Wall clock time and date at job start Fri Apr 10 2020 18:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 117.00084 * 2 1 4 4 O 1.20831 * 119.99588 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00048 * 179.97438 * 3 2 1 6 6 C 1.53005 * 109.47159 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.47241 * 180.02562 * 6 5 3 8 8 C 1.34778 * 119.99797 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99972 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.99898 * 180.27352 * 8 7 6 11 11 N 1.46894 * 109.47436 * 173.45699 * 10 8 7 12 12 C 1.46847 * 111.00301 * 169.40141 * 11 10 8 13 13 C 1.53039 * 109.52415 * 185.84283 * 12 11 10 14 14 C 1.53126 * 109.27449 * 300.81595 * 13 12 11 15 15 C 1.53001 * 109.57069 * 177.58955 * 14 13 12 16 16 C 1.50700 * 109.47140 * 65.29233 * 15 14 13 17 17 H 1.08000 * 119.99954 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00236 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00249 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99942 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47483 * 89.99924 * 20 18 16 22 22 H 1.48501 * 109.47140 * 210.00230 * 20 18 16 23 23 H 1.48505 * 109.47090 * 329.99821 * 20 18 16 24 24 C 1.53124 * 109.15864 * 57.65819 * 14 13 12 25 25 C 1.46847 * 111.00173 * 293.61382 * 11 10 8 26 26 H 1.08997 * 109.46966 * 60.00212 * 1 2 3 27 27 H 1.08999 * 109.46872 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47164 * 300.00196 * 1 2 3 29 29 H 1.09000 * 109.47206 * 60.00114 * 5 3 2 30 30 H 1.09004 * 109.47040 * 299.99757 * 5 3 2 31 31 H 1.09000 * 109.47130 * 59.99869 * 6 5 3 32 32 H 1.09005 * 109.46780 * 300.00273 * 6 5 3 33 33 H 0.97001 * 120.00008 * 359.97438 * 7 6 5 34 34 H 1.09006 * 109.47110 * 293.46059 * 10 8 7 35 35 H 1.08999 * 109.47358 * 53.45628 * 10 8 7 36 36 H 1.08996 * 109.45875 * 305.85218 * 12 11 10 37 37 H 1.08992 * 109.46460 * 65.82544 * 12 11 10 38 38 H 1.08994 * 109.50626 * 180.88030 * 13 12 11 39 39 H 1.08996 * 109.50629 * 60.75326 * 13 12 11 40 40 H 1.08995 * 109.52557 * 297.75041 * 14 13 12 41 41 H 1.09003 * 109.46468 * 185.28348 * 15 14 13 42 42 H 1.08998 * 109.47580 * 305.28684 * 15 14 13 43 43 H 0.97000 * 120.00249 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.50017 * 182.40007 * 24 14 13 45 45 H 1.09002 * 109.50229 * 62.28469 * 24 14 13 46 46 H 1.09012 * 109.46038 * 294.17527 * 25 11 10 47 47 H 1.09002 * 109.46256 * 54.14936 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7421 0.0011 7 7 5.4631 2.8188 0.0011 8 6 6.0749 4.0197 0.0009 9 8 5.4143 5.0369 0.0004 10 6 7.5798 4.0986 -0.0053 11 7 7.9962 5.4986 -0.1620 12 6 9.4372 5.6491 0.0773 13 6 9.8080 7.1336 0.0495 14 6 9.4337 7.7226 -1.3135 15 6 9.7463 9.2203 -1.3279 16 6 11.2347 9.4240 -1.2089 17 1 11.8920 8.5707 -1.1304 18 6 11.7574 10.6998 -1.2003 19 7 13.0563 10.8776 -1.0959 20 14 10.6206 12.1758 -1.3368 21 1 10.2020 12.6056 0.0217 22 1 11.3349 13.2900 -2.0103 23 1 9.4213 11.8053 -2.1302 24 6 7.9374 7.5098 -1.5593 25 6 7.6208 6.0144 -1.4847 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.9564 0.7806 -0.8891 30 1 3.9557 0.7810 0.8909 31 1 3.6101 3.2360 0.8910 32 1 3.6107 3.2364 -0.8889 33 1 5.9914 2.0053 0.0011 34 1 7.9681 3.7071 0.9350 35 1 7.9712 3.5083 -0.8339 36 1 9.6892 5.2301 1.0514 37 1 9.9913 5.1218 -0.6991 38 1 10.8801 7.2441 0.2116 39 1 9.2645 7.6593 0.8346 40 1 10.0059 7.2236 -2.0956 41 1 9.3936 9.6560 -2.2628 42 1 9.2451 9.7042 -0.4896 43 1 13.4240 11.7752 -1.0894 44 1 7.6732 7.8889 -2.5464 45 1 7.3646 8.0414 -0.7993 46 1 8.1835 5.4852 -2.2539 47 1 6.5537 5.8608 -1.6450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580441165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:27 Heat of formation + Delta-G solvation = -129.554889 kcal Electronic energy + Delta-G solvation = -25511.137715 eV Core-core repulsion = 21693.632773 eV Total energy + Delta-G solvation = -3817.504942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03170 -40.03560 -38.32000 -37.15781 -35.51494 -34.43543 -32.31267 -31.81024 -30.34804 -29.31365 -28.23728 -26.57337 -24.39943 -23.12467 -22.54090 -21.37497 -20.74915 -20.32237 -18.94838 -18.20240 -17.36522 -17.28085 -16.74297 -16.64502 -16.20789 -15.91305 -15.07334 -15.02430 -14.34279 -14.25583 -14.12364 -13.88999 -13.56683 -13.46655 -13.07147 -12.84057 -12.79926 -12.72803 -12.34771 -12.29210 -12.00750 -11.73228 -11.57450 -11.34576 -11.28717 -11.08047 -10.92949 -10.64244 -10.51837 -10.14219 -9.88340 -9.68910 -9.52032 -9.38613 -9.14366 -8.90936 -8.45791 -8.11350 -5.97177 -3.93643 1.64853 1.99948 2.54562 2.94303 3.37721 3.44645 3.50115 3.97147 4.10389 4.37611 4.37930 4.53030 4.59112 4.65264 4.67895 4.76197 5.02485 5.07097 5.14247 5.31745 5.35372 5.36850 5.46776 5.51969 5.58945 5.72906 5.81934 5.89369 5.95792 6.07653 6.11482 6.32314 6.40185 6.55568 6.65968 6.93364 7.01153 7.09421 7.10560 7.17528 7.32622 7.34515 7.42254 7.58765 7.89099 8.11210 8.62270 9.07856 9.66720 11.16188 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.038579 B = 0.001947 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.612254 B =14380.824817 C =14897.758617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.465 3.535 4 O -0.499 6.499 5 C -0.126 4.126 6 C 0.131 3.869 7 N -0.741 5.741 8 C 0.513 3.487 9 O -0.508 6.508 10 C 0.038 3.962 11 N -0.520 5.520 12 C 0.058 3.942 13 C -0.101 4.101 14 C -0.073 4.073 15 C -0.009 4.009 16 C -0.513 4.513 17 H 0.072 0.928 18 C 0.065 3.935 19 N -0.907 5.907 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.266 1.266 24 C -0.112 4.112 25 C 0.058 3.942 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.399 0.601 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.030 0.970 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.014 0.986 42 H 0.012 0.988 43 H 0.261 0.739 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.024 0.976 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.206 -27.130 2.447 33.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.306 3.694 4 O -0.386 6.386 5 C -0.164 4.164 6 C 0.007 3.993 7 N -0.396 5.396 8 C 0.299 3.701 9 O -0.380 6.380 10 C -0.094 4.094 11 N -0.245 5.245 12 C -0.069 4.069 13 C -0.138 4.138 14 C -0.092 4.092 15 C -0.047 4.047 16 C -0.551 4.551 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.546 5.546 20 Si 0.706 3.294 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.190 1.190 24 C -0.150 4.150 25 C -0.070 4.070 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.233 0.767 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.040 -25.627 2.799 33.275 hybrid contribution -0.030 -0.104 -0.639 0.648 sum -21.069 -25.731 2.161 33.326 Atomic orbital electron populations 1.23311 0.75799 1.03897 1.02845 1.86487 1.23862 1.33242 1.84148 1.23416 0.91737 0.81534 0.72677 1.90749 1.67149 1.36207 1.44468 1.21499 0.88571 0.99530 1.06761 1.21000 0.80439 0.93443 1.04373 1.45940 1.06708 1.08928 1.78052 1.20738 0.90644 0.82844 0.75918 1.90748 1.66539 1.34276 1.46464 1.21929 0.91767 0.92571 1.03110 1.61643 1.16640 1.14841 1.31421 1.22234 0.85543 0.99303 0.99854 1.21555 1.01988 0.91974 0.98316 1.21069 0.93127 0.98683 0.96335 1.19613 0.97414 0.91423 0.96227 1.21165 0.90636 0.93625 1.49642 0.90981 1.25023 0.94827 0.98968 0.94760 1.69918 1.11189 1.22022 1.51500 0.86803 0.81436 0.82568 0.78636 1.20360 1.21587 1.19024 1.21683 0.98042 0.93944 1.01306 1.22197 1.00561 0.96787 0.87431 0.91686 0.87897 0.91675 0.86796 0.86768 0.90358 0.90432 0.76663 0.87850 0.92339 0.91326 0.95143 0.90231 0.91765 0.92483 0.96765 0.96934 0.92910 0.92223 0.91425 0.95745 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.16 10.56 101.05 1.07 1.22 16 2 O -0.36 -2.33 10.57 -39.27 -0.41 -2.74 16 3 C 0.46 3.43 7.96 36.00 0.29 3.72 16 4 O -0.50 -5.51 15.73 -18.75 -0.30 -5.80 16 5 C -0.13 -0.53 5.93 -27.88 -0.17 -0.70 16 6 C 0.13 1.02 4.96 -4.04 -0.02 1.00 16 7 N -0.74 -5.35 5.56 -60.29 -0.33 -5.69 16 8 C 0.51 5.93 7.36 -10.99 -0.08 5.85 16 9 O -0.51 -8.39 14.71 5.55 0.08 -8.31 16 10 C 0.04 0.40 5.45 -4.98 -0.03 0.37 16 11 N -0.52 -7.70 4.35 -236.12 -1.03 -8.72 16 12 C 0.06 0.86 5.46 -3.83 -0.02 0.84 16 13 C -0.10 -1.89 5.15 -26.65 -0.14 -2.03 16 14 C -0.07 -1.50 2.20 -90.49 -0.20 -1.69 16 15 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 16 C -0.51 -14.64 9.00 -34.44 -0.31 -14.95 16 17 H 0.07 2.18 7.32 -52.49 -0.38 1.80 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.91 -28.24 13.96 55.43 0.77 -27.47 16 20 Si 0.88 22.38 27.47 -169.99 -4.67 17.71 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 24 C -0.11 -2.02 5.38 -26.65 -0.14 -2.16 16 25 C 0.06 0.90 5.12 -3.84 -0.02 0.89 16 26 H 0.06 0.30 8.13 -51.93 -0.42 -0.12 16 27 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.30 8.13 -51.93 -0.42 -0.12 16 29 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.40 1.38 8.47 -40.82 -0.35 1.03 16 34 H 0.10 0.86 7.98 -51.93 -0.41 0.45 16 35 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 36 H 0.07 0.89 8.01 -51.93 -0.42 0.47 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 1.62 7.05 -51.93 -0.37 1.25 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 42 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 46 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 47 H 0.08 1.25 6.06 -51.93 -0.31 0.94 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -36.84 378.43 -8.24 -45.07 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -8.09 Total: -3.59 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 0.03 Total: -6.17 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.59 Total: -41.88 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.63 Total: -16.85 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.84 -8.24 -45.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580441165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.482 kcal (2) G-P(sol) polarization free energy of solvation -36.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds