Wall clock time and date at job start Fri Apr 10 2020 18:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46900 * 110.99919 * 2 1 4 4 C 1.50700 * 109.47601 * 66.04047 * 3 2 1 5 5 H 1.08003 * 119.99747 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00060 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00186 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99812 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46773 * 90.00097 * 8 6 4 10 10 H 1.48497 * 109.47212 * 209.99984 * 8 6 4 11 11 H 1.48498 * 109.47350 * 330.00536 * 8 6 4 12 12 C 1.46892 * 111.00415 * 236.04289 * 2 1 3 13 13 C 1.52999 * 109.47138 * 293.95385 * 12 2 1 14 14 H 1.09005 * 109.47098 * 59.99936 * 13 12 2 15 15 O 1.42903 * 109.47288 * 300.00104 * 13 12 2 16 16 C 1.52993 * 109.47457 * 179.97438 * 13 12 2 17 17 N 1.46906 * 109.47378 * 184.99997 * 16 13 12 18 18 C 1.46898 * 110.99888 * 180.02562 * 17 16 13 19 19 H 1.09001 * 109.55607 * 35.20283 * 18 17 16 20 20 C 1.53163 * 109.55544 * 275.00142 * 18 17 16 21 21 C 1.53038 * 109.41472 * 181.54126 * 20 18 17 22 22 O 1.43046 * 109.44891 * 59.31263 * 21 20 18 23 23 C 1.42576 * 113.84718 * 301.27916 * 22 21 20 24 24 C 1.53424 * 113.55893 * 286.13350 * 23 22 21 25 25 C 1.53840 * 86.97493 * 220.04196 * 24 23 22 26 26 C 1.53397 * 113.62643 * 188.21699 * 23 22 21 27 27 C 1.52807 * 112.94553 * 57.10524 * 23 22 21 28 28 H 1.09000 * 109.46669 * 183.95592 * 1 2 3 29 29 H 1.08999 * 109.47152 * 303.95761 * 1 2 3 30 30 H 1.08998 * 109.46311 * 63.95903 * 1 2 3 31 31 H 1.09000 * 109.47157 * 186.04509 * 3 2 1 32 32 H 1.09004 * 109.47130 * 306.04139 * 3 2 1 33 33 H 0.96993 * 119.99852 * 179.97438 * 7 6 4 34 34 H 1.08993 * 109.47591 * 173.95473 * 12 2 1 35 35 H 1.08999 * 109.47229 * 53.95487 * 12 2 1 36 36 H 0.96698 * 113.99918 * 300.00018 * 15 13 12 37 37 H 1.09004 * 109.46862 * 65.00100 * 16 13 12 38 38 H 1.09000 * 109.47250 * 305.00123 * 16 13 12 39 39 H 1.00901 * 111.00013 * 303.95621 * 17 16 13 40 40 H 1.08999 * 109.47483 * 301.52130 * 20 18 17 41 41 H 1.08997 * 109.47721 * 61.53951 * 20 18 17 42 42 H 1.08996 * 109.47844 * 179.31173 * 21 20 18 43 43 H 1.09011 * 109.47214 * 299.32550 * 21 20 18 44 44 H 1.09007 * 113.63380 * 334.56466 * 24 23 22 45 45 H 1.09000 * 113.63234 * 105.51923 * 24 23 22 46 46 H 1.08999 * 113.60845 * 270.59776 * 25 24 23 47 47 H 1.09012 * 113.67897 * 139.73614 * 25 24 23 48 48 H 1.08999 * 113.62768 * 254.40985 * 26 23 22 49 49 H 1.08998 * 113.63571 * 25.28299 * 26 23 22 50 50 H 1.08996 * 109.56847 * 186.22665 * 27 23 22 51 51 H 1.08997 * 109.56368 * 65.88294 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0473 1.2983 5 1 1.0745 1.5114 2.0487 6 6 2.0277 3.3493 1.5287 7 7 2.7129 4.0017 0.6152 8 14 1.5825 4.1872 3.1378 9 1 2.6585 3.9502 4.1335 10 1 1.4312 5.6469 2.9105 11 1 0.3041 3.6306 3.6487 12 6 1.9956 -0.7660 -1.1374 13 6 1.6317 -2.2426 -0.9701 14 1 0.5473 -2.3475 -0.9322 15 8 2.2010 -2.7391 0.2429 16 6 2.1795 -3.0404 -2.1551 17 7 1.7290 -4.4352 -2.0566 18 6 2.2376 -5.2332 -3.1802 19 1 3.2348 -4.8869 -3.4518 20 6 1.2987 -5.0845 -4.3811 21 6 1.8106 -5.9472 -5.5369 22 8 1.8647 -7.3152 -5.1225 23 6 2.7021 -7.5421 -3.9911 24 6 4.2005 -7.4655 -4.3120 25 6 4.3808 -8.6674 -3.3687 26 6 2.9162 -9.0273 -3.6726 27 6 2.2979 -6.7105 -2.7745 28 1 -0.3633 -1.0252 0.0709 29 1 -0.3633 0.5740 0.8524 30 1 -0.3632 0.4512 -0.9234 31 1 3.0798 1.3444 -0.1082 32 1 1.5612 1.9273 -0.8310 33 1 2.9874 4.9177 0.7771 34 1 3.0798 -0.6611 -1.1755 35 1 1.5613 -0.3873 -2.0627 36 1 3.1653 -2.6770 0.2790 37 1 3.2690 -3.0086 -2.1419 38 1 1.8146 -2.6056 -3.0857 39 1 1.9997 -4.8411 -1.1734 40 1 0.2965 -5.4093 -4.1013 41 1 1.2689 -4.0403 -4.6920 42 1 1.1364 -5.8517 -6.3880 43 1 2.8082 -5.6148 -5.8243 44 1 4.4364 -7.6876 -5.3528 45 1 4.6780 -6.5535 -3.9538 46 1 4.5545 -8.3851 -2.3304 47 1 5.0961 -9.4055 -3.7319 48 1 2.3609 -9.3715 -2.8001 49 1 2.7957 -9.6812 -4.5363 50 1 3.0344 -6.8415 -1.9818 51 1 1.3182 -7.0324 -2.4216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574869407.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:24 Heat of formation + Delta-G solvation = -75.621944 kcal Electronic energy + Delta-G solvation = -26670.380170 eV Core-core repulsion = 22991.047030 eV Total energy + Delta-G solvation = -3679.333140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.92268 -38.40468 -36.97532 -36.07918 -35.20698 -32.53425 -31.92833 -30.05638 -29.04125 -27.06492 -26.21293 -25.85921 -24.27152 -24.03505 -23.03715 -21.29536 -20.81241 -20.11324 -18.86200 -17.15831 -16.54095 -16.41848 -16.13429 -16.03182 -15.68693 -15.15500 -14.93575 -14.81534 -14.47754 -14.14758 -13.87761 -13.70968 -13.48377 -13.08486 -13.01541 -12.79773 -12.54754 -12.36856 -12.00820 -11.90795 -11.70578 -11.56193 -11.33737 -11.25183 -11.12414 -11.07343 -10.88483 -10.82242 -10.73026 -10.63617 -10.34985 -10.27656 -10.00056 -9.76616 -9.59150 -9.11843 -8.60773 -8.43258 -7.19341 -6.02639 -4.03521 3.32878 3.38454 3.42137 3.42818 3.73655 4.13709 4.15926 4.35895 4.38654 4.42557 4.57580 4.65628 4.74621 4.81015 4.88251 4.98399 5.07545 5.11931 5.22405 5.27836 5.30251 5.34083 5.35216 5.36936 5.46779 5.50922 5.53597 5.55725 5.58698 5.67105 5.73192 5.75542 5.87920 5.94104 6.04081 6.06800 6.21945 6.33365 6.41293 6.79502 6.84563 6.97033 7.24116 7.27308 7.33159 7.80534 7.95209 8.10324 8.21041 8.55890 9.04644 9.60665 11.08362 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.033101 B = 0.002102 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.692377 B =13318.379598 C =13523.654704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.103 0.897 15 O -0.546 6.546 16 C 0.028 3.972 17 N -0.679 5.679 18 C 0.088 3.912 19 H 0.044 0.956 20 C -0.144 4.144 21 C 0.062 3.938 22 O -0.367 6.367 23 C 0.095 3.905 24 C -0.164 4.164 25 C -0.140 4.140 26 C -0.121 4.121 27 C -0.126 4.126 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.008 0.992 31 H 0.027 0.973 32 H -0.011 1.011 33 H 0.261 0.739 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.367 0.633 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.349 0.651 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.048 0.952 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.090 0.910 50 H 0.075 0.925 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.980 -24.625 -12.114 27.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.198 1.198 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.121 0.879 15 O -0.349 6.349 16 C -0.102 4.102 17 N -0.311 5.311 18 C -0.022 4.022 19 H 0.062 0.938 20 C -0.183 4.183 21 C -0.015 4.015 22 O -0.286 6.286 23 C 0.055 3.945 24 C -0.201 4.201 25 C -0.177 4.177 26 C -0.159 4.159 27 C -0.164 4.164 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.026 0.974 31 H 0.045 0.955 32 H 0.007 0.993 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.213 0.787 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.169 0.831 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.109 0.891 50 H 0.094 0.906 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.880 -24.791 -11.949 27.534 hybrid contribution 1.252 1.452 0.113 1.920 sum 2.131 -23.339 -11.836 26.255 Atomic orbital electron populations 1.22252 0.88903 0.99690 1.00359 1.62021 1.06927 1.17349 1.39043 1.19744 0.95200 0.81679 0.96641 1.21172 1.34640 0.96850 1.01651 0.91776 1.25004 0.95358 0.97364 0.97044 1.69959 1.38568 1.11467 1.34058 0.86479 0.78909 0.78347 0.83565 1.20626 1.21365 1.19824 1.22697 1.00322 0.93920 0.93545 1.21975 0.99007 0.90897 0.82710 0.87897 1.86599 1.24827 1.84875 1.38647 1.22739 0.97458 0.89461 1.00504 1.60418 1.63537 1.01906 1.05249 1.21518 0.96198 0.92292 0.92193 0.93838 1.22195 1.00724 1.00575 0.94788 1.22566 1.00548 0.81751 0.96682 1.87942 1.68315 1.25950 1.46372 1.22654 0.89143 0.96113 0.86636 1.23541 0.96768 0.99137 1.00684 1.22727 0.96790 0.98278 0.99918 1.23003 0.96234 0.94476 1.02156 1.22022 1.03274 0.94220 0.96851 0.93354 0.90710 0.97350 0.95467 0.99319 0.92971 0.91409 0.95349 0.78724 0.95026 0.90427 0.83144 0.90207 0.90935 0.88779 0.93378 0.89385 0.91296 0.89825 0.90769 0.90611 0.89113 0.90611 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.14 60.07 0.55 1.29 16 2 N -0.53 -11.54 4.62 -244.37 -1.13 -12.67 16 3 C 0.19 5.07 4.72 -4.98 -0.02 5.04 16 4 C -0.50 -14.37 8.46 -34.44 -0.29 -14.66 16 5 H 0.06 1.82 7.12 -52.48 -0.37 1.45 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.03 0.43 4.62 -3.83 -0.02 0.41 16 13 C 0.11 1.62 3.07 -26.74 -0.08 1.54 16 14 H 0.10 1.59 6.55 -51.93 -0.34 1.25 16 15 O -0.55 -8.17 12.72 -35.23 -0.45 -8.62 16 16 C 0.03 0.32 5.16 -3.82 -0.02 0.30 16 17 N -0.68 -7.14 6.31 -106.46 -0.67 -7.82 16 18 C 0.09 0.80 2.49 -67.46 -0.17 0.64 16 19 H 0.04 0.41 7.28 -51.93 -0.38 0.03 16 20 C -0.14 -1.32 5.58 -26.63 -0.15 -1.47 16 21 C 0.06 0.52 6.74 37.18 0.25 0.77 16 22 O -0.37 -3.65 10.53 -35.23 -0.37 -4.02 16 23 C 0.09 0.79 1.16 -90.29 -0.10 0.68 16 24 C -0.16 -1.19 6.90 -26.07 -0.18 -1.37 16 25 C -0.14 -0.86 7.73 -25.85 -0.20 -1.06 16 26 C -0.12 -0.85 7.50 -26.08 -0.20 -1.05 16 27 C -0.13 -1.04 4.45 -26.66 -0.12 -1.16 16 28 H 0.05 0.86 6.47 -51.93 -0.34 0.52 16 29 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 32 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 35 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.37 4.48 9.05 45.56 0.41 4.89 16 37 H 0.03 0.34 8.06 -51.93 -0.42 -0.08 16 38 H 0.08 0.88 7.47 -51.93 -0.39 0.49 16 39 H 0.35 3.66 7.93 -39.29 -0.31 3.35 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.66 7.50 -51.93 -0.39 0.27 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.38 7.83 -51.92 -0.41 -0.03 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.51 7.56 -51.93 -0.39 0.11 16 46 H 0.08 0.48 7.61 -51.93 -0.40 0.08 16 47 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 48 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 49 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.08 0.56 7.31 -51.93 -0.38 0.18 16 51 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 391.53 15.07 5.90 5.90 Total: -1.00 -31.29 391.53 -10.48 -41.77 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -8.63 Total: 3.47 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -0.85 Total: -8.67 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -1.06 Total: -46.68 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.82 Total: -12.65 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.29 -10.48 -41.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574869407.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.849 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds