Wall clock time and date at job start Fri Apr 10 2020 18:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 117.00084 * 2 1 4 4 O 1.20831 * 119.99588 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00048 * 179.97438 * 3 2 1 6 6 C 1.53005 * 109.47159 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.47241 * 180.02562 * 6 5 3 8 8 C 1.34778 * 119.99797 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99972 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.99898 * 180.27352 * 8 7 6 11 11 N 1.46894 * 109.47436 * 173.45699 * 10 8 7 12 12 C 1.46847 * 111.00301 * 169.40141 * 11 10 8 13 13 C 1.53039 * 109.52415 * 185.84283 * 12 11 10 14 14 C 1.53126 * 109.27449 * 300.81595 * 13 12 11 15 15 C 1.53001 * 109.57069 * 177.58955 * 14 13 12 16 16 C 1.50700 * 109.47140 * 65.29233 * 15 14 13 17 17 H 1.08000 * 119.99954 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00236 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00249 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99942 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47483 * 89.99924 * 20 18 16 22 22 H 1.48501 * 109.47140 * 210.00230 * 20 18 16 23 23 H 1.48505 * 109.47090 * 329.99821 * 20 18 16 24 24 C 1.53124 * 109.15864 * 57.65819 * 14 13 12 25 25 C 1.46847 * 111.00173 * 293.61382 * 11 10 8 26 26 H 1.08997 * 109.46966 * 60.00212 * 1 2 3 27 27 H 1.08999 * 109.46872 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47164 * 300.00196 * 1 2 3 29 29 H 1.09000 * 109.47206 * 60.00114 * 5 3 2 30 30 H 1.09004 * 109.47040 * 299.99757 * 5 3 2 31 31 H 1.09000 * 109.47130 * 59.99869 * 6 5 3 32 32 H 1.09005 * 109.46780 * 300.00273 * 6 5 3 33 33 H 0.97001 * 120.00008 * 359.97438 * 7 6 5 34 34 H 1.09006 * 109.47110 * 293.46059 * 10 8 7 35 35 H 1.08999 * 109.47358 * 53.45628 * 10 8 7 36 36 H 1.08996 * 109.45875 * 305.85218 * 12 11 10 37 37 H 1.08992 * 109.46460 * 65.82544 * 12 11 10 38 38 H 1.08994 * 109.50626 * 180.88030 * 13 12 11 39 39 H 1.08996 * 109.50629 * 60.75326 * 13 12 11 40 40 H 1.08995 * 109.52557 * 297.75041 * 14 13 12 41 41 H 1.09003 * 109.46468 * 185.28348 * 15 14 13 42 42 H 1.08998 * 109.47580 * 305.28684 * 15 14 13 43 43 H 0.97000 * 120.00249 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.50017 * 182.40007 * 24 14 13 45 45 H 1.09002 * 109.50229 * 62.28469 * 24 14 13 46 46 H 1.09012 * 109.46038 * 294.17527 * 25 11 10 47 47 H 1.09002 * 109.46256 * 54.14936 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7421 0.0011 7 7 5.4631 2.8188 0.0011 8 6 6.0749 4.0197 0.0009 9 8 5.4143 5.0369 0.0004 10 6 7.5798 4.0986 -0.0053 11 7 7.9962 5.4986 -0.1620 12 6 9.4372 5.6491 0.0773 13 6 9.8080 7.1336 0.0495 14 6 9.4337 7.7226 -1.3135 15 6 9.7463 9.2203 -1.3279 16 6 11.2347 9.4240 -1.2089 17 1 11.8920 8.5707 -1.1304 18 6 11.7574 10.6998 -1.2003 19 7 13.0563 10.8776 -1.0959 20 14 10.6206 12.1758 -1.3368 21 1 10.2020 12.6056 0.0217 22 1 11.3349 13.2900 -2.0103 23 1 9.4213 11.8053 -2.1302 24 6 7.9374 7.5098 -1.5593 25 6 7.6208 6.0144 -1.4847 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.9564 0.7806 -0.8891 30 1 3.9557 0.7810 0.8909 31 1 3.6101 3.2360 0.8910 32 1 3.6107 3.2364 -0.8889 33 1 5.9914 2.0053 0.0011 34 1 7.9681 3.7071 0.9350 35 1 7.9712 3.5083 -0.8339 36 1 9.6892 5.2301 1.0514 37 1 9.9913 5.1218 -0.6991 38 1 10.8801 7.2441 0.2116 39 1 9.2645 7.6593 0.8346 40 1 10.0059 7.2236 -2.0956 41 1 9.3936 9.6560 -2.2628 42 1 9.2451 9.7042 -0.4896 43 1 13.4240 11.7752 -1.0894 44 1 7.6732 7.8889 -2.5464 45 1 7.3646 8.0414 -0.7993 46 1 8.1835 5.4852 -2.2539 47 1 6.5537 5.8608 -1.6450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580441165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:27 Heat of formation + Delta-G solvation = -157.007583 kcal Electronic energy + Delta-G solvation = -25512.328154 eV Core-core repulsion = 21693.632773 eV Total energy + Delta-G solvation = -3818.695380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60564 -40.97434 -39.54157 -37.74068 -36.37341 -35.92956 -34.27391 -32.54126 -31.69059 -30.78944 -28.86446 -27.76027 -25.47277 -24.38215 -23.92636 -22.16274 -21.94087 -21.32608 -20.47439 -18.85914 -18.76552 -18.11374 -17.80116 -17.33629 -17.15920 -16.70161 -16.35524 -16.07082 -15.80933 -15.29778 -15.21255 -15.04082 -14.76472 -14.40996 -14.37359 -14.13975 -13.99886 -13.81261 -13.33343 -13.25611 -13.00095 -12.79409 -12.76590 -12.63911 -12.49460 -12.36764 -12.04326 -11.86758 -11.83759 -11.69430 -11.65266 -11.32336 -11.02200 -10.89218 -10.72451 -10.61590 -10.11543 -9.17813 -8.26158 -6.27340 1.11170 1.35175 1.36067 1.48363 1.50912 1.69682 2.27767 2.37477 3.06062 3.09734 3.49549 3.87838 3.96520 3.99482 4.01625 4.05249 4.11035 4.29427 4.31498 4.35428 4.42075 4.44720 4.45807 4.62899 4.67305 4.72037 4.75370 4.77130 4.81773 4.90436 4.99004 5.03394 5.12901 5.22669 5.33514 5.35658 5.41987 5.43326 5.52361 5.72197 5.74926 6.11560 6.17500 6.34629 6.63558 6.65530 6.79020 7.35571 7.36366 8.90092 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.038579 B = 0.001947 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.612254 B =14380.824817 C =14897.758617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.463 3.537 4 O -0.546 6.546 5 C -0.111 4.111 6 C 0.134 3.866 7 N -0.715 5.715 8 C 0.510 3.490 9 O -0.567 6.567 10 C 0.039 3.961 11 N -0.542 5.542 12 C 0.070 3.930 13 C -0.099 4.099 14 C -0.070 4.070 15 C -0.007 4.007 16 C -0.516 4.516 17 H 0.041 0.959 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.942 3.058 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.253 1.253 24 C -0.107 4.107 25 C 0.067 3.933 26 H 0.059 0.941 27 H 0.133 0.867 28 H 0.059 0.941 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.423 0.577 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.012 0.988 42 H 0.009 0.991 43 H 0.264 0.736 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.038 0.962 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.156 -29.876 2.443 36.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.436 6.436 5 C -0.148 4.148 6 C 0.009 3.991 7 N -0.371 5.371 8 C 0.297 3.703 9 O -0.444 6.444 10 C -0.091 4.091 11 N -0.268 5.268 12 C -0.057 4.057 13 C -0.137 4.137 14 C -0.088 4.088 15 C -0.045 4.045 16 C -0.554 4.554 17 H 0.059 0.941 18 C -0.191 4.191 19 N -0.592 5.592 20 Si 0.767 3.233 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.177 1.177 24 C -0.145 4.145 25 C -0.060 4.060 26 H 0.078 0.922 27 H 0.151 0.849 28 H 0.078 0.922 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.261 0.739 34 H 0.151 0.849 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.031 0.969 42 H 0.027 0.973 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.985 -28.471 2.796 36.080 hybrid contribution 0.269 0.647 -0.617 0.934 sum -21.716 -27.824 2.179 35.363 Atomic orbital electron populations 1.23536 0.74919 1.05728 1.02372 1.86487 1.24829 1.32608 1.83678 1.24038 0.92908 0.81083 0.71227 1.90741 1.68360 1.37687 1.46798 1.21489 0.86353 0.97214 1.09768 1.20851 0.80446 0.95689 1.02072 1.45657 1.06636 1.08802 1.76011 1.21037 0.91144 0.83047 0.75078 1.90737 1.67695 1.36486 1.49508 1.22059 0.90876 0.90369 1.05838 1.61492 1.16286 1.18133 1.30851 1.22063 0.85976 0.96016 1.01695 1.21445 1.00165 0.95275 0.96786 1.20975 0.94851 0.95777 0.97218 1.19579 0.94504 0.94646 0.95729 1.21443 0.92457 0.92747 1.48723 0.94107 1.25904 0.96316 1.02226 0.94646 1.70052 1.13133 1.22909 1.53065 0.85774 0.79685 0.78792 0.79095 1.19594 1.20879 1.17690 1.21589 0.95681 0.96180 1.01010 1.22016 1.00468 0.94899 0.88641 0.92230 0.84911 0.92193 0.83630 0.83552 0.92847 0.92900 0.73903 0.84948 0.89192 0.88844 0.94040 0.92726 0.93155 0.93007 0.96944 0.97268 0.92691 0.91761 0.92973 0.94402 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 113.37 1.20 1.41 16 2 O -0.36 -3.99 10.57 -51.45 -0.54 -4.54 16 3 C 0.46 6.27 7.96 71.24 0.57 6.84 16 4 O -0.55 -12.28 15.73 21.95 0.35 -11.94 16 5 C -0.11 -0.62 5.93 29.85 0.18 -0.44 16 6 C 0.13 1.91 4.96 86.38 0.43 2.34 16 7 N -0.72 -8.25 5.56 -463.05 -2.57 -10.82 16 8 C 0.51 10.68 7.36 87.66 0.65 11.32 16 9 O -0.57 -18.57 14.71 -3.04 -0.04 -18.61 16 10 C 0.04 0.67 5.45 85.56 0.47 1.14 16 11 N -0.54 -14.78 4.35 -900.95 -3.92 -18.70 16 12 C 0.07 1.91 5.46 86.33 0.47 2.38 16 13 C -0.10 -3.72 5.15 30.65 0.16 -3.56 16 14 C -0.07 -2.84 2.20 -10.71 -0.02 -2.86 16 15 C -0.01 -0.36 3.52 29.85 0.11 -0.25 16 16 C -0.52 -30.21 9.00 25.60 0.23 -29.97 16 17 H 0.04 2.58 7.32 -2.91 -0.02 2.56 16 18 C 0.01 0.33 5.47 84.65 0.46 0.79 16 19 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 20 Si 0.94 46.38 27.47 68.60 1.88 48.27 16 21 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.25 -11.84 6.54 99.48 0.65 -11.19 16 24 C -0.11 -3.80 5.38 30.65 0.16 -3.63 16 25 C 0.07 2.00 5.12 86.32 0.44 2.45 16 26 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 27 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 29 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.15 -0.04 8.14 -2.38 -0.02 -0.06 16 31 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 32 H 0.05 1.04 8.10 -2.38 -0.02 1.02 16 33 H 0.42 0.96 8.47 -92.71 -0.79 0.17 16 34 H 0.13 1.55 7.98 -2.38 -0.02 1.53 16 35 H 0.09 1.06 8.12 -2.39 -0.02 1.05 16 36 H 0.09 2.12 8.01 -2.39 -0.02 2.10 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 2.29 7.05 -2.39 -0.02 2.27 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 42 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 43 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 44 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.07 2.30 6.06 -2.39 -0.01 2.28 16 Total: -1.00 -84.50 378.43 1.05 -83.45 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 0.11 Total: 5.14 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 5.49 Total: -12.05 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -6.19 Total: -89.73 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.24 Total: -35.09 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.88 Total: 48.27 kcal Total: -84.50 1.05 -83.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580441165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.557 kcal (2) G-P(sol) polarization free energy of solvation -84.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds