Wall clock time and date at job start Fri Apr 10 2020 18:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34224 * 117.00156 * 2 1 4 4 O 1.20829 * 120.00217 * 359.71851 * 3 2 1 5 5 C 1.50701 * 120.00124 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47194 * 299.72406 * 5 3 2 7 7 C 1.52998 * 109.47586 * 179.72154 * 5 3 2 8 8 N 1.46496 * 109.46847 * 65.39527 * 7 5 3 9 9 C 1.34777 * 120.00088 * 185.17449 * 8 7 5 10 10 O 1.21283 * 119.99804 * 354.79519 * 9 8 7 11 11 C 1.50699 * 120.00510 * 174.79607 * 9 8 7 12 12 H 1.09001 * 109.46669 * 325.48016 * 11 9 8 13 13 N 1.46892 * 109.47381 * 205.48079 * 11 9 8 14 14 C 1.53002 * 109.47210 * 85.47526 * 11 9 8 15 15 C 1.52993 * 109.47383 * 183.26445 * 14 11 9 16 16 C 1.50706 * 109.47249 * 180.02562 * 15 14 11 17 17 H 1.08001 * 119.99571 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99781 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00242 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99618 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47390 * 59.99927 * 20 18 16 22 22 H 1.48501 * 109.47296 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47055 * 299.99582 * 20 18 16 24 24 C 1.53006 * 109.47066 * 59.71773 * 5 3 2 25 25 C 1.53000 * 109.47102 * 185.18544 * 24 5 3 26 26 C 1.53008 * 117.49605 * 243.24939 * 25 24 5 27 27 C 1.53003 * 59.99923 * 252.50896 * 26 25 24 28 28 H 1.09006 * 109.47125 * 300.00703 * 1 2 3 29 29 H 1.09003 * 109.47227 * 60.00258 * 1 2 3 30 30 H 1.08997 * 109.47855 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47388 * 185.39355 * 7 5 3 32 32 H 1.08994 * 109.46989 * 305.39644 * 7 5 3 33 33 H 0.97005 * 120.00256 * 5.17160 * 8 7 5 34 34 H 1.00908 * 111.00026 * 299.99866 * 13 11 9 35 35 H 1.00900 * 111.00293 * 63.95644 * 13 11 9 36 36 H 1.09003 * 109.47275 * 303.27059 * 14 11 9 37 37 H 1.09006 * 109.46620 * 63.26814 * 14 11 9 38 38 H 1.09003 * 109.47416 * 300.00527 * 15 14 11 39 39 H 1.08998 * 109.46961 * 60.00249 * 15 14 11 40 40 H 0.96999 * 119.99683 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.47405 * 305.19227 * 24 5 3 42 42 H 1.09004 * 109.46582 * 65.18793 * 24 5 3 43 43 H 1.09002 * 115.55099 * 28.95909 * 25 24 5 44 44 H 1.08995 * 117.50375 * 359.97438 * 26 25 24 45 45 H 1.09000 * 117.49357 * 145.02483 * 26 25 24 46 46 H 1.08997 * 117.50356 * 252.51343 * 27 26 25 47 47 H 1.09004 * 117.51420 * 107.48016 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0051 5 6 3.5663 1.2748 0.0006 6 1 3.9555 0.7851 0.8933 7 6 4.0002 2.7419 -0.0066 8 7 3.5864 3.3796 1.2458 9 6 3.7701 4.7032 1.4208 10 8 4.3623 5.3493 0.5825 11 6 3.2396 5.3806 2.6581 12 1 2.3034 4.9093 2.9571 13 7 3.0035 6.8025 2.3749 14 6 4.2611 5.2486 3.7895 15 6 3.6889 5.8646 5.0677 16 6 4.6953 5.7351 6.1819 17 1 5.6476 5.2605 5.9969 18 6 4.3998 6.2217 7.4377 19 7 3.2399 6.7991 7.6631 20 14 5.6470 6.0605 8.8190 21 1 6.8958 6.7710 8.4437 22 1 5.0917 6.6585 10.0597 23 1 5.9452 4.6245 9.0516 24 6 4.1142 0.5748 -1.2448 25 6 5.6424 0.5412 -1.1801 26 6 6.4122 1.2985 -2.2641 27 6 6.3791 -0.2311 -2.2765 28 1 -0.3634 0.5140 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 5.0845 2.7997 -0.1027 32 1 3.5330 3.2549 -0.8471 33 1 3.1802 2.8491 1.9490 34 1 3.8571 7.2621 2.0952 35 1 2.2850 6.9175 1.6758 36 1 4.4798 4.1945 3.9604 37 1 5.1779 5.7699 3.5138 38 1 3.4701 6.9187 4.8967 39 1 2.7721 5.3434 5.3433 40 1 3.0319 7.1410 8.5467 41 1 3.7298 -0.4442 -1.2876 42 1 3.8001 1.1193 -2.1353 43 1 6.0703 0.5234 -0.1778 44 1 5.8299 1.8203 -3.0235 45 1 7.3467 1.7793 -1.9749 46 1 7.2917 -0.7566 -1.9954 47 1 5.7749 -0.7156 -3.0435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584845854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:41 Heat of formation + Delta-G solvation = -144.218002 kcal Electronic energy + Delta-G solvation = -26212.024620 eV Core-core repulsion = 22393.883838 eV Total energy + Delta-G solvation = -3818.140783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.88092 -40.87567 -38.86592 -37.70863 -36.86046 -36.16551 -34.80767 -33.66002 -31.93143 -28.95428 -28.60912 -27.36848 -25.54710 -24.59392 -23.16320 -22.33158 -21.65289 -21.52159 -20.89698 -18.82708 -18.69874 -18.11702 -17.81834 -17.57706 -17.20308 -16.76521 -16.45386 -16.26189 -15.95966 -15.46882 -15.28608 -15.00278 -14.50398 -14.37498 -14.25652 -14.09221 -13.83969 -13.59399 -13.40092 -13.28380 -12.95071 -12.76332 -12.52177 -12.49421 -12.40000 -12.27725 -12.22925 -11.81664 -11.76468 -11.63819 -11.58936 -11.26817 -11.05279 -11.00002 -10.79090 -10.48022 -10.13925 -9.62925 -8.12845 -6.23657 1.07604 1.42244 1.45638 1.51629 1.53777 1.65400 2.14327 2.45636 2.91286 3.19922 3.33051 3.55989 3.60243 3.71752 3.88412 3.99544 4.07395 4.09325 4.11378 4.27494 4.31211 4.32045 4.32507 4.55990 4.57708 4.69106 4.74164 4.78024 4.85444 4.91666 4.93729 4.94783 5.10575 5.25369 5.30814 5.32189 5.35850 5.39273 5.57603 5.84688 5.99356 6.07710 6.30725 6.39973 6.50527 6.65147 6.94999 7.12077 7.44475 8.98357 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012926 B = 0.002848 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.655105 B = 9829.242019 C =10373.749400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.461 3.539 4 O -0.528 6.528 5 C -0.080 4.080 6 H 0.141 0.859 7 C 0.136 3.864 8 N -0.713 5.713 9 C 0.492 3.508 10 O -0.581 6.581 11 C 0.085 3.915 12 H 0.102 0.898 13 N -0.818 5.818 14 C -0.081 4.081 15 C 0.040 3.960 16 C -0.545 4.545 17 H 0.058 0.942 18 C 0.000 4.000 19 N -0.931 5.931 20 Si 0.962 3.038 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.264 1.264 24 C -0.069 4.069 25 C -0.158 4.158 26 C -0.193 4.193 27 C -0.169 4.169 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.408 0.592 34 H 0.346 0.654 35 H 0.344 0.656 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.005 0.995 39 H -0.009 1.009 40 H 0.262 0.738 41 H 0.102 0.898 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.359 -20.307 -21.005 29.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.304 3.696 4 O -0.417 6.417 5 C -0.099 4.099 6 H 0.159 0.841 7 C 0.013 3.987 8 N -0.364 5.364 9 C 0.278 3.722 10 O -0.461 6.461 11 C -0.031 4.031 12 H 0.120 0.880 13 N -0.347 5.347 14 C -0.119 4.119 15 C 0.003 3.997 16 C -0.583 4.583 17 H 0.076 0.924 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.786 3.214 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.107 4.107 25 C -0.176 4.176 26 C -0.230 4.230 27 C -0.206 4.206 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.151 0.849 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.244 0.756 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.023 0.977 39 H 0.010 0.990 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.132 0.868 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.119 0.881 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.521 -19.426 -20.728 28.413 hybrid contribution 0.150 0.056 0.157 0.225 sum -0.371 -19.369 -20.571 28.257 Atomic orbital electron populations 1.23531 0.74982 1.05679 1.02332 1.86489 1.24684 1.32442 1.83559 1.24022 0.92460 0.81385 0.71709 1.90741 1.67762 1.37349 1.45834 1.21428 0.86538 0.97010 1.04903 0.84096 1.21290 1.00586 0.90327 0.86520 1.45950 1.62936 1.08505 1.19040 1.22227 0.78398 0.82694 0.88927 1.90627 1.43169 1.65489 1.46836 1.21615 1.00391 0.89454 0.91606 0.88044 1.58977 1.14227 1.09976 1.51536 1.21387 0.96163 1.00741 0.93614 1.18812 0.94431 0.95616 0.90875 1.21722 1.02559 1.38038 0.95988 0.92411 1.25935 0.97323 0.94893 1.01574 1.70111 1.23781 1.40324 1.22924 0.85560 0.78996 0.78864 0.77957 1.19544 1.20999 1.18920 1.21074 0.93517 1.01649 0.94411 1.22313 0.93030 1.06066 0.96164 1.23128 1.02618 0.95306 1.01979 1.23043 1.02689 0.93785 1.01068 0.92358 0.92137 0.84944 0.89360 0.92537 0.75645 0.84004 0.84255 0.91313 0.93684 0.97652 0.99041 0.92937 0.88009 0.91112 0.86836 0.88911 0.89059 0.88073 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -5.58 10.36 -51.36 -0.53 -6.11 16 3 C 0.46 8.69 7.00 71.24 0.50 9.19 16 4 O -0.53 -13.87 15.11 21.95 0.33 -13.54 16 5 C -0.08 -1.14 2.27 -11.54 -0.03 -1.17 16 6 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 7 C 0.14 2.88 4.53 86.38 0.39 3.27 16 8 N -0.71 -18.21 4.76 -463.07 -2.21 -20.42 16 9 C 0.49 16.21 7.02 87.66 0.62 16.83 16 10 O -0.58 -22.30 16.31 -3.04 -0.05 -22.35 16 11 C 0.09 3.03 3.17 44.17 0.14 3.17 16 12 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 13 N -0.82 -29.77 8.42 -171.81 -1.45 -31.21 16 14 C -0.08 -3.35 4.79 30.59 0.15 -3.21 16 15 C 0.04 2.13 4.85 29.85 0.14 2.27 16 16 C -0.55 -31.35 9.11 25.60 0.23 -31.12 16 17 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 18 C 0.00 0.03 5.46 84.65 0.46 0.49 16 19 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 20 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 24 C -0.07 -0.74 4.93 30.60 0.15 -0.59 16 25 C -0.16 -1.73 4.65 -10.79 -0.05 -1.78 16 26 C -0.19 -2.44 10.18 30.60 0.31 -2.13 16 27 C -0.17 -1.65 10.25 30.60 0.31 -1.34 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 30 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 1.83 7.22 -2.39 -0.02 1.82 16 32 H 0.06 1.43 7.94 -2.39 -0.02 1.41 16 33 H 0.41 9.11 8.34 -92.70 -0.77 8.34 16 34 H 0.35 12.74 8.56 -89.69 -0.77 11.98 16 35 H 0.34 11.05 9.06 -89.69 -0.81 10.24 16 36 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.01 0.30 7.70 -2.39 -0.02 0.28 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.10 0.86 7.98 -2.39 -0.02 0.84 16 42 H 0.07 0.84 7.87 -2.38 -0.02 0.82 16 43 H 0.11 1.20 8.07 -2.39 -0.02 1.18 16 44 H 0.09 1.20 8.03 -2.39 -0.02 1.18 16 45 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 46 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -75.30 394.25 1.57 -73.73 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -1.37 Total: 35.09 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 4.53 Total: -4.58 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -3.37 Total: -108.97 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.25 Total: -42.00 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -75.30 1.57 -73.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584845854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.490 kcal (2) G-P(sol) polarization free energy of solvation -75.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds