Wall clock time and date at job start Fri Apr 10 2020 18:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46900 * 110.99919 * 2 1 4 4 C 1.50700 * 109.47601 * 66.04047 * 3 2 1 5 5 H 1.08003 * 119.99747 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00060 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00186 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99812 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46773 * 90.00097 * 8 6 4 10 10 H 1.48497 * 109.47212 * 209.99984 * 8 6 4 11 11 H 1.48498 * 109.47350 * 330.00536 * 8 6 4 12 12 C 1.46892 * 111.00415 * 236.04289 * 2 1 3 13 13 C 1.52999 * 109.47138 * 293.95385 * 12 2 1 14 14 H 1.09005 * 109.47098 * 59.99936 * 13 12 2 15 15 O 1.42903 * 109.47288 * 300.00104 * 13 12 2 16 16 C 1.52993 * 109.47457 * 179.97438 * 13 12 2 17 17 N 1.46906 * 109.47378 * 184.99997 * 16 13 12 18 18 C 1.46898 * 110.99888 * 180.02562 * 17 16 13 19 19 H 1.09001 * 109.55607 * 35.20283 * 18 17 16 20 20 C 1.53163 * 109.55544 * 275.00142 * 18 17 16 21 21 C 1.53038 * 109.41472 * 181.54126 * 20 18 17 22 22 O 1.43046 * 109.44891 * 59.31263 * 21 20 18 23 23 C 1.42576 * 113.84718 * 301.27916 * 22 21 20 24 24 C 1.53424 * 113.55893 * 286.13350 * 23 22 21 25 25 C 1.53840 * 86.97493 * 220.04196 * 24 23 22 26 26 C 1.53397 * 113.62643 * 188.21699 * 23 22 21 27 27 C 1.52807 * 112.94553 * 57.10524 * 23 22 21 28 28 H 1.09000 * 109.46669 * 183.95592 * 1 2 3 29 29 H 1.08999 * 109.47152 * 303.95761 * 1 2 3 30 30 H 1.08998 * 109.46311 * 63.95903 * 1 2 3 31 31 H 1.09000 * 109.47157 * 186.04509 * 3 2 1 32 32 H 1.09004 * 109.47130 * 306.04139 * 3 2 1 33 33 H 0.96993 * 119.99852 * 179.97438 * 7 6 4 34 34 H 1.08993 * 109.47591 * 173.95473 * 12 2 1 35 35 H 1.08999 * 109.47229 * 53.95487 * 12 2 1 36 36 H 0.96698 * 113.99918 * 300.00018 * 15 13 12 37 37 H 1.09004 * 109.46862 * 65.00100 * 16 13 12 38 38 H 1.09000 * 109.47250 * 305.00123 * 16 13 12 39 39 H 1.00901 * 111.00013 * 303.95621 * 17 16 13 40 40 H 1.08999 * 109.47483 * 301.52130 * 20 18 17 41 41 H 1.08997 * 109.47721 * 61.53951 * 20 18 17 42 42 H 1.08996 * 109.47844 * 179.31173 * 21 20 18 43 43 H 1.09011 * 109.47214 * 299.32550 * 21 20 18 44 44 H 1.09007 * 113.63380 * 334.56466 * 24 23 22 45 45 H 1.09000 * 113.63234 * 105.51923 * 24 23 22 46 46 H 1.08999 * 113.60845 * 270.59776 * 25 24 23 47 47 H 1.09012 * 113.67897 * 139.73614 * 25 24 23 48 48 H 1.08999 * 113.62768 * 254.40985 * 26 23 22 49 49 H 1.08998 * 113.63571 * 25.28299 * 26 23 22 50 50 H 1.08996 * 109.56847 * 186.22665 * 27 23 22 51 51 H 1.08997 * 109.56368 * 65.88294 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0473 1.2983 5 1 1.0745 1.5114 2.0487 6 6 2.0277 3.3493 1.5287 7 7 2.7129 4.0017 0.6152 8 14 1.5825 4.1872 3.1378 9 1 2.6585 3.9502 4.1335 10 1 1.4312 5.6469 2.9105 11 1 0.3041 3.6306 3.6487 12 6 1.9956 -0.7660 -1.1374 13 6 1.6317 -2.2426 -0.9701 14 1 0.5473 -2.3475 -0.9322 15 8 2.2010 -2.7391 0.2429 16 6 2.1795 -3.0404 -2.1551 17 7 1.7290 -4.4352 -2.0566 18 6 2.2376 -5.2332 -3.1802 19 1 3.2348 -4.8869 -3.4518 20 6 1.2987 -5.0845 -4.3811 21 6 1.8106 -5.9472 -5.5369 22 8 1.8647 -7.3152 -5.1225 23 6 2.7021 -7.5421 -3.9911 24 6 4.2005 -7.4655 -4.3120 25 6 4.3808 -8.6674 -3.3687 26 6 2.9162 -9.0273 -3.6726 27 6 2.2979 -6.7105 -2.7745 28 1 -0.3633 -1.0252 0.0709 29 1 -0.3633 0.5740 0.8524 30 1 -0.3632 0.4512 -0.9234 31 1 3.0798 1.3444 -0.1082 32 1 1.5612 1.9273 -0.8310 33 1 2.9874 4.9177 0.7771 34 1 3.0798 -0.6611 -1.1755 35 1 1.5613 -0.3873 -2.0627 36 1 3.1653 -2.6770 0.2790 37 1 3.2690 -3.0086 -2.1419 38 1 1.8146 -2.6056 -3.0857 39 1 1.9997 -4.8411 -1.1734 40 1 0.2965 -5.4093 -4.1013 41 1 1.2689 -4.0403 -4.6920 42 1 1.1364 -5.8517 -6.3880 43 1 2.8082 -5.6148 -5.8243 44 1 4.4364 -7.6876 -5.3528 45 1 4.6780 -6.5535 -3.9538 46 1 4.5545 -8.3851 -2.3304 47 1 5.0961 -9.4055 -3.7319 48 1 2.3609 -9.3715 -2.8001 49 1 2.7957 -9.6812 -4.5363 50 1 3.0344 -6.8415 -1.9818 51 1 1.3182 -7.0324 -2.4216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574869407.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:23 Heat of formation + Delta-G solvation = -99.565405 kcal Electronic energy + Delta-G solvation = -26671.418437 eV Core-core repulsion = 22991.047030 eV Total energy + Delta-G solvation = -3680.371406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55672 -39.62814 -37.87784 -37.18019 -36.34364 -34.62577 -32.85011 -30.93718 -30.21063 -28.92557 -27.31437 -26.75900 -25.41038 -24.89073 -24.03678 -22.65336 -21.88532 -21.36489 -19.48958 -18.57774 -17.88127 -17.23334 -17.22186 -17.03525 -16.73934 -16.45617 -16.15452 -15.84464 -15.65444 -15.39912 -15.07165 -15.00843 -14.49109 -14.19570 -13.84485 -13.79544 -13.67565 -13.50435 -13.28535 -13.18217 -12.82656 -12.65445 -12.55148 -12.52367 -12.39826 -12.37039 -12.18577 -12.01778 -11.86981 -11.66172 -11.63330 -11.46334 -11.38876 -11.01745 -10.68665 -10.62589 -10.37512 -9.43299 -8.97851 -8.21724 -6.31508 1.40665 1.42092 1.53400 2.39475 2.78545 2.86016 3.10637 3.35032 3.51092 3.58949 3.67935 3.78503 3.81828 3.88971 4.01961 4.07328 4.13861 4.18200 4.26350 4.27021 4.41585 4.46429 4.51263 4.58850 4.67127 4.69404 4.72064 4.77634 4.78993 4.82351 4.86502 4.93307 4.97437 5.04515 5.05567 5.10312 5.13246 5.16378 5.23663 5.30002 5.33797 5.43327 5.63926 6.00321 6.05322 6.30824 6.32509 6.42603 6.62209 6.84486 6.94623 7.38169 8.89250 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.033101 B = 0.002102 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.692377 B =13318.379598 C =13523.654704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.539 5.539 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.265 1.265 12 C 0.024 3.976 13 C 0.130 3.870 14 H 0.094 0.906 15 O -0.559 6.559 16 C 0.041 3.959 17 N -0.683 5.683 18 C 0.090 3.910 19 H 0.046 0.954 20 C -0.142 4.142 21 C 0.062 3.938 22 O -0.385 6.385 23 C 0.085 3.915 24 C -0.162 4.162 25 C -0.132 4.132 26 C -0.123 4.123 27 C -0.120 4.120 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.010 0.990 31 H 0.005 0.995 32 H -0.040 1.040 33 H 0.265 0.735 34 H 0.068 0.932 35 H 0.031 0.969 36 H 0.379 0.621 37 H 0.042 0.958 38 H 0.080 0.920 39 H 0.350 0.650 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.054 0.946 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 -25.764 -11.661 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.263 5.263 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.105 4.105 13 C 0.070 3.930 14 H 0.111 0.889 15 O -0.365 6.365 16 C -0.090 4.090 17 N -0.316 5.316 18 C -0.019 4.019 19 H 0.064 0.936 20 C -0.180 4.180 21 C -0.015 4.015 22 O -0.305 6.305 23 C 0.045 3.955 24 C -0.200 4.200 25 C -0.170 4.170 26 C -0.160 4.160 27 C -0.158 4.158 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.029 0.971 31 H 0.023 0.977 32 H -0.022 1.022 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.227 0.773 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.170 0.830 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.107 0.893 50 H 0.105 0.895 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.091 -25.959 -11.504 28.414 hybrid contribution 1.187 1.758 -0.080 2.123 sum 2.278 -24.200 -11.584 26.927 Atomic orbital electron populations 1.22216 0.87905 1.01036 0.99579 1.61935 1.07922 1.14846 1.41562 1.19398 0.93640 0.83935 0.94908 1.21464 1.34792 0.97494 1.02355 0.92099 1.25924 0.95052 0.98049 1.00750 1.70078 1.39407 1.11925 1.36110 0.85374 0.78966 0.77229 0.78995 1.19780 1.20693 1.18977 1.22817 1.00225 0.95390 0.92053 1.21753 0.98547 0.88964 0.83781 0.88859 1.86564 1.26108 1.84716 1.39085 1.22531 0.97880 0.89588 0.98963 1.60387 1.63845 1.01571 1.05781 1.21518 0.96142 0.92626 0.91637 0.93587 1.22160 1.00016 1.00689 0.95148 1.22627 1.01138 0.81130 0.96633 1.87922 1.68859 1.26655 1.47020 1.22842 0.89545 0.96917 0.86197 1.23522 0.95884 0.99668 1.00916 1.22725 0.96327 0.97851 1.00059 1.23037 0.96997 0.93688 1.02291 1.21963 1.03062 0.93516 0.97214 0.90645 0.92673 0.97121 0.97739 1.02208 0.92670 0.91345 0.95049 0.77299 0.93978 0.90190 0.83004 0.91555 0.90895 0.87833 0.92728 0.89554 0.91302 0.89140 0.89809 0.90182 0.89282 0.89512 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 9.14 127.69 1.17 2.81 16 2 N -0.54 -23.54 4.62 -927.06 -4.28 -27.82 16 3 C 0.21 11.20 4.72 85.56 0.40 11.60 16 4 C -0.52 -30.15 8.46 25.60 0.22 -29.93 16 5 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 6 C 0.00 0.01 5.46 84.65 0.46 0.47 16 7 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 8 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 C 0.02 0.83 4.62 86.30 0.40 1.23 16 13 C 0.13 3.50 3.07 30.59 0.09 3.59 16 14 H 0.09 2.74 6.55 -2.38 -0.02 2.72 16 15 O -0.56 -15.86 12.72 -148.98 -1.90 -17.76 16 16 C 0.04 0.84 5.16 86.30 0.45 1.29 16 17 N -0.68 -13.26 6.31 -490.73 -3.10 -16.36 16 18 C 0.09 1.52 2.49 45.08 0.11 1.63 16 19 H 0.05 0.77 7.28 -2.39 -0.02 0.76 16 20 C -0.14 -2.44 5.58 30.66 0.17 -2.27 16 21 C 0.06 0.97 6.74 71.99 0.49 1.45 16 22 O -0.39 -7.31 10.53 -148.98 -1.57 -8.88 16 23 C 0.08 1.30 1.16 -10.58 -0.01 1.29 16 24 C -0.16 -2.10 6.90 31.02 0.21 -1.88 16 25 C -0.13 -1.37 7.73 31.16 0.24 -1.13 16 26 C -0.12 -1.56 7.50 31.01 0.23 -1.33 16 27 C -0.12 -1.81 4.45 30.64 0.14 -1.68 16 28 H 0.08 2.59 6.47 -2.39 -0.02 2.58 16 29 H 0.05 2.40 6.76 -2.39 -0.02 2.38 16 30 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.00 0.26 7.93 -2.39 -0.02 0.24 16 32 H -0.04 -2.33 8.12 -2.39 -0.02 -2.34 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.07 2.30 7.93 -2.39 -0.02 2.28 16 35 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 36 H 0.38 8.63 9.05 -74.06 -0.67 7.96 16 37 H 0.04 0.81 8.06 -2.38 -0.02 0.79 16 38 H 0.08 1.66 7.47 -2.39 -0.02 1.64 16 39 H 0.35 6.71 7.93 -89.69 -0.71 6.00 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.23 7.50 -2.39 -0.02 1.22 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.05 0.78 7.83 -2.38 -0.02 0.76 16 44 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 45 H 0.07 0.88 7.56 -2.39 -0.02 0.87 16 46 H 0.09 0.83 7.61 -2.39 -0.02 0.81 16 47 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 48 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 49 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.09 1.11 7.31 -2.39 -0.02 1.10 16 51 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -66.73 391.53 -4.24 -70.97 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -0.48 Total: 22.19 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 4.77 Total: -12.86 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -7.10 Total: -100.46 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -3.46 Total: -26.64 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -66.73 -4.24 -70.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574869407.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.597 kcal (2) G-P(sol) polarization free energy of solvation -66.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds