37150 -24.04720 -22.77040 -21.77403 -21.36876 -20.04379 -19.06570 -17.62080 -17.31619 -17.14963 -16.99710 -16.45520 -16.24070 -16.06035 -15.89368 -15.61563 -15.27549 -15.08161 -14.81025 -14.71284 -14.49457 -14.37912 -13.98574 -13.72292 -13.34600 -13.26671 -13.16321 -12.97935 -12.63766 -12.61029 -12.40362 -12.37366 -12.25961 -12.04650 -11.87330 -11.76453 -11.74927 -11.68985 -11.62609 -11.44366 -11.01152 -10.77748 -10.68260 -10.29520 -9.32089 -8.96470 -8.28629 -6.31242 1.32774 1.34776 1.44367 2.33421 2.68876 2.87188 3.04704 3.33298 3.55082 3.66622 3.71019 3.77109 3.88938 3.93116 3.99723 4.08809 4.10863 4.14568 4.31287 4.33722 4.41518 4.44869 4.51997 4.59855 4.62260 4.69714 4.72003 4.78530 4.80594 4.82987 4.87039 4.90129 4.91580 4.99520 5.01560 5.04274 5.13517 5.18245 5.20294 5.23408 5.35769 5.39882 5.55497 5.96767 6.08768 6.33287 6.37381 6.41950 6.65728 6.74810 7.03964 7.31899 8.88271 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.018180 B = 0.002724 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.784313 B =10277.349077 C =11240.324228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.542 5.542 3 C 0.173 3.827 4 C -0.514 4.514 5 H 0.036 0.964 6 C 0.006 3.994 7 N -0.949 5.949 8 Si 0.945 3.055 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.251 1.251 12 C 0.025 3.975 13 C 0.119 3.881 14 H 0.070 0.930 15 O -0.561 6.561 16 C 0.044 3.956 17 N -0.692 5.692 18 C 0.092 3.908 19 H 0.080 0.920 20 C -0.179 4.179 21 C 0.063 3.937 22 O -0.375 6.375 23 C 0.088 3.912 24 C -0.161 4.161 25 C -0.131 4.131 26 C -0.128 4.128 27 C -0.118 4.118 28 H 0.018 0.982 29 H 0.044 0.956 30 H 0.083 0.917 31 H -0.015 1.015 32 H 0.024 0.976 33 H 0.267 0.733 34 H 0.097 0.903 35 H 0.038 0.962 36 H 0.379 0.621 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.347 0.653 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.103 0.897 50 H 0.059 0.941 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.539 -19.526 21.099 30.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.046 3.954 4 C -0.552 4.552 5 H 0.054 0.946 6 C -0.191 4.191 7 N -0.590 5.590 8 Si 0.769 3.231 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.175 1.175 12 C -0.104 4.104 13 C 0.059 3.941 14 H 0.088 0.912 15 O -0.367 6.367 16 C -0.086 4.086 17 N -0.323 5.323 18 C -0.018 4.018 19 H 0.098 0.902 20 C -0.218 4.218 21 C -0.014 4.014 22 O -0.294 6.294 23 C 0.048 3.952 24 C -0.199 4.199 25 C -0.169 4.169 26 C -0.165 4.165 27 C -0.157 4.157 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.003 0.997 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.057 0.943 36 H 0.227 0.773 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.166 0.834 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.124 0.876 43 H 0.077 0.923 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.089 0.911 49 H 0.121 0.879 50 H 0.078 0.922 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.361 -18.597 20.609 30.387 hybrid contribution -1.000 0.098 0.468 1.108 sum 11.362 -18.500 21.077 30.259 Atomic orbital electron populations 1.22193 0.87313 1.01248 0.99832 1.61724 1.07977 1.14568 1.42314 1.19939 0.94969 0.86014 0.94449 1.21274 1.34698 0.97384 1.01862 0.94550 1.25856 0.97034 0.98503 0.97710 1.70051 1.48742 1.13914 1.26262 0.85741 0.79410 0.77779 0.80193 1.19234 1.20442 1.17463 1.22840 0.96702 0.99053 0.91783 1.21820 0.93723 0.93893 0.84688 0.91158 1.86669 1.75751 1.34552 1.39708 1.22510 0.88303 0.99558 0.98225 1.60420 1.12484 1.53964 1.05401 1.21591 0.95239 0.90803 0.94156 0.90196 1.22856 1.02194 0.96689 1.00085 1.22620 0.81292 1.00331 0.97147 1.87880 1.25411 1.22937 1.93184 1.22353 0.97435 0.81615 0.93779 1.23484 0.98038 1.02146 0.96188 1.22770 0.95914 1.02105 0.96091 1.23019 0.94073 1.02603 0.96826 1.21984 0.94849 1.00021 0.98819 0.96396 0.93746 0.89848 0.99728 0.95780 0.92454 0.88451 0.94344 0.77344 0.90022 0.92743 0.83364 0.89890 0.91592 0.87628 0.92276 0.88742 0.91092 0.90264 0.90195 0.91080 0.87913 0.92189 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 9.33 127.69 1.19 2.77 16 2 N -0.54 -22.20 4.60 -927.06 -4.27 -26.47 16 3 C 0.17 8.53 3.64 85.56 0.31 8.84 16 4 C -0.51 -30.72 9.09 25.60 0.23 -30.49 16 5 H 0.04 2.42 7.34 -2.91 -0.02 2.40 16 6 C 0.01 0.36 5.47 84.65 0.46 0.82 16 7 N -0.95 -60.83 13.96 21.45 0.30 -60.54 16 8 Si 0.95 45.36 27.47 68.60 1.88 47.24 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 12 C 0.03 0.74 4.63 86.30 0.40 1.14 16 13 C 0.12 3.41 3.23 30.59 0.10 3.50 16 14 H 0.07 2.57 6.55 -2.39 -0.02 2.56 16 15 O -0.56 -16.91 12.75 -148.98 -1.90 -18.81 16 16 C 0.04 0.89 5.16 86.30 0.45 1.34 16 17 N -0.69 -14.60 6.26 -490.76 -3.07 -17.67 16 18 C 0.09 1.56 2.48 45.08 0.11 1.67 16 19 H 0.08 1.32 7.77 -2.39 -0.02 1.30 16 20 C -0.18 -2.58 5.35 30.66 0.16 -2.41 16 21 C 0.06 0.87 6.73 72.00 0.48 1.35 16 22 O -0.37 -6.91 10.45 -148.98 -1.56 -8.47 16 23 C 0.09 1.43 1.03 -10.58 -0.01 1.42 16 24 C -0.16 -2.19 7.12 31.02 0.22 -1.97 16 25 C -0.13 -1.67 8.02 31.17 0.25 -1.42 16 26 C -0.13 -1.85 7.47 31.01 0.23 -1.61 16 27 C -0.12 -2.11 4.88 30.64 0.15 -1.96 16 28 H 0.02 0.63 8.13 -2.39 -0.02 0.61 16 29 H 0.04 1.94 6.90 -2.39 -0.02 1.92 16 30 H 0.08 2.44 7.97 -2.38 -0.02 2.42 16 31 H -0.01 -0.73 7.17 -2.38 -0.02 -0.74 16 32 H 0.02 1.20 5.81 -2.39 -0.01 1.19 16 33 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 34 H 0.10 2.23 7.88 -2.38 -0.02 2.21 16 35 H 0.04 1.11 8.05 -2.39 -0.02 1.09 16 36 H 0.38 7.97 9.05 -74.05 -0.67 7.30 16 37 H 0.08 1.60 8.06 -2.39 -0.02 1.58 16 38 H 0.05 0.86 7.49 -2.39 -0.02 0.84 16 39 H 0.35 7.70 8.02 -89.70 -0.72 6.98 16 40 H 0.08 1.01 7.52 -2.38 -0.02 1.00 16 41 H 0.07 1.08 8.11 -2.39 -0.02 1.06 16 42 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 0.71 7.21 -2.39 -0.02 0.70 16 44 H 0.09 1.20 8.02 -2.39 -0.02 1.18 16 45 H 0.07 0.94 7.26 -2.39 -0.02 0.92 16 46 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 47 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.10 1.29 8.09 -2.39 -0.02 1.28 16 50 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.08 1.44 8.05 -2.39 -0.02 1.42 16 Total: -1.00 -72.26 389.30 -4.41 -76.66 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: -0.54 Total: 25.05 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 4.74 Total: -17.00 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -7.04 Total: -104.67 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -3.46 Total: -27.28 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -72.26 -4.41 -76.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574869406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.505 kcal (2) G-P(sol) polarization free energy of solvation -72.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds